G38113 (qsox2,LOC107740821,LOC107665046,LOC107552641,LOC107672576,LOC107731056,LOC107587664)


Basic Information

Item Value
gene id G38113
gene name qsox2,LOC107740821,LOC107665046,LOC107552641,LOC107672576,LOC107731056,LOC107587664
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 20326329 ~ 20707466 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU56266
gTGCTATGTAAAACTCAAATAAGTGTATGTATCTGCATTGTTGGTAGATGTGAACTAGGAAATGATgggaaatacatatttttatttgaaagataACTTACAGTGTTCTTCATACAAAATGCAACAACTCCCCTGAAAGGACaaactacatatatatacagaacaACCGCACCCAAAAATAGTctttagataaaaatataattcttaaAGCACtggaaataataattcaatgcaatgcaatttacAGCCGTTCATTTGGAGCAGCTTGGAAGGCCACCATTATGGGCACATACTGTCACAACACAGAAGCTGTATTTTATTAAGaatgctttataaatatttagccTCAGGTCCACATTAACACTGCTCCATTAGATAGTGAAATAAATATCACAAGCTGAACACATTACAAATCAGTCTACAAACCAAATGCTGATAATGCATTTTACGATATCAACACATTTTAATTCGAAATTTTGAATCAAAATACTGCTGTAGTAATATATAGATGTTAAACATTAAACGGCTTGTGATCAGGAATCCTCTGAGTACACTGTAATAATGCTTTCCCTTAAGGTTCAACATATAGTGTGTCTTCTATGAGCTCTACAAcagaacacatttgtttttacagtgacttggacaaaaaaaaaaagttaaaagtataaaatatttattagaataaGTTCCAGTTTAAAAGAGACTCTGTAatctactgaagaaaaaaaaaaaaaaaaagagattatcAATAAAGTTTTACTCAGCAAGTGTGCTCAGTACAACTCAGTACCAAAAAAATtcagacacatttttattttcggGAAGATATTATTGTACCCCTTACTGCTGAATTGCATCAATTCAACTAATTATGAAGCATTCTGACAAGATTTAGAAGGtaatagaataaaaagaaagaaattaagcttaaaatgaaatgtagcTCTTTTTGTGACTTAACATGCAGACAAAACCAATGGTTTTTCCACATCTGGTCACTGACAGGCAGTGTTTCGTGTCACTGGCTTCTCGGCGAGCGACCTTGAGCGACAGAATAAATCATATTCCCAAGTGTTTTTTGGACCATCAAACAGAAATATGGGGACAGAGTGACTTTCATAGAGAGCGATATATACCCTGTGAGAAACTTAggatatattattacaataaaaatctctataaataatgtagaatattcataaaaatatactttgacCTAGGTTGTtacttttactataataaaatagcTTCTCCTGTTAAATAATCCTCTCTGTTTGTTTAGGGTTGAGAAATCCTAGCTAACAGGTGCTTGTTTACACAGCTAGGCCTGATACACAAGGTAAATTTTCACAagttcttcatttaaaaaaaaaaaaaaaaaaacacttcacaaaaacatcaacaacaacaagatcaaaacaaataaaagtaattaaataaattaatagtgtCCTTCAACACTTGGCAggggtttttatatattacattcacCTTTTCCACAGTTTTCCATCGCAGTGTTCCTAGGCTATACGTAAGGCCGGTAGTTTCTGGTTTTCCATCTCTTCGAGCGAAAGcggaagaagaaaaacatgaacatgaGGAAGACACAGGAGAGGGCGTAGAGCAGCACGCAGAGACTCATGTCCACGCTGGAGAATCCCAGGCCCAGGAACGTCATGCCTGGCCTGGCTTCTATCTGGATGCCGGTGTGCTTCTCTCCTGCGCCAATGCTGTCACTCCTCTTCTGATGTTTCGGAGCGCTGTCAGGAGACGGCTTTAGGTTCTGGTTGAGGTGAAGGTTGCCGTTTGGTTTGGTTATGGCTTTGGGTTTGTCGGGAGCAGGAGGAACTGGCTCTGGATGGCTGTTGCTGGAGTATTTTGGGGAGATGTTTGAGACACCGTAGTGTTGTCTGAGGAAAGCGAGCACCATCTGTTCGTTCCAGACATGAAGGCCTTCTTGCTCCTCGTGGCATGTGGGACAGAGATCAGGAGTCGGCCACTGAGTCTTAGGAAACATGGGGTCCTCGCTCATTGAACCTGCAGAACAAGAGCAATCAGCTGTGAGGGTAACGTCTGCTAGCATGTTTAGGACAACTTTACATTTATAGTTTGGACATGAAAACATAACT

Function

symbol description
qsox2 Predicted to enable flavin-linked sulfhydryl oxidase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human QSOX2 (quiescin sulfhydryl oxidase 2).

