lix1 (lix1,LOC107552634,LOC107699708,LOC107587723,LOC107672536)


Basic Information

Item Value
gene id lix1
gene name lix1,LOC107552634,LOC107699708,LOC107587723,LOC107672536
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 20143283 ~ 20151686 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU56198
GTCGACTCAGTCGAGTGGGAGTGTGTAACAGcctgtgagagtgtgtatgtagtgagagtgtgtgtgaatataagGGAGTGCAGCGCAACAACCAACCTCACAGCTAATTAGTTCAACCCTTGACAAAAGGTGGGCCAGCCACTGAAGAGAACCCCCGGGGCTCCACAGACTGCTCTGGAGGCTGGAGAGGGGAAGGCTAATAGGGAACCTCCTTATGTTCATCTTTTCTGGAGCTTAACTGATGTTTTGAACTTCTTCAGAGCATGTGAGAGCTGGAGACAGAGGATTGCTGCCGGACGTGTGGGACTAGCAGTTGGAGATCATGTCTGGACCAGATTCTGATGATGACAGGACCTTCAAAGACTTGAATGTCGTGGGAATGCTTCACCAGTTTTGGGAGCAGAAGCAAGTGAAAGGCATGATGATGGAGACAGACAATCTGGTAGTCTACGAGTCCATTCCTCACCCGGCCCGCCCTACACATGCTACGTCACTTTACCAGGTGGCAGCTGCTTTGGAAATTTTAAGtaCTGCTACAGCAAAGCAGAGGCCAGACGTGACGCCGCTCACATCGCTCTGATGAACTCCACATTTAATGAGTTGCCCTGCCGCCGGATCACTCCTGAGTTCATATCACGCAGCGTGAGAGAAGCCGTCAGCACCACCAGCGGTAACACTGCAGATGCGTCTGACCCCGGTACCAGTATAGGAGCATACTGTCTCATGCTGGAGCTGAACACTGGGAAAACCATGCTGGAATTTCAGgaaATAATGACGGTTTTTCAACTTTTGCACTGGAATGGTACTCTGAAGGCTTTCCGTGAGATGAGATGTAGCCGCCAGGATGTGATCCAGTACTACTCCCAGCAGCGTCTGGATGAGCGCATGCGCAGTCACATGGCACTGGACTGGTTACAGAAGGAGCAGCAATCCCCCGGCCTGCTCTCCCAGGAGCTGCAGCTGGCCATGAAGGAGCTGGGAGAGGCCCGGAGAACAGGCAGGGAACTCCGCTTCTAcaaggagaaaaaagaaatcctGAGCTTAGCTCTCAGTCACGCCAATGCCGAGGATCTGGAGAGCTACCACAGCGAGGACATGTCCTGGAGAGAAGAGACTGAGTTTGAGTACTGCACTCAGGAGGGACGCTGTC
>TU56199
