LOC122345834 (lix1,LOC107587723,LOC107672536,LOC107699708,LOC107552634)


Basic Information

Item Value
gene id LOC122345834
gene name lix1,LOC107587723,LOC107672536,LOC107699708,LOC107552634
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 20407768 ~ 20416507 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU56300
CGGGGCTCCACAGACTGCTCTGGAGGCTGGAGAGGGGAAGGCTAATAGGGAACCTCCTTATGTTCATCTTTTCTGGAGCTTAACTGATGTTTTGAACTTCTTCAGAGCATGTGAGAGCTGGAGACAGAGGATTGCTGCCGGACGTGTGGGACTAGCAGTTGGAGATCATGTCTGGACCAGATTCTGATGATGACAGGACCTTCAAAGACTTGAATGTCGTGGGAATGCTTCACCAGTTTTGGGAGCAGAAGCAAGTGAAAGGCATGATGATGGAGACAGACAATCTGGTAGTCTACGAGTCCATTCCCTCACCCGGGCCGCCCTACACATGCTACGTCACTTTACCAGGTGGCAGCTGCTTCGGAAATTTTAAGTACTGCTACAGCAAAGCAGAGGCCAGACGTGACGCCGCTCACATCGCTCTGATGAACTCCACATTTAATGAGTTGCCCTGCCGCCGGATCACTCCTGAGTTCATATCACGCAGCGTGAGAGAAGCCGTCAGCACCACCAGCGGTAACACTGCAGATGCGTCTGACCCCGGTACCAGTATAGGAGCATACTGTCTCATGCTGGAGCTGAACACTGGGAAAACCATGCTGGAATTTCaggaaATAATGACGGTTTT
>XM_043240319.1
TCCACAGACTGCTCTGGAGGCTGGAGAGGGGAAGGCTAATAGGGAACCTCCTTATGTTCATCTTTTCTGGAGCTTAACTGATGTTTTGAACTTCTTCAGAGCATGTGAGAGCTGGAGACAGAGGATTGCTGCCGGACGTGTGGGACTAGCAGTTGGAGATCATGTCTGGACCAGATTCTGATGATGACAGGACCTTCAAAGACTTGAATGTCGTGGGAATGCTTCACCAGTTTTGGGAGCAGAAGCAAGTGAAAGGCATGATGATGGAGACAGACAATCTGGTAGTCTACGAGTCCATTCCCTCACCCGGGCCGCCCTACACATGCTACGTCACTTTACCAGGTGGCAGCTGCTTCGGAAATTTTAAGTACTGCTACAGCAAAGCAGAGGCCAGACGTGACGCCGCTCACATCGCTCTGATGAACTCCACATTTAATGAGTTGCCCTGCCGCCGGATCACTCCTGAGTTCATATCACGCAGCGTGAGAGAAGCCGTCAGCACCACCAGCGGTAACACTGCAGATGCGTCTGACCCCGGTACCAGTATAGGAGCATACTGTCTCATGCTGGAGCTGAACACTGGGAAAACCATGCTGGAATTTCaggaaATAATGAGTTTTCAACTTTTGCACTGGAATGGTACTCTGAAGGCTTTCCGTGAGATGAGATGTAGCCGCCAGGATGTGATCCAGTACTACTCCCAGCAGCGTCTGGATGAGCGCATGCGCAGTCACATGGCACTGGACTGGTTACAGAAGGAGCAGCAATCCCCCGGCCTGCTCTCCCAGGAGCTGCAGCTGGCCATGAAGGAGCTGGGAGAGGCCCGGAGAACAGGCAGGGAACTCCGCTTCTAcaaggagaaaaaagaaatcctGAGCTTAGCTCTCAGTCACGCCAATGCCGAGGATCTGGAGAGCTACCACAGCGAGGACATGTCCTGGAGAGAAGAGACTGAGTTTGAGTACTGCACTCAGGAGGGACGCTGTCTGGAGGGAAGTATGACGGATCCTTCAGAGCACTGCCCGTTTCACTCTCAGGAGAGCGACAGAGAATCGGTGGAGTGAGCTCTGGGAGACAAGAcgtttatactgtacataatcctcttttttatatatacatgttagaTTTTTTAGGCTTCTTTCTTTGACAGCGAAGTCAACTACTTTGGATGCCCCAAAAGAAGCTTACAgcgaacagttcacccaaaaatttaaattctgtctcTCGTGCCGTTCCCAAAATCatgaattaagatatttattagTGGATTGACATTAATTTTATGAAGTTatgagaatgctttttgtgcataaagaaaacaaaaacgatgactttattcaacaataatTTATTCTTCTCGTTTCAATAATGACAGTATGCCACAACACATATGTGTGCATTCTTCTCCTTGCAAACAAGGGTTAAGGCTAGATGGGATACAGCTGCGGCCTACAGAGCTTGTATGCGCGATGGTGTCAGGCTGTCAGGCTGAACAACAATAATTACTCTATTTGCATTGTTGTAAGGGGTACATTTAAAATTTGG

Function

symbol description
lix1 Predicted to be involved in autophagosome maturation. Predicted to be active in cytoplasm. Orthologous to human LIX1 (limb and CNS expressed 1).

