nrarpb (nrarpb,nrarpa,nrarp,LOC108255347,LOC107595556)


Basic Information

Item Value
gene id nrarpb
gene name nrarpb,nrarpa,nrarp,LOC108255347,LOC107595556
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 19707288 ~ 19710070 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU55947
CGGAGCGCACGGTCAGAGCACAGCGCGCGGAGCAGGAGGCGATCTACAGCCGCTCGTGGGAACCACCTAGGAACAGAGTACCGGAGCATGGAATACTGAAGTTATTAAGGACCGTATGATATGTTTGACTAATAACATATCGAGCGTCTACCGCGGAACGCATAAAGTGGGGGAAACCGCGAACACCCTGGAGCTCGGTCTTTTGATGTTCACTGGCTCGTTGTCTGTCCTCTAGCAGAAGCGCAAGCGAAGGGCTGCGGTCGTCTACCTGTTGAAATCATGAGTCAGGCGGACATGACTTGCTCTGCGCGTCAAAGAGTGTTTCAGGAAGCGCTCAGGAAGGGCAATACCAAGGAGCTCCATTCTCTCTTGCAAAACATGACAAACTGTGAATTTAACGTGAACTCTTTCGGACCCGAGGGACAGACGGCGCTGCACCAGTCCGTGATCGATGGCAACCTGGAGTTAGTAAAGCTGCTGGTGAAGTTCGGTGCAGACATCCGCCTGGCCAACAGAGACGGATGGAGCGCCCTGCACATAGCAGCGTTTGGTGGACATCAAGACATCGTGCTTTACCTCGTCACGCGGGCGAAGTACTCATCAAGCGCGCTCTGAGGCAATCAAAGGAAATCTGACGCTGTACCTTTAGGCCTATCGCATATTTGACCCCTTTGTGCCAAAGTAAAAGACAGCTTGTTTGTGATGTAATGGGTTTAGGAAATTGATTTGATGTCGATGGGCACAGAATTCAAATCCAAAAGGCTATTTTTGATGTTGTCGGGTTGGTACAATGTCATGGATGGGGTTTGCCAACTTCGGATGCGTGATGAAAATGATTGCTGTGTTATTTATGGAATTATTTGAGAATACGACAAATTGAACGGTCATGTCAAAGTTTAACAAAAAGATGACACGTGGTGGTCCTACAGAATGACTAGTCTCAGGGTGCGAATTATGGGGGGTCTGACTCCTAAATTGAGGCTTTAACACCCCAGAAGAACAAAACTGCGGTGGTCCTGCAACCATTCCTTTTACCTTTATTTCAATCAAAGTTTTAAGAATCGCGAAAAATTCTCAAAATAGGCCTACATTTGAGTAACCATAGCAACGATTTAATAACACATTCACTGCTACGGTATCTAACAGTGAGTGCATTTACACGACATTTAGCCTAGCTAttttttaacagatattcacGTCACagatatttcacatattttgttctaaacacatttacatatatctGACGTTTAGCCAACCCGCATACAAAATCCGAACATTGCTGACAGACATATCTTCGAAATGTCGACCCCCCCCCTCAATAAATAATTTGCACACTGACTGGACTGACATACATATTCCTGTACAGAATTACATTAAGTACACATTCTCTCTGCATATTGTCTAAAACGGGGACCGATGTCTGATACCTCaactgtaatgcattataatggtGACATTGCAATGTTGGTCATCACGTAATTAACCAGTCGAGATCTCTCACctcttaaatgaaaaatatccaCGCGAACACTTTCTGGCACAGACACTGCCAAGTAGGGTTTGTCTGTCGTAATCAGTACTTCGTCATGGAGTTCCTGAGTTTCTGAcactaaagcttttttttaaacctttttttttttcatttaggcGATCCACACATTTCAAGCCACATGGTTTTGTAATTCAGAGGTTGAGCAAATCCACAGATCGGTGCGTAGACTGCACTGGATCCTAAAGCACATTGGCCTTGTCCTCTTAAACCCCTTGCCGACTCAGGCAAGATGGGGTTTAAATACGTCGTGACTTTTGAAATGCTTCAAAGCCAGTATAGAAATATGCATCACTTATACttgagaatgttttaaatattgcacTGATGGCTGTTTTATGAGTTGTTGGTGTCATGCCAACTTTTAAAGATACTATTTTTCTAAATGGAAAACAATTCTTATTGTATGGAAGCTCCAGGGTGGTTTTCACTCATTCTTTGCAAAGGCTTTTATATGCCTGTGAACTGAATTACTGTATGTGTAATTATGTAACACACTCTGCTTGAATGTCCCTCCATAAGTAATGTCGAACATATTCTAGACTTTTAACAAATACGGTAAAAATGTGACAGTGTTACTGGACATCCTTTTGACACAATGGGAGAACATACAAGTAAAGTGTCCAGAAAACTCTTGGAGCACTTCCTTTCTGAAGTCCCATCCTCCTCTTTTTAAGGGGGATGCTACATGGTAAAACCAGTGTGACAAGGAGTTGCACAATGCACAAGTCTTTACTTGATAATGCCATAACATTTATGACATGAAAGTAAAAGTAACTTCTTtgattgagaaaaaaaaaaagtcaaatgactgtgatttttttttatttttattttggaccaacttttgaaatattttcatcaAAGAGAAGTTTGAAAAAAGGCCTCTCgcaatgttttttgtcttttgtgaattgttattttgtgtttttatatctgtt
>XM_043240791.1
TTGTTATTCAAATGAGTCTGAACAGGCGGACTCTAGTCGCTCGGCTTGAACGGAGCGCACGGTCAGAGCACAGCGCGCGGAGCAGGAGGCGATCTACAGCCGCTCGTGGGAACCACCTAGGAACAGAGTACCGGAGCATGGAATACTGAAGTTATTAAGGACCGTATGATATGTTTGACTAATAACATATCGAGCGTCTACCGCGGAACGCATAAAGTGGGGGAAACCGCGAACACCCTGGAGCTCGGTCTTTTGATGTTCACTGGCTCGTTGTCTGTCCTCTAGCAGAAGCGCAAGCGAAGGGCTGCGGTCGTCTACCTGTTGAAATCATGAGTCAGGCGGACATGACTTGCTCTGCGCGTCAAAGAGTGTTTCAGGAAGCGCTCAGGAAGGGCAATACCAAGGAGCTCCATTCTCTCTTGCAAAACATGACAAACTGTGAATTTAACGTGAACTCTTTCGGACCCGAGGGACAGACGGCGCTGCACCAGTCCGTGATCGATGGCAACCTGGAGTTAGTAAAGCTGCTGGTGAAGTTCGGTGCAGACATCCGCCTGGCCAACAGAGACGGATGGAGCGCCCTGCACATAGCAGCGTTTGGTGGACATCAAGACATCGTGCTTTACCTCGTCACGCGGGCGAAGTACTCATCAAGCGCGCTCTGAGGCAATCAAAGGAAATCTGACGCTGTACCTTTAGGCCTATCGCATATTTGACCCCTTTGTGCCAAAGTAAAAGACAGCTTGTTTGTGATGTAATGGGTTTAGGAAATTGATTTGATGTCGATGGGCACAGAATTCAAATCCAAAAGGCTATTTTTGATGTTGTCGGGTTGGTACAATGTCATGGATGGGGTTTGCCAACTTCGGATGCGTGATGAAAATGATTGCTGTGTTATTTATGGAATTATTTGAGAATACGACAAATTGAACGGTCATGTCAAAGTTTAACAAAAAGATGACACGTGGTGGTCCTACAGAATGACTAGTCTCAGGGTGCGAATTATGGGGGGTCTGACTCCTAAATTGAGGCTTTAACACCCCAGAAGAACAAAACTGCGGTGGTCCTGCAACCATTCCTTTTACCTTTATTTCAATCAAAGTTTTAAGAATCGCGAAAAATTCTCAAAATAGGCCTACATTTGAGTAACCATAGCAACGATTTAATAACACATTCACTGCTACGGTATCTAACAGTGAGTGCATTTACACGACATTTAGCCTAGCTAttttttaacagatattcacGTCACagatatttcacatattttgttctaaacacatttacatatatctGACGTTTAGCCAACCCGCATACAAAATCCGAACATTGCTGACAGACATATCTTCGAAATGTCGACCCCCCCCCTCAATAAATAATTTGCACACTGACTGGACTGACATACATATTCCTGTACAGAATTACATTAAGTACACATTCTCTCTGCATATTGTCTAAAACGGGGACCGATGTCTGATACCTCaactgtaatgcattataatggtGACATTGCAATGTTGGTCATCACGTAATTAACCAGTCGAGATCTCTCACctcttaaatgaaaaatatccaCGCGAACACTTTCTGGCACAGACACTGCCAAGTAGGGTTTGTCTGTCGTAATCAGTACTTCGTCATGGAGTTCCTGAGTTTCTGAcactaaagcttttttttaaacctttttttttttcatttaggcGATCCACACATTTCAAGCCACATGGTTTTGTAATTCAGAGGTTGAGCAAATCCACAGATCGGTGCGTAGACTGCACTGGATCCTAAAGCACATTGGCCTTGTCCTCTTAAACCCCTTGCCGACTCAGGCAAGATGGGGTTTAAATACGTCGTGACTTTTGAAATGCTTCAAAGCCAGTATAGAAATATGCATCACTTATACttgagaatgttttaaatattgcacTGATGGCTGTTTTATGAGTTGTTGGTGTCATGCCAACTTTTAAAGATACTATTTTTCTAAATGGAAAACAATTCTTATTGTATGGAAGCTCCAGGGTGGTTTTCACTCATTCTTTGCAAAGGCTTTTATATGCCTGTGAACTGAATTACTGTATGTGTAATTATGTAACACACTCTGCTTGAATGTCCCTCCATAAGTAATGTCGAACATATTCTAGACTTTTAACAAATACGGTAAAAATGTGACAGTGTTACTGGACATCCTTTTGACACAATGGGAGAACATACAAGTAAAGTGTCCAGAAAACTCTTGGAGCACTTCCTTTCTGAAGTCCCATCCTCCTCTTTTTAAGGGGGATGCTACATGGTAAAACCAGTGTGACAAGGAGTTGCACAATGCACAAGTCTTTACTTGATAATGCCATAACATTTATGACATGAAAGTAAAAGTAACTTCTTtgattgagaaaaaaaaaaagtcaaatgactgtgatttttttttatttttattttggaccaacttttgaaatattttcatcaAAGAGAAGTTTGAAAAAAGGCCTCTCgcaatgttttttgtcttttgtgaattgttattttgtgtttttatatctgtttagctgtttgtttatgtttcGAATGATGTAAGTGGTTATATCTTAAATCTATTTCTTGctgtattttgtactttttgtacaAAGGCGTTTTAGATATTAAATTCTGTGGTTTTAAGAAACTTTGGTGTAATGCATAGACTTGTG

Function

symbol description
nrarpa Involved in branching involved in blood vessel morphogenesis and regulation of cell-cell adhesion. Acts upstream of or within blood vessel endothelial cell proliferation involved in sprouting angiogenesis; neural crest cell migration; and pigment cell differentiation. Is expressed in several structures, including germ ring; pronephros; segmental plate; somite border; and trunk vasculature. Orthologous to human NRARP (NOTCH regulated ankyrin repeat protein).
nrarpb Involved in branching involved in blood vessel morphogenesis and regulation of cell-cell adhesion. Acts upstream of or within blood vessel endothelial cell proliferation involved in sprouting angiogenesis. Is expressed in central nervous system; neural plate; neural rod; neural tube; and segmental plate. Orthologous to human NRARP (NOTCH regulated ankyrin repeat protein).
nrarp Involved in Notch signaling pathway. Acts upstream of or within negative regulation of Notch signaling pathway and positive regulation of canonical Wnt signaling pathway.

NR:

description
notch-regulated ankyrin repeat-containing protein B

GO:

id name namespace
GO:0022407 regulation of cell-cell adhesion biological_process
GO:0090263 positive regulation of canonical Wnt signaling pathway biological_process
GO:0045746 negative regulation of Notch signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001755 neural crest cell migration biological_process
GO:0002043 blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0050931 pigment cell differentiation biological_process
GO:0001569 branching involved in blood vessel morphogenesis biological_process
GO:0001938 positive regulation of endothelial cell proliferation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55947 False 2493 TUCP 0.42 2 19707338 19709926
XM_043240791.1 True 2687 mRNA 0.41 2 19707288 19710070

Neighbor

gene id symbol gene type direction distance location
mboat4 LOC107720232,LOC107672543,LOC107567140,LOC107756285 coding upstream 42616 19659663 ~ 19664672 (+)
coq2 coq2,LOC107587489,LOC107699757,LOC107756326,LOC107567138,LOC107672553 coding upstream 58022 19645537 ~ 19649266 (+)
prlrb LOC107720254,LOC107756284,LOC107672558,LOC107567136,LOC107587530 coding upstream 77468 19619341 ~ 19629820 (+)
cplx4b cplx4b,LOC107587492,LOC107567130,LOC107672561,LOC108423624,LOC107720257,LOC107699754 coding upstream 99231 19605980 ~ 19608057 (+)
mrps30 mrps30,LOC107699686 coding upstream 107593 19597550 ~ 19599695 (+)
LOC122344990 ttc16,LOC107699760,LOC107720230 coding downstream 16750 19726820 ~ 19733472 (+)
adamtsl2 adamtsl2,LOC107699701 coding downstream 34475 19744545 ~ 19759281 (+)
notch1b LOC107720248,LOC107567148,LOC107699763,LOC107672539,LOC107745520 coding downstream 84726 19794796 ~ 19832854 (+)
camsap1b LOC107720249,LOC107552625,LOC107672541 coding downstream 127685 19837755 ~ 19860160 (+)
LOC122346028 LOC107672526 coding downstream 150881 19860951 ~ 19864951 (+)
G37843 NA non-coding upstream 60213 19594070 ~ 19647075 (+)
G37734 NA non-coding upstream 418960 19288016 ~ 19288328 (+)
G37620 NA non-coding upstream 780286 18925437 ~ 18927002 (+)
G37619 NA non-coding upstream 781855 18925210 ~ 18925433 (+)
G37618 NA non-coding upstream 782612 18923302 ~ 18924676 (+)
G37951 NA non-coding downstream 49641 19759711 ~ 19760204 (+)
G37956 NA non-coding downstream 84373 19794443 ~ 19867398 (+)
G37958 LOC107745529,LOC107672542,LOC107720246,LOC107552607 non-coding downstream 163172 19873242 ~ 19874144 (+)
G38082 NA non-coding downstream 417331 20127401 ~ 20392624 (+)
G38091 LOC107699781,LOC107552636,LOC107587661,LOC107672574 non-coding downstream 460904 20170974 ~ 20552306 (+)
msh3 msh3,LOC107720281 other upstream 693188 18962322 ~ 19014100 (+)
G37626 LOC107720210 other upstream 766393 18938813 ~ 18940895 (+)
arsk arsk,LOC107703223,LOC107720292,LOC107756297 other upstream 859614 18842819 ~ 18847674 (+)
LOC122345691 NA other upstream 2179844 17526024 ~ 17527444 (+)
LOC122344991 camsap1b,LOC107587696,LOC107672541,LOC107552625,LOC107720249,LOC107745551 other upstream 2334429 17364849 ~ 17372859 (+)
col27a1b col27a1b,col27a1,LOC107699687,LOC107720196,LOC107552608,LOC107731038,LOC107720245,LOC107672548,LOC107587699 other downstream 257507 19967577 ~ 20035380 (+)
lix1 lix1,LOC107552634,LOC107699708,LOC107587723,LOC107672536 other downstream 433213 20143283 ~ 20151686 (+)
G38092 LOC107699781,LOC107552636,LOC107587661,LOC107672574 other downstream 474965 20185035 ~ 20513916 (+)
LOC122345823 LOC107740804,LOC107665032,LOC108255802,LOC107672563,LOC107731037 other downstream 574547 20284617 ~ 20297222 (+)
LOC122345834 lix1,LOC107587723,LOC107672536,LOC107699708,LOC107552634 other downstream 697698 20407768 ~ 20416507 (+)

Expression


Co-expression Network