G40268 (LOC107741500,LOC107562332,LOC107704753)


Basic Information

Item Value
gene id G40268
gene name LOC107741500,LOC107562332,LOC107704753
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 29801194 ~ 29805802 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU59589
GACACTGGGAATgaaagagattttatttttgacaataaCAGTGACACGTTGCAGTAGACATAATTGTttcttatttgaataaaaaaagcagtttaatgGTTCATTATAAACTTTCGTAAGGAACTTGAATGAAAGCGCGTCGTGGCGATGCTACGCTACAGGCAAAGCTCAGCTATTGTTAGTAGGCTACTTCAATGTTTGAGACCAAGATCTCCTCAAACACCTTCTTCTCCCTCTGATTGTCGGCGCTCGGAGCTCGAACATTTACCGGCTCCCAGTGAACTCCACCAACCTTCACGCAAACGTTAAAGTGCTGCCGTTATTTACTACAAGGAGAAACACACGTGTAAGTAGTGCAGACGGGACGCGAGAACTGCTCATCGGATCGATCTGTGGAGAAACAGCATGCAGTTATAGGCAGATCTTTAATGCGCATATTAATTTGAATGATTCAACAAGTCTTTCGGCTGCACAGCACCCCGACGGAGGAATACACATTTATGCTAAAACACTGTGCCGAATCCTAAGGGTGTTTTCActccaaaatcaaaataataaaacaagaaacgATCATTTGCATAAAGAAGAGGAAGGGCCAAGACATTAGCATTACAATTTCTTTAGCATATGCATTCTTCTGATAGGATAAACATCTGAAAACAGACGTTTTTGTTACATTCATTGGCCATTATTAGGTTATTTGTAATTTGGCAAGAGCCAAATGATGAAATTCTGGACCACTGCAATGAATATGTTGCTCATGTTATTCATTCGTTCGCCTTGACGGAGTTTGCGTATCATGAATCTGCTTCTCTCGGATTCATCATGCGCAGCGTTGAACATCACAGATGTTCCCTCACAAACGCTCGTCtcgttctcacacacacacacacacgagcaaaACCTCAGAGCTGAACGTTAGTGCTGATATTCGGTAAATGCTCGGCCTTACTGAAGGAGCTCCTACGCTACTGTTCCAACAGAAATCTATAAATTAGTACATTACGTATATTTGAACCTACCCGATCTCACGAATCAGTGTATAAATAGTACGCCAAACGAAAACGAAAACTCGTGGTAGATACTCACATGCACGTGAAAATTGCGCATTATGTATAAGACTATATAATCTGGTTTTAATATACAAGACTATAGaataacttaaaaatacttCACGCCAAACACGTTTATCACAAATGTGCCAAAGTTATTTTTTGCGTATCAATACCACTAGCTGCCgtttttatttggtgtactatttataaaaagtttttaggTAGACCGGACTGTTTGAACAGCTGCAACAAACAGCTTCAAGCTTTACAAGTTAATAAAGTTTCCATGTTATCTAGTGCCTGAAAAACAAAGCTGGAAGATTGAGACGAGATACTTGGGGGGCTTCTGGGTAAATAAGTATAGGAAAAGAGGAGCGTAAAAATACTAGTGTAAGACTGGCCTTGGTGATCATATGTTAGTTCCAGCACATTTTAATTGCAGCCAGCCGACTATTTCTACCTTTAGAAATGTATTGCTATCGCTCTAAATAGTCACAGACTACATAAATATGAAATCGAACAGCATTAATCAGACCGTACGAGCCATCTGTCAGTTCTGTTCAAAATCTTCAGGTGCGTTGAGCCGTTTTTAGCACGAAAAACCAACATCTGTGATGAGCATCCAGCAATTGcataacatttttgcataatttcccACACTGTCttcaaaaatgatcattttttttccatctcatCGAAAACATTCTGAAGAGTCATGATGGTATCAGTAGTCACAATAAGGCACAAGTTCTTCAACCTCAACAAAATCAAGACCATTATTCCTCCCCAATAAGATATGAGACAGGCATCTGACTGACTCAAGCTTGAATAAAACGCTCAGgctaataataaaacaggagAAATGGGTGAAGATGAAGGTTTTGTACTCTCCACAAGAAAGGGACACCAAatcaaaagcacaaatatgtCCTTAGTTTAGTCTTTGTCATCTAGTGTTGATCAGAATCGtgacagctgtcaatcaacGGCACTGAGGCACTTTAACACACAACAACCGACAGTGCAAAATAAACCCAAATCAGTAGATCTTAACATTACAACCGAAGatgaatttctgaaaaaaaaaaaaaaaaccataccTGGAGATTCTGATAACTACAATATTAAAAGCATGACAAATACACAACGCTTTTAAAGCTTCAGAGAAAATATGACATGTTGGTCATTAATCTCAAAAAGAACATTCATATTGCTCCCCAAAAATCAAAGAAATGATATTTCTcgtgaagaaaagaaaaatatcaagTGTATTCCAACCCCACTTGAACTTCATATGGCCAGAGGTCATTTCTATTTGATTTTGGGTCTATGTGGGTGTTTCTCGTCACCCATAGTGCGACATGTTGGGCAAAACactcgttttttttaaaaacaaatccaatttgtgtcatttttaagaCGCTGAAGCATGGATAGGGTTCATTTGTTATAGTGCATGAGACAGAAATGTATAAGGAACAAAAACGCTACGCGCATAAAGCAAAACCTACATGAGGAGTGAACAGAATCACTCAGAGACACGGACATCGCTCTTAGTGCCGCTCACAAAAAGTCTTCAGCAGCTGCAGTCGAAACCTCGCAGCCGCTCTACATCACCTCCTTAAACTCGTCAAGTGCAAATATAACGAAGCCAGCTAGATTCATCAAACAGTTTACAGTACAGAAAAACCCCACCGCTTCGACTCCAGACAGCAACACACACCGTGAAAACCCGACCTGTCGACTATttctttcaggaaaaaaatCATCACTGTCCGACAAACAGTCCTTACATAAGCAGTagaagttttgtttgtttgtttttcggGGATGCGAATTATAATCAAGCCTGTAAAGTTGTATCCGATTTGGCATGCAAGCAGTTGAAGTGAGCGCTCATTCCAGCAGCATCAGCGTGCGTTTGTTTCGAAAGGATCGGCAAAATGTCTGATTTCATCCATGTGTCGGCTGTTCAAGTGAGCGTGAGGATCTGTCCGCACGTCAGCGTTCAGATGAAGTCAAACACACGCAGGCATCGCTCTTCTGAAGGGACGATCACTCACGCGGCCGTCAAACACGCGAAGATGACCGAAGTGTTCAAACCGAACATGAAATGTCACGCAACGCTCatgaaatgcatcattttagcTTCAGGCACTCTattaaaagcaacatttcttgAAATGGTAAAAGAATCTCCTAAAAACATGCCCAGATTGCACAAAATCACGCTTGGGACCATTATGgtcacaaatgaaaataaccGATCTCAAATtctcaaaaaaagttaaataaataaaaaatctaagcAATAATCAATGATTGTAATAGATTAACCTACTAATAtacaatcaaaatatttatttgtgcatttatccatatatttgtatattattattttagattaaactGGAATTAACTgtcacacaaataaacaccCAGTCAGTGGatgatactatatatatatatgtcgtaaaacatacataaactgTGATATTGTTTTTCATACTTAAATTTTATCTTCCGAAATATATGCCACTTTAGGGTTGACAGCAATCCAATTTAGCTATAAATCTGATTATAAACTGATTTCTGGATGCACATAAGCAAAGCTTTTGGTATGAACGGTGATGGTTCAtccttatttttttccctcttctttTGGGGTGTAAAGTGATCCGGTCATGTTTTAGTGAGATTCGCTGCTATATTCATTGCAAAGTGATCTCAGAACATAATATAATGTTTCACAACGAAGGTCAGCCGCCGTGCCACTGGCATGATTTCCTCTCATGATCCATGACTTCTGCTCTCTGAAGCACATGATGAACATCCTGCCAAATCCAGTGTTTGAATCAAAATGCACATGAATAAGGTTGTGTGTTCTTCACGAGtgatgcctgtgtgtgtttgattgccCCCGCCAGTGTTTATTCACATGGTGGATATGAACTGTAGGCTGTTTTCTCCAGTCTCATTGCCCATTTATTCTCAGGCCGTCAACAAACTCCTCCTCCTGCTGCCTCTCGGGAGGTGTGGCCACGGCAGCCCCACCCTCAGCTCCAGGTTTGACAGGCCCCGCCCCTAATGTCCCATCTGCGCCGTCAGTCTGGGCCTCTTCCTCTTCGTCCTCCTCAGCCTGCGTCTCCTCCTCGCCTCCATCCCTTGGGAGATCTGGGCCGTCGCCGTCCAGTGGTAAATGAGTTCTCGCGGCTTCCTTGCGCTCGGCGTAGAGGCTCAGACCCGAGGGAAGCAGGTTTTTAAAGTCCGTCTCAAAGGGCAGCTGAACGCCAACCGGGAGGCCACCGATGCCCAGACTGACACCCGCCGCCACTGATGATCCCTGGTAAACCTCCATCCCATCCGGCAACATGGACTGGATCTTGGGAAGCCAGCGCTTTCGCACACGCCGTGCATTGGTGCACATGTCAGCAGCGATGACGTTCATCTCACTTTCCTTAAAGTTGGGCGCGAAGTTCTGACAGT
>TU59596
GACACTGGGAATgaaagagattttatttttgacaataaCAGTGACACGTTGCAGTAGACATAATTGTttcttatttgaataaaaaaagcagtttaatgGTTCATTATAAACTTTCGTAAGGAACTTGAATGAAAGCGCGTCGTGGCGATGCTACGCTACAGGCAAAGCTCAGCTATTGTTAGTAGGCTACTTCAATGTTTGAGACCAAGATCTCCTCAAACACCTTCTTCTCCCTCTGATTGTCGGCGCTCGGAGCTCGAACATTTACCGGCTCCCAGTGAACTCCACCAACCTTCACGCAAACGTTAAAGTGCTGCCGTTATTTACTACAAGGAGAAACACACGTGTAAGTAGTGCAGACGGGACGCGAGAACTGCTCATCGGATCGATCTGTGGAGAAACAGCATGCAGTTATAGGCAGATCTTTAATGCGCATATTAATTTGAATGATTCAACAAGTCTTTCGGCTGCACAGCACCCCGACGGAGGAATACACATTTATGCTAAAACACTGTGCCGAATCCTAAGGGTGTTTTCActccaaaatcaaaataataaaacaagaaacgATCATTTGCATAAAGAAGAGGAAGGGCCAAGACATTAGCATTACAATTTCTTTAGCATATGCATTCTTCTGATAGGATAAACATCTGAAAACAGACGTTTTTGTTACATTCATTGGCCATTATTAGGTTATTTGTAATTTGGCAAGAGCCAAATGATGAAATTCTGGACCACTGCAATGAATATGTTGCTCATGTTATTCATTCGTTCGCCTTGACGGAGTTTGCGTATCATGAATCTGCTTCTCTCGGATTCATCATGCGCAGCGTTGAACATCACAGATGTTCCCTCACAAACGCTCGTCtcgttctcacacacacacacacacgagcaaaACCTCAGAGCTGAACGTTAGTGCTGATATTCGGTAAATGCTCGGCCTTACTGAAGGAGCTCCTACGCTACTGTTCCAACAGAAATCTATAAATTAGTACATTACGTATATTTGAACCTACCCGATCTCACGAATCAGTGTATAAATAGTACGCCAAACGAAAACGAAAACTCGTGGTAGATACTCACATGCACGTGAAAATTGCGCATTATGTATAAGACTATATAATCTGGTTTTAATATACAAGACTATAGaataacttaaaaatacttCACGCTTATTTTTTGCGTATCAATACCACTAGCTGCCgtttttatttggtgtactatttataaaaagtttttaggTAGACCGGACTGTTTGAACAGCTGCAACAAACAGCTTCAAGCTTTACAAGTTAATAAAGTTTCCATGTTATCTAGTGCCTGAAAAACAAAGCTGGAAGATTGAGACGAGATACTTGGGGGGCTTCTGGGTAