G38092 (LOC107699781,LOC107552636,LOC107587661,LOC107672574)


Basic Information

Item Value
gene id G38092
gene name LOC107699781,LOC107552636,LOC107587661,LOC107672574
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 20185035 ~ 20513916 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU56215
GGAAAAATGAATACacactttatttactttaaatatttacatactaatCATGAACATACCCTTAACACTAGTGAACCTTAACTCTTTATAGTGCCGTATGTTTTAAGTAAGTACATGTaagtatgtaaatatttaaagtaaataaagtgtGTATTCATTTTTCCCCCTCCAGGTGTGGTACATGGACGGTTACCACAACAACCGCTTTGTCCGGGAATACAAGTCAATGGCCGACTTCATGTATTCAGACAACTTCACCTCACACCGGCTTCCTCACCCCTGGTCGGGAACAGGGCAGGTGGTCTACAATGGCTCCATCTACTTCAATAAGTTCCAAAGTAACACCATCATCAAATTCGACTTCAAGACAGCCACCATCAGCAAGTCCGGTCAGCTGGATTACGCCGGCTACAACAACCGTTACCACTATTCTTGGGGTGGCCACTCCGACATTGACCTAATGGTGGACGAAGGTGGACTTTGGGCGGTATATGCCACCAATCAAAATGCAGGGAACATTGTCATCAGCAAGATCAACCCACTGACCCTGCAGGTCATCAAGAGCTACACCACCAACCACCCAAAGAGGAGCGCAGGTGAAGCCTTCATGATCTGTGGGACGCTTTATGTTACCAACGGATACTCAGGAGGGACGAAGGTCTACTATGCTTTCCATACCAACTCCTCTACTTATGAGTATATCGACATCCCATTACAGAACAAGTATTCCCATATCTCCATGCTGGATTATAACCCTAGGGACAGAGCTCTA
>TU56217
CTCGCGCTATCCGGTGCTGAACTTTATAATTACTCGCGCGAAGAGAGCAGACGGAGCAGCAGCGCGCGTCTCGGAAACCGACAGAGCTCGAGTAATTATAAAGTTCAGCACCGGATAGCGCGAGTAGACACGCCCGAGATGAATTCGCTTGCGCCGGGTGCTTTACAGGAGCACGCCGCCTCTGACAGCAGCGCGGGTTACGGTTTTCTCCTGGAATGTGTATAATGAAGGTTACCGGGAAAGAGGAGAGCAGAGATGTCGGTGCCTTTGCTGAAAATTGGAGTAGTGCTCAGCACGATGGCGATGATCACCAACTGGATGTCGCAAACCCTGCCCTCTCTAGTAGGTCTGAATAGCACCAAACTGAGCGTGGCGCCTCCGGGTGTGCCGGACCGGAGCACTGGCGTGCTTCCTGCTAACCCAGAGGAGTCGTGGCAGGTGTACAGCTCAGCTCAAGACAGTGAGGGCAGGTGTGTGTGCACCGTTGTGGCTCCTCAGCAGACCATGTGTTCACGGGATGCCAGGACCAAACAACTGAGACAGCTCCTGGAAAAAgtccaGAACATGACCCAGTCCATCCAGAATCTTGACCAGAGGACTCAGAAAGACCTGCAGTACGTGCAAAGGATGGAGGTGCAGCTGAGAGGCTTcgtgcatgcatgcaaaaattaGGTGTGGTACATGGACGGTTACCACAACAACCGCTTTGTCCGGGAATACAAGTCAATGGCCGACTTCATGTATTCAGACAACTTCACCTCACACCGGCTTCCTCACCCCTGGTCGGGAACAGGGCAGGTGGTCTACAATGGCTCCATCTACTTCAATAAGTTCCAAAGTAACACCATCATCAAATTCGACTTCAAGACAGCCACCATCAGCAAGTCCGGTCAGCTGGATTACGCCGGCTACAACAACCGTTACCACTATTCTTGGGGTGGCCACTCCGACATTGACCTAATGGTGGACGAAGGTGGACTTTGGGCGGTATATGCCACCAATCAAAATGCAGGGAACATTGTCATCAGCAAGATCAACCCACTGACCCTGCAGGTCATCAAGAGCTACACCACCAACCACCCAAAGAGGAGCGCAGGTGAAGCCTTCATGATCTGTGGGACGCTTTATGTTACCAACGGATACTCAGGAGGGACGAAGGTCTACTATGCTTTCCATACCAACTCCTCTACTTATGAGTATATCGACATCCCATTACAGAACAAGTATTCCCATATCTCCATGCTGGATTATAACCCTAGGGACAGAGCTCTA