NR:

description
PREDICTED: sulfhydryl oxidase 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU56266 True 2129 lncRNA 0.37 2 20326329 20707466

Neighbor

gene id symbol gene type direction distance location
LOC122345838 fam78aa,LOC107731022,LOC107672534,LOC107740833,LOC107552624,LOC107665027 coding upstream 14879 20308522 ~ 20311450 (+)
rxrab rxrab,LOC107660328,LOC107672569,LOC107740802,LOC107731035,LOC107552637,LOC108255946,LOC108423686,LOC103046247 coding upstream 47140 20232184 ~ 20279189 (+)
LOC122345846 LOC107587725,LOC107660331,LOC107672538,LOC103911143 coding upstream 108281 20211867 ~ 20218048 (+)
zbtb26 si:ch211-236k19.4,LOC107552622,LOC107740829,LOC107699705,LOC107672535,LOC107731026,LOC107587659 coding upstream 198942 20125104 ~ 20127387 (+)
krt1-c5 krt1-c5,LOC107740828,LOC107699777,LOC107552621,LOC107672537,LOC107731028 coding upstream 201997 20117169 ~ 20124332 (+)
LOC122345098 gpsm1a,LOC107587727,LOC107595532,LOC107672581 coding downstream 26156 20733622 ~ 20739157 (+)
LOC122345842 gpsm1a,LOC107587727,LOC107595532,LOC107672581 coding downstream 66933 20774399 ~ 20783388 (+)
ak5l ak5l,LOC107731024,LOC107665022,LOC107740835,LOC107595531,LOC108255392,LOC108423692,LOC107672580 coding downstream 77395 20784861 ~ 20790622 (+)
LOC122344887 cmlc1,LOC107095684,LOC103473836,LOC105934481,LOC102226792,LOC103150158,LOC103390188 coding downstream 84738 20792204 ~ 20792978 (+)
ciz1b LOC107740837,LOC107595499,LOC107665018,LOC107688644 coding downstream 260337 20967803 ~ 20973466 (+)
G38112 LOC107552640,LOC107740808,LOC107731062,LOC107665013,LOC107672520,LOC559520,LOC107587663 non-coding upstream 1774 20322660 ~ 20324555 (+)
LOC122345857 NA non-coding upstream 5911 20319842 ~ 20320418 (+)
G37958 LOC107745529,LOC107672542,LOC107720246,LOC107552607 non-coding upstream 452185 19873242 ~ 19874144 (+)
G37956 NA non-coding upstream 458931 19794443 ~ 19867398 (+)
G37951 NA non-coding upstream 566125 19759711 ~ 19760204 (+)
G38118 ak5l,LOC107731024,LOC107740835,LOC107672580,LOC107665022,LOC107595531,LOC108423692 non-coding downstream 37092 20744558 ~ 20746880 (+)
G38199 NA non-coding downstream 231367 20938833 ~ 20943113 (+)
G38209 NA non-coding downstream 238879 20946345 ~ 20950998 (+)
LOC122345965 NA non-coding downstream 273561 20981027 ~ 20999088 (+)
G38297 NA non-coding downstream 582465 21289931 ~ 21425456 (+)
LOC122345823 LOC107740804,LOC107665032,LOC108255802,LOC107672563,LOC107731037 other upstream 29107 20284617 ~ 20297222 (+)
lix1 lix1,LOC107552634,LOC107699708,LOC107587723,LOC107672536 other upstream 174643 20143283 ~ 20151686 (+)
col27a1b col27a1b,col27a1,LOC107699687,LOC107720196,LOC107552608,LOC107731038,LOC107720245,LOC107672548,LOC107587699 other upstream 290949 19967577 ~ 20035380 (+)
nrarpb nrarpb,nrarpa,nrarp,LOC108255347,LOC107595556 other upstream 616259 19707288 ~ 19710070 (+)
msh3 msh3,LOC107720281 other upstream 1312229 18962322 ~ 19014100 (+)
pappab pappab,LOC107665047,LOC107587665,LOC107667798,LOC107595518,LOC107731007,LOC107740823 other downstream 107955 20815421 ~ 20888271 (+)
cntrl cntrl,LOC107740813,LOC107665016,LOC107688625,LOC107731033,LOC107587713 other downstream 339474 21046940 ~ 21069517 (+)
tecta tecta,LOC107665015,LOC107688634,LOC106603728 other downstream 377482 21084948 ~ 21120840 (+)
LOC122345215 specc1,LOC107712164,LOC107665038,LOC107731042,LOC107688619,LOC107587672 other downstream 472978 21180444 ~ 21260715 (+)
adora2b adora2b,LOC107712140,LOC107665025,LOC107595487,LOC107688642,LOC107731023,LOC107587731 other downstream 554088 21261554 ~ 21270874 (+)

Expression


Co-expression Network