LOC122345853


Basic Information

Item Value
gene id LOC122345853
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 20611326 ~ 20637269 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU56302
CTGGATGGAGCCGACTGAAGTAGGCGAGATACTTTAGTTATAATAAGTGGATTTTGACAGCGGATCTCTGGCCTCAGTCTCGCGACGTTCCCTACTGGATCTTACCGCGTGCCCGCTGggggaaaataaattattatctgCAAGAAAACAGAGCTGGCATGCGCTAATATGGAAACCAAACCATTCTTGTCTCTAGggcTCCTGAAAAACCCCTGCTCAGTAGCGCCGCCGTGTTTGCGGAGCCGGCCGGGCGACGCTGGCGGTTCGCCCAATGGCTGCTCCGGCTTCACGGGTACCTACCCGCTGCAACAGCGCAGGATATCCACAGACTCCTCTGTTCAGCTGT
>TU56303
CTGGATGGAGCCGACTGAAGTAGGCGAGATACTTTAGTTATAATAAGTGGATTTTGACAGCGGATCTCTGGCCTCAGTCTCGCGACGTTCCCTACTGGATCTTACCGCGTGCCCGCTGggggaaaataaattattatctgCAAGAAAACAGAGCTGGCATGCGCTAATATGGAAACCAAACCATTCTTGTCTCTAGggcTCCTGAAAAACCCCTGCTCAGTAGCGCCGCCGTGTTTGCGGAGCCGGCCGGGCGACGCTGGCGGTTCGCCCAATGGCTGCTCCGGCTTCACGGGTACCTACCCGCTGCAACAGCGCAGGATATCCACAGGTATaaag
>XR_006251039.1
TGTCGTCTAAAACGGCGAAGGGCTATAGTCACACCAGCGGGcctataatacatattttaatgcaattatctTATAGTCTGAAGGGGGTGTTTGCAAGAGTACCAGCACCACACTGGAAAAAGTATGACTCGTCGCTGCAAAAGTGCTGGTGGTCCGAGTCCCCCTCGGCAGGGTCCCTCCGGTGAGGCAGTGCTTGATCGCTGAAGGAATACTGGGAGCGAGTGAGCGAGCGCTCTCGCGGAGTTACAAACTGGATGGAGCCGACTGAAGTAGGCGAGATACTTTAGTTATAATAAGTGGATTTTGACAGCGGATCTCTGGCCTCAGTCTCGCGACGTTCCCTACTGGATCTTACCGCGTGCCCGCTGggggaaaataaattattatctgCAAGAAAACAGAGCTGGCATGCGCTAATATGGAAACCAAACCATTCTTGTCTCTAGggcTCCTGAAAAACCCCTGCTCAGTAGCGCCGCCGTGTTTGCGGAGCCGGCCGGGCGACGCTGGCGGTTCGCCCAATGGCTGCTCCGGCTTCACGGGTACCTACCCGCTGCAACAGCGCAGGATATCCACAGACTCCTCTGTTCAGCTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU56302 False 346 lncRNA 0.55 3 20611576 20637269
TU56303 False 336 lncRNA 0.54 2 20611576 20625444
XR_006251039.1 True 596 lncRNA 0.54 3 20611326 20637269

