G37958 (LOC107745529,LOC107672542,LOC107720246,LOC107552607)


Basic Information

Item Value
gene id G37958
gene name LOC107745529,LOC107672542,LOC107720246,LOC107552607
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 19873242 ~ 19874144 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU55996
GTCAAACTCACCGTATCCCACCGTGGGCAGCCCTAAGTGCTTCATGCGGTTCTTCACCAGCTCTGACAGCTCCTGTCTCTCCGAGCGCCGGTACAGGTTCAGGCGCTGCTGATTGATGCGTTCAGCTCGACTGGGCGGTTTGGTGTTTTTTCTGCTCAGCCGTCTCGCCCACTGCATGCTCTTCTTTCGCAGGAGTGggtgctctgattggtcgctCCCTGTGGAGTTTCTGTGGGCGGTTTTCTCTTTCCAGGATTCCCTGCGGTCCCGCGGGTCCTCACAGTCCTCCACAGACACCTGAGACTGTTCGGCATGTTTTCATTGTCAGTCGGTTGAAGTCATTATGTGTTACCTTTATTGTACCAGTCTATTAGCAGCTGAACAACTTTACTTTGGAGAGTAGGACTAAGTaattacacatatatttttagcagGCTCTAACTCATCTCCTGACAGGATGCCATTAGCCTTGTCTACATTTAAGGTCATTCTAAAGTTTGGggtaaatatgatttttttttttaaagatattaatacttttattcagcaaggattcaTTAAATTGATCTTAGGTGTCAGTAAAGACGTTTATGTTAAAACCGATTCCTATTTCAAATAAGTCCAACTCTTTTTAAAATCCTGAATagttataacaaaaatatatgaatacatacattttaaataataattaaaaaaattataatgggcactaaattagcatattagaatggtttttAAGGATGTTAGAATGCtttttaaggatcatgtgaaactgaaggctggagtaatgaaaaaaaaaaattaaaatagaattgtaATAATACCTCACAATATTAGTAATGCAGCctctgtaaaa

Function

NR:

description
PREDICTED: potassium channel subfamily T member 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55996 True 856 lncRNA 0.39 2 19873242 19874144

Neighbor

gene id symbol gene type direction distance location
LOC122346028 LOC107672526 coding upstream 8291 19860951 ~ 19864951 (+)
camsap1b LOC107720249,LOC107552625,LOC107672541 coding upstream 13082 19837755 ~ 19860160 (+)
notch1b LOC107720248,LOC107567148,LOC107699763,LOC107672539,LOC107745520 coding upstream 40388 19794796 ~ 19832854 (+)
adamtsl2 adamtsl2,LOC107699701 coding upstream 113961 19744545 ~ 19759281 (+)
LOC122344990 ttc16,LOC107699760,LOC107720230 coding upstream 139770 19726820 ~ 19733472 (+)
LOC122345916 NA coding downstream 80311 19954455 ~ 19960667 (+)
sh2d3cb sh2d3c,LOC107731039 coding downstream 164827 20038971 ~ 20047598 (+)
tor2a tor2a,LOC107699771,LOC107731016,LOC107552620,LOC107587655,LOC107672551 coding downstream 173981 20048125 ~ 20051547 (+)
inpp5e LOC107720240,LOC107552629,LOC107699774,LOC107672555,LOC107731045,LOC107587653 coding downstream 189556 20063700 ~ 20071214 (+)
LOC122345861 LOC107552612,LOC107576533,LOC107731014 coding downstream 205568 20079712 ~ 20095266 (+)
G37956 NA non-coding upstream 5844 19794443 ~ 19867398 (+)
G37951 NA non-coding upstream 113038 19759711 ~ 19760204 (+)
G37843 NA non-coding upstream 226167 19594070 ~ 19647075 (+)
G37734 NA non-coding upstream 584914 19288016 ~ 19288328 (+)
G37620 NA non-coding upstream 946240 18925437 ~ 18927002 (+)
G38082 NA non-coding downstream 253257 20127401 ~ 20392624 (+)
G38091 LOC107699781,LOC107552636,LOC107587661,LOC107672574 non-coding downstream 296830 20170974 ~ 20552306 (+)
G38107 LOC107740807,LOC107552623,LOC107665026,LOC107731020,LOC107672533 non-coding downstream 429554 20303698 ~ 20684387 (+)
LOC122345857 NA non-coding downstream 445698 20319842 ~ 20320418 (+)
G38112 LOC107552640,LOC107740808,LOC107731062,LOC107665013,LOC107672520,LOC559520,LOC107587663 non-coding downstream 448516 20322660 ~ 20324555 (+)
nrarpb nrarpb,nrarpa,nrarp,LOC108255347,LOC107595556 other upstream 163172 19707288 ~ 19710070 (+)
msh3 msh3,LOC107720281 other upstream 859142 18962322 ~ 19014100 (+)
G37626 LOC107720210 other upstream 932347 18938813 ~ 18940895 (+)
arsk arsk,LOC107703223,LOC107720292,LOC107756297 other upstream 1025568 18842819 ~ 18847674 (+)
LOC122345691 NA other upstream 2345798 17526024 ~ 17527444 (+)
col27a1b col27a1b,col27a1,LOC107699687,LOC107720196,LOC107552608,LOC107731038,LOC107720245,LOC107672548,LOC107587699 other downstream 93433 19967577 ~ 20035380 (+)
lix1 lix1,LOC107552634,LOC107699708,LOC107587723,LOC107672536 other downstream 269139 20143283 ~ 20151686 (+)
G38092 LOC107699781,LOC107552636,LOC107587661,LOC107672574 other downstream 310891 20185035 ~ 20513916 (+)
LOC122345823 LOC107740804,LOC107665032,LOC108255802,LOC107672563,LOC107731037 other downstream 410473 20284617 ~ 20297222 (+)
LOC122345834 lix1,LOC107587723,LOC107672536,LOC107699708,LOC107552634 other downstream 533624 20407768 ~ 20416507 (+)

Expression


Co-expression Network