G39057


Basic Information

Item Value
gene id G39057
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 24087880 ~ 24088812 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU57825
gcatttattttttcacatagACATGTACATAGGTGGTAAATATATGGTTGTGAACAAGAAAGCGCTTAGATACAATCTCAGGTGACTACTAAccatacaaaaaaatgacagttcCTTTCGTCAAAAGGGTACTGTGCACTTGACCTCAGAAAAAGCCCTTGCTTTTAATCATATCTCCTTGTGTTGACATACCAAACTAGAGGTTTTCATGAGGAATGTGTTTTTCTTGATAGCTTTTCCTGCCAAGTCATGTTTATATGACAAAAGTGAAACTAATGAGCTTTAGTGAACGCGGCACAGTAACATTAGACATGCATTCCttaaggggggaaaaaaaaaaggctcgCTCTCAAGCCATTACAAAACCAGCTTTCTTTGTTCTGAGGacgacaaaaatatattttgaaacacaaaatgttGAACTTTACCTTTAATTGTGctggaaaatgtcattttagatcAGATGgcactataacacacacacacacagtcgaTATCAGAAACTGTGTCAAATGAAAATAGCAGTGCAGGTCAAACAGATTTATTGCTATGGCATTTCTGTGCCGTTATGCGCATGCACAGTGTGTTTTGAGTGACCGTGTCCATCTGAAGTGGCGAGCATGGCCACCACGACGGCCAATATAAGAGCAGCTGAAATCAGTACAGTGACCACGAGTCCTTTATTAGTCCGCAGGTACCGCATCTTCTGGCTCACAACAGAttccttacatttttttTACGGTGCACTGAGGCCTTTCAGGTTTTTGATTGACGTCTTTGAGTtcttctgatttattttcattttccagcatAGCAACTTTCACCTCTTCTGCCTCAGTCTTATCATTCTGAATATTGT

Function

GO:

id name namespace
GO:0005768 endosome cellular_component
GO:0044433 obsolete cytoplasmic vesicle part cellular_component
GO:0044440 obsolete endosomal part cellular_component
GO:0097708 intracellular vesicle cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0010008 endosome membrane cellular_component
GO:0031982 vesicle cellular_component

KEGG:

id description
ko04514 Cell adhesion molecules

RNA

RNA id representative length rna type GC content exon number start site end site
TU57825 True 859 lncRNA 0.39 2 24087880 24088812

Neighbor

gene id symbol gene type direction distance location
fkbp6 fkbp6,LOC107695148,LOC107600609,LOC107691791,LOC107728208,LOC103911693,LOC107730305 coding downstream 1376 24082446 ~ 24086504 (-)
fzd9a LOC107600608,LOC107728207,LOC107691792,LOC107695150,LOC107572577,LOC107730317 coding downstream 15017 24070279 ~ 24072863 (-)
mrm1 mrm1,LOC107695155,LOC107603181,LOC107730354 coding downstream 45143 24039706 ~ 24042737 (-)
lhx1b lhx1b,lhx1,LOC107728209,LOC107691793,LOC107600607,LOC107695154,LOC107730325,LOC107603180 coding downstream 91604 23991291 ~ 23996276 (-)
tmem232 LOC107691726,LOC107751260 coding downstream 347484 23733743 ~ 23740396 (-)
tmem150ab tmem150ab,LOC107684378,LOC107600579,LOC107572579,LOC107728219,LOC107691718 coding upstream 3568 24092380 ~ 24098174 (-)
ntrk2b ntrk2b,LOC107691713,LOC107728215,LOC107600581,LOC107730333,LOC107596017,LOC108443857,LOC103044160,LOC108259739,LOC107684341 coding upstream 77396 24166208 ~ 24187485 (-)
pcsk5a pcsk5a,LOC107728213,LOC107691788,LOC107684380,LOC107730328,LOC107596014,LOC107600598 coding upstream 141534 24230346 ~ 24252631 (-)
LOC122345102 LOC107691787,LOC107600611,LOC107684345,LOC107595997,LOC107684346 coding upstream 164521 24253333 ~ 24264718 (-)
LOC122345313 LOC107681049,LOC107706956,LOC107574963 coding upstream 209718 24298530 ~ 24317831 (-)
G39050 NA non-coding downstream 17966 24068630 ~ 24069914 (-)
G39034 NA non-coding downstream 109353 23977176 ~ 23978527 (-)
G38982 NA non-coding downstream 184982 23902619 ~ 23902898 (-)
G38892 NA non-coding downstream 418011 23666841 ~ 23669869 (-)
G38769 NA non-coding downstream 729733 23357574 ~ 23358147 (-)
G39059 NA non-coding upstream 13029 24101841 ~ 24107263 (-)
G39120 NA non-coding upstream 123630 24212442 ~ 24212759 (-)
G39121 NA non-coding upstream 125714 24214526 ~ 24215160 (-)
G39122 NA non-coding upstream 129288 24218100 ~ 24218430 (-)
G39123 NA non-coding upstream 130181 24218993 ~ 24219527 (-)
aatf LOC107695156,LOC107730321,LOC107600606,LOC107603183 other downstream 90141 23979664 ~ 23997739 (-)
G38973 NA other downstream 200200 23887303 ~ 23887680 (-)
G38917 LOC107691721,LOC107751254,LOC107564048,LOC107721650,LOC107603186,LOC107663788 other downstream 331292 23751880 ~ 23756588 (-)
LOC122345364 NA other downstream 482132 23602236 ~ 23605748 (-)
nrgna nrgna other downstream 955872 23127212 ~ 23132008 (-)
G39113 NA other upstream 108893 24197705 ~ 24200496 (-)
tmc2a tmc2a,tmc1,LOC107684381,LOC107596032,LOC108437175,LOC107730318,LOC108259782 other upstream 176652 24265464 ~ 24277304 (-)
anapc2 anapc2,LOC107559737,LOC107730340,LOC107746468,LOC107683706,LOC107595991,LOC107684355 other upstream 498912 24587724 ~ 24594116 (-)
naa38 naa38 other upstream 657860 24746672 ~ 24748610 (-)
LOC122345923 NA other upstream 665390 24754202 ~ 24758668 (-)

Expression


Co-expression Network