Function

NR:

description
PREDICTED: noelin isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU56215 False 772 TUCP 0.44 2 20432347 20513916
TU56217 True 1272 TUCP 0.52 6 20185035 20513916

Neighbor

gene id symbol gene type direction distance location
zbtb26 si:ch211-236k19.4,LOC107552622,LOC107740829,LOC107699705,LOC107672535,LOC107731026,LOC107587659 coding upstream 57648 20125104 ~ 20127387 (+)
krt1-c5 krt1-c5,LOC107740828,LOC107699777,LOC107552621,LOC107672537,LOC107731028 coding upstream 60703 20117169 ~ 20124332 (+)
lhx6b si:ch211-236k19.2,LOC107731013,LOC107672524,LOC107580313 coding upstream 69197 20112320 ~ 20115838 (+)
LOC122345861 LOC107552612,LOC107576533,LOC107731014 coding upstream 89769 20079712 ~ 20095266 (+)
inpp5e LOC107720240,LOC107552629,LOC107699774,LOC107672555,LOC107731045,LOC107587653 coding upstream 113821 20063700 ~ 20071214 (+)
LOC122345824 LOC107740804,LOC107665032 coding downstream 151017 20664933 ~ 20677943 (+)
LOC122345098 gpsm1a,LOC107587727,LOC107595532,LOC107672581 coding downstream 219706 20733622 ~ 20739157 (+)
LOC122345842 gpsm1a,LOC107587727,LOC107595532,LOC107672581 coding downstream 260483 20774399 ~ 20783388 (+)
ak5l ak5l,LOC107731024,LOC107665022,LOC107740835,LOC107595531,LOC108255392,LOC108423692,LOC107672580 coding downstream 270945 20784861 ~ 20790622 (+)
LOC122344887 cmlc1,LOC107095684,LOC103473836,LOC105934481,LOC102226792,LOC103150158,LOC103390188 coding downstream 278288 20792204 ~ 20792978 (+)
G37958 LOC107745529,LOC107672542,LOC107720246,LOC107552607 non-coding upstream 310891 19873242 ~ 19874144 (+)
G37956 NA non-coding upstream 317637 19794443 ~ 19867398 (+)
G37951 NA non-coding upstream 424831 19759711 ~ 19760204 (+)
G37843 NA non-coding upstream 537960 19594070 ~ 19647075 (+)
G37734 NA non-coding upstream 896707 19288016 ~ 19288328 (+)
G38093 NA non-coding downstream 18308 20532224 ~ 20560009 (+)
LOC122345855 NA non-coding downstream 63468 20577384 ~ 20577995 (+)
LOC122345853 NA non-coding downstream 97410 20611326 ~ 20637269 (+)
G38132 NA non-coding downstream 184431 20698347 ~ 20699025 (+)
G38118 ak5l,LOC107731024,LOC107740835,LOC107672580,LOC107665022,LOC107595531,LOC108423692 non-coding downstream 230642 20744558 ~ 20746880 (+)
lix1 lix1,LOC107552634,LOC107699708,LOC107587723,LOC107672536 other upstream 33349 20143283 ~ 20151686 (+)
col27a1b col27a1b,col27a1,LOC107699687,LOC107720196,LOC107552608,LOC107731038,LOC107720245,LOC107672548,LOC107587699 other upstream 149655 19967577 ~ 20035380 (+)
nrarpb nrarpb,nrarpa,nrarp,LOC108255347,LOC107595556 other upstream 474965 19707288 ~ 19710070 (+)
msh3 msh3,LOC107720281 other upstream 1170935 18962322 ~ 19014100 (+)
G37626 LOC107720210 other upstream 1244140 18938813 ~ 18940895 (+)
G38094 olfm1a,LOC107672574,LOC107587661,LOC107552636 other downstream 44911 20558827 ~ 20562352 (+)
pappab pappab,LOC107665047,LOC107587665,LOC107667798,LOC107595518,LOC107731007,LOC107740823 other downstream 301505 20815421 ~ 20888271 (+)
cntrl cntrl,LOC107740813,LOC107665016,LOC107688625,LOC107731033,LOC107587713 other downstream 533024 21046940 ~ 21069517 (+)
tecta tecta,LOC107665015,LOC107688634,LOC106603728 other downstream 571032 21084948 ~ 21120840 (+)
LOC122345215 specc1,LOC107712164,LOC107665038,LOC107731042,LOC107688619,LOC107587672 other downstream 666528 21180444 ~ 21260715 (+)

Expression


Co-expression Network