Neighbor

gene id symbol gene type direction distance location
LOC122345840 cmlc1,LOC107095684,LOC103473836,LOC105934481,LOC102226792,LOC103150158,LOC103390188 coding upstream 231661 20378889 ~ 20379665 (+)
LOC122344786 gpsm1a,LOC107740834,LOC107595532,LOC107587727,LOC107672581 coding upstream 241086 20369045 ~ 20370240 (+)
LOC122345838 fam78aa,LOC107731022,LOC107672534,LOC107740833,LOC107552624,LOC107665027 coding upstream 299876 20308522 ~ 20311450 (+)
rxrab rxrab,LOC107660328,LOC107672569,LOC107740802,LOC107731035,LOC107552637,LOC108255946,LOC108423686,LOC103046247 coding upstream 332137 20232184 ~ 20279189 (+)
LOC122345846 LOC107587725,LOC107660331,LOC107672538,LOC103911143 coding upstream 393278 20211867 ~ 20218048 (+)
LOC122345824 LOC107740804,LOC107665032 coding downstream 27664 20664933 ~ 20677943 (+)
LOC122345098 gpsm1a,LOC107587727,LOC107595532,LOC107672581 coding downstream 96353 20733622 ~ 20739157 (+)
LOC122345842 gpsm1a,LOC107587727,LOC107595532,LOC107672581 coding downstream 137130 20774399 ~ 20783388 (+)
ak5l ak5l,LOC107731024,LOC107665022,LOC107740835,LOC107595531,LOC108255392,LOC108423692,LOC107672580 coding downstream 147592 20784861 ~ 20790622 (+)
LOC122344887 cmlc1,LOC107095684,LOC103473836,LOC105934481,LOC102226792,LOC103150158,LOC103390188 coding downstream 154935 20792204 ~ 20792978 (+)
LOC122345855 NA non-coding upstream 33331 20577384 ~ 20577995 (+)
G38093 NA non-coding upstream 51317 20532224 ~ 20560009 (+)
G38091 LOC107699781,LOC107552636,LOC107587661,LOC107672574 non-coding upstream 59020 20170974 ~ 20552306 (+)
G38082 NA non-coding upstream 218702 20127401 ~ 20392624 (+)
G38112 LOC107552640,LOC107740808,LOC107731062,LOC107665013,LOC107672520,LOC559520,LOC107587663 non-coding upstream 286771 20322660 ~ 20324555 (+)
G38132 NA non-coding downstream 61078 20698347 ~ 20699025 (+)
G38118 ak5l,LOC107731024,LOC107740835,LOC107672580,LOC107665022,LOC107595531,LOC108423692 non-coding downstream 107289 20744558 ~ 20746880 (+)
G38199 NA non-coding downstream 301564 20938833 ~ 20943113 (+)
G38209 NA non-coding downstream 309076 20946345 ~ 20950998 (+)
LOC122345965 NA non-coding downstream 343758 20981027 ~ 20999088 (+)
G38094 olfm1a,LOC107672574,LOC107587661,LOC107552636 other upstream 48974 20558827 ~ 20562352 (+)
G38092 LOC107699781,LOC107552636,LOC107587661,LOC107672574 other upstream 97410 20185035 ~ 20513916 (+)
LOC122345834 lix1,LOC107587723,LOC107672536,LOC107699708,LOC107552634 other upstream 194819 20407768 ~ 20416507 (+)
LOC122345823 LOC107740804,LOC107665032,LOC108255802,LOC107672563,LOC107731037 other upstream 314104 20284617 ~ 20297222 (+)
lix1 lix1,LOC107552634,LOC107699708,LOC107587723,LOC107672536 other upstream 459640 20143283 ~ 20151686 (+)
pappab pappab,LOC107665047,LOC107587665,LOC107667798,LOC107595518,LOC107731007,LOC107740823 other downstream 178152 20815421 ~ 20888271 (+)
cntrl cntrl,LOC107740813,LOC107665016,LOC107688625,LOC107731033,LOC107587713 other downstream 409671 21046940 ~ 21069517 (+)
tecta tecta,LOC107665015,LOC107688634,LOC106603728 other downstream 447679 21084948 ~ 21120840 (+)
LOC122345215 specc1,LOC107712164,LOC107665038,LOC107731042,LOC107688619,LOC107587672 other downstream 543175 21180444 ~ 21260715 (+)
adora2b adora2b,LOC107712140,LOC107665025,LOC107595487,LOC107688642,LOC107731023,LOC107587731 other downstream 624285 21261554 ~ 21270874 (+)

Expression


Co-expression Network