CAGCGCACATTATCATATTTCAACAtttggtgatgatgatgaattgaaagcctctctctctctgacagtaCTGCTACAGCAAAGCAGAGGCCAGACGTGACGCCGCTCACATCGCTCTGATGAACTCCACATTTAATGAGTTGCCCTGCCGCCGGATCACTCCTGAGTTCATATCACGCAGCGTGAGAGAAGCCGTCAGCACCACCAGCGGTAACACTGCAGATGCGTCTGACCCCGGTACCAGTATAGGAGCATACTGTCTCATGCTGGAGCTGAACACTGGGAAAACCATGCTGGAATTTCAGgaaATAATGACGGTTTTTCAACTTTTGCACTGGAATGGTACTCTGAAGGCTTTCCGTGAGATGAGATGTAGCCGCCAGGATGTGATCCAGTACTACTCCCAGCAGCGTCTGGATGAGCGCATGCGCAGTCACATGGCACTGGACTGGTTACAGAAGGAGCAGCAATCCCCCGGCCTGCTCTCCCAGGAGCTGCAGCTGGCCATGAAGGAGCTGGGAGAGGCCCGGAGAACAGGCAGGGAACTCCGCTTCTAcaaggagaaaaaagaaatcctGAGCTTAGCTCTCAGTCACGCCAATGCCGAGGATCTGGAGAGCTACCACAGCGAGGACATGTCCTGGAGAGAAGAGACTGAGTTTGAGTACTGCACTCAGGAGGGACGCTGTC
>XM_043238650.1
CGAGTGGGAGTGTGTAACAGcctgtgagagtgtgtatgtagtgagagtgtgtgtgaatataagGGAGTGCAGCGCAACAACCAACCTCACAGCTAATTAGTTCAACCCTTGACAAAAGGTGGGCCAGCCACTGAAGAGAACCCCCGGGGCTCCACAGACTGCTCTGGAGGCTGGAGAGGGGAAGGCTAATAGGGAACCTCCTTATGTTCATCTTTTCTGGAGCTTAACTGATGTTTTGAACTTCTTCAGAGCATGTGAGAGCTGGAGACAGAGGATTGCTGCCGGACGTGTGGGACTAGCAGTTGGAGATCATGTCTGGACCAGATTCTGATGATGACAGGACCTTCAAAGACTTGAATGTCGTGGGAATGCTTCACCAGTTTTGGGAGCAGAAGCAAGTGAAAGGCATGATGATGGAGACAGACAATCTGGTAGTCTACGAGTCCATTCCACCCGGCCCGCCCTACACATGCTACGTCACTTTACCAGGTGGCAGCTGCTTTGGAAATTTTAAGtaCTGCTACAGCAAAGCAGAGGCCAGACGTGACGCCGCTCACATCGCTCTGATGAACTCCACATTTAATGAGTTGCCCTGCCGCCGGATCACTCCTGAGTTCATATCACGCAGCGTGAGAGAAGCCGTCAGCACCACCAGCGGTAACACTGCAGATGCGTCTGACCCCGGTACCAGTATAGGAGCATACTGTCTCATGCTGGAGCTGAACACTGGGAAAACCATGCTGGAATTTCAGgaaATAATGACGGTTTTTCAACTTTTGCACTGGAATGGTACTCTGAAGGCTTTCCGTGAGATGAGATGTAGCCGCCAGGATGTGATCCAGTACTACTCCCAGCAGCGTCTGGATGAGCGCATGCGCAGTCACATGGCACTGGACTGGTTACAGAAGGAGCAGCAATCCCCCGGCCTGCTCTCCCAGGAGCTGCAGCTGGCCATGAAGGAGCTGGGAGAGGCCCGGAGAACAGGCAGGGAACTCCGCTTCTAcaaggagaaaaaagaaatcctGAGCTTAGCTCTCAGTCACGCCAATGCCGAGGATCTGGAGAGCTACCACAGCGAGGACATGTCCTGGAGAGAAGAGACTGAGTTTGAGTACTGCACTCAGGAGGGACGCTGTCGAGGAAGTATGACGGATCCTTCAGAGCACTGCCCGTTTCACTCTCAGGAGAGCGACAGAGAATCGGTGGAGTGAGCTCTGGGAGACAAGAcgtttatac

Function

symbol description
lix1 Predicted to be involved in autophagosome maturation. Predicted to be active in cytoplasm. Orthologous to human LIX1 (limb and CNS expressed 1).

NR:

description
PREDICTED: protein limb expression 1 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU56198 False 1150 TUCP 0.52 6 20143283 20151585
TU56199 False 690 TUCP 0.53 4 20148421 20151585
XM_043238650.1 True 1236 mRNA 0.52 8 20143294 20151686

Neighbor

gene id symbol gene type direction distance location
zbtb26 si:ch211-236k19.4,LOC107552622,LOC107740829,LOC107699705,LOC107672535,LOC107731026,LOC107587659 coding upstream 15896 20125104 ~ 20127387 (+)
krt1-c5 krt1-c5,LOC107740828,LOC107699777,LOC107552621,LOC107672537,LOC107731028 coding upstream 18951 20117169 ~ 20124332 (+)
lhx6b si:ch211-236k19.2,LOC107731013,LOC107672524,LOC107580313 coding upstream 27445 20112320 ~ 20115838 (+)
LOC122345861 LOC107552612,LOC107576533,LOC107731014 coding upstream 48017 20079712 ~ 20095266 (+)
inpp5e LOC107720240,LOC107552629,LOC107699774,LOC107672555,LOC107731045,LOC107587653 coding upstream 72069 20063700 ~ 20071214 (+)
LOC122345846 LOC107587725,LOC107660331,LOC107672538,LOC103911143 coding downstream 60181 20211867 ~ 20218048 (+)
rxrab rxrab,LOC107660328,LOC107672569,LOC107740802,LOC107731035,LOC107552637,LOC108255946,LOC108423686,LOC103046247 coding downstream 80498 20232184 ~ 20279189 (+)
LOC122345838 fam78aa,LOC107731022,LOC107672534,LOC107740833,LOC107552624,LOC107665027 coding downstream 156836 20308522 ~ 20311450 (+)
LOC122344786 gpsm1a,LOC107740834,LOC107595532,LOC107587727,LOC107672581 coding downstream 217359 20369045 ~ 20370240 (+)
LOC122345840 cmlc1,LOC107095684,LOC103473836,LOC105934481,LOC102226792,LOC103150158,LOC103390188 coding downstream 227203 20378889 ~ 20379665 (+)
G37958 LOC107745529,LOC107672542,LOC107720246,LOC107552607 non-coding upstream 269139 19873242 ~ 19874144 (+)
G37956 NA non-coding upstream 275885 19794443 ~ 19867398 (+)
G37951 NA non-coding upstream 383079 19759711 ~ 19760204 (+)
G37843 NA non-coding upstream 496208 19594070 ~ 19647075 (+)
G37734 NA non-coding upstream 854955 19288016 ~ 19288328 (+)
G38091 LOC107699781,LOC107552636,LOC107587661,LOC107672574 non-coding downstream 19288 20170974 ~ 20552306 (+)
G38107 LOC107740807,LOC107552623,LOC107665026,LOC107731020,LOC107672533 non-coding downstream 152012 20303698 ~ 20684387 (+)
LOC122345857 NA non-coding downstream 168156 20319842 ~ 20320418 (+)
G38112 LOC107552640,LOC107740808,LOC107731062,LOC107665013,LOC107672520,LOC559520,LOC107587663 non-coding downstream 170974 20322660 ~ 20324555 (+)
G38113 qsox2,LOC107740821,LOC107665046,LOC107552641,LOC107672576,LOC107731056,LOC107587664 non-coding downstream 174643 20326329 ~ 20707466 (+)
col27a1b col27a1b,col27a1,LOC107699687,LOC107720196,LOC107552608,LOC107731038,LOC107720245,LOC107672548,LOC107587699 other upstream 107903 19967577 ~ 20035380 (+)
nrarpb nrarpb,nrarpa,nrarp,LOC108255347,LOC107595556 other upstream 433213 19707288 ~ 19710070 (+)
msh3 msh3,LOC107720281 other upstream 1129183 18962322 ~ 19014100 (+)
G37626 LOC107720210 other upstream 1202388 18938813 ~ 18940895 (+)
arsk arsk,LOC107703223,LOC107720292,LOC107756297 other upstream 1295609 18842819 ~ 18847674 (+)
G38092 LOC107699781,LOC107552636,LOC107587661,LOC107672574 other downstream 33349 20185035 ~ 20513916 (+)
LOC122345823 LOC107740804,LOC107665032,LOC108255802,LOC107672563,LOC107731037 other downstream 132931 20284617 ~ 20297222 (+)
LOC122345834 lix1,LOC107587723,LOC107672536,LOC107699708,LOC107552634 other downstream 256082 20407768 ~ 20416507 (+)
G38094 olfm1a,LOC107672574,LOC107587661,LOC107552636 other downstream 407141 20558827 ~ 20562352 (+)
pappab pappab,LOC107665047,LOC107587665,LOC107667798,LOC107595518,LOC107731007,LOC107740823 other downstream 663735 20815421 ~ 20888271 (+)

Expression


Co-expression Network