NR:

description
PREDICTED: protein limb expression 1 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU56300 False 628 TUCP 0.51 5 20407768 20415355
XM_043240319.1 True 1545 mRNA 0.48 7 20407774 20416507

Neighbor

gene id symbol gene type direction distance location
LOC122345840 cmlc1,LOC107095684,LOC103473836,LOC105934481,LOC102226792,LOC103150158,LOC103390188 coding upstream 28103 20378889 ~ 20379665 (+)
LOC122344786 gpsm1a,LOC107740834,LOC107595532,LOC107587727,LOC107672581 coding upstream 37528 20369045 ~ 20370240 (+)
LOC122345838 fam78aa,LOC107731022,LOC107672534,LOC107740833,LOC107552624,LOC107665027 coding upstream 96318 20308522 ~ 20311450 (+)
rxrab rxrab,LOC107660328,LOC107672569,LOC107740802,LOC107731035,LOC107552637,LOC108255946,LOC108423686,LOC103046247 coding upstream 128579 20232184 ~ 20279189 (+)
LOC122345846 LOC107587725,LOC107660331,LOC107672538,LOC103911143 coding upstream 189720 20211867 ~ 20218048 (+)
LOC122345824 LOC107740804,LOC107665032 coding downstream 248426 20664933 ~ 20677943 (+)
LOC122345098 gpsm1a,LOC107587727,LOC107595532,LOC107672581 coding downstream 317115 20733622 ~ 20739157 (+)
LOC122345842 gpsm1a,LOC107587727,LOC107595532,LOC107672581 coding downstream 357892 20774399 ~ 20783388 (+)
ak5l ak5l,LOC107731024,LOC107665022,LOC107740835,LOC107595531,LOC108255392,LOC108423692,LOC107672580 coding downstream 368354 20784861 ~ 20790622 (+)
LOC122344887 cmlc1,LOC107095684,LOC103473836,LOC105934481,LOC102226792,LOC103150158,LOC103390188 coding downstream 375697 20792204 ~ 20792978 (+)
G38082 NA non-coding upstream 15144 20127401 ~ 20392624 (+)
G38112 LOC107552640,LOC107740808,LOC107731062,LOC107665013,LOC107672520,LOC559520,LOC107587663 non-coding upstream 83213 20322660 ~ 20324555 (+)
LOC122345857 NA non-coding upstream 87350 20319842 ~ 20320418 (+)
G37958 LOC107745529,LOC107672542,LOC107720246,LOC107552607 non-coding upstream 533624 19873242 ~ 19874144 (+)
G37956 NA non-coding upstream 540370 19794443 ~ 19867398 (+)
G38093 NA non-coding downstream 115717 20532224 ~ 20560009 (+)
LOC122345855 NA non-coding downstream 160877 20577384 ~ 20577995 (+)
LOC122345853 NA non-coding downstream 194819 20611326 ~ 20637269 (+)
G38132 NA non-coding downstream 281840 20698347 ~ 20699025 (+)
G38118 ak5l,LOC107731024,LOC107740835,LOC107672580,LOC107665022,LOC107595531,LOC108423692 non-coding downstream 328051 20744558 ~ 20746880 (+)
LOC122345823 LOC107740804,LOC107665032,LOC108255802,LOC107672563,LOC107731037 other upstream 110546 20284617 ~ 20297222 (+)
lix1 lix1,LOC107552634,LOC107699708,LOC107587723,LOC107672536 other upstream 256082 20143283 ~ 20151686 (+)
col27a1b col27a1b,col27a1,LOC107699687,LOC107720196,LOC107552608,LOC107731038,LOC107720245,LOC107672548,LOC107587699 other upstream 372388 19967577 ~ 20035380 (+)
nrarpb nrarpb,nrarpa,nrarp,LOC108255347,LOC107595556 other upstream 697698 19707288 ~ 19710070 (+)
msh3 msh3,LOC107720281 other upstream 1393668 18962322 ~ 19014100 (+)
G38094 olfm1a,LOC107672574,LOC107587661,LOC107552636 other downstream 142320 20558827 ~ 20562352 (+)
pappab pappab,LOC107665047,LOC107587665,LOC107667798,LOC107595518,LOC107731007,LOC107740823 other downstream 398914 20815421 ~ 20888271 (+)
cntrl cntrl,LOC107740813,LOC107665016,LOC107688625,LOC107731033,LOC107587713 other downstream 630433 21046940 ~ 21069517 (+)
tecta tecta,LOC107665015,LOC107688634,LOC106603728 other downstream 668441 21084948 ~ 21120840 (+)
LOC122345215 specc1,LOC107712164,LOC107665038,LOC107731042,LOC107688619,LOC107587672 other downstream 763937 21180444 ~ 21260715 (+)

Expression


Co-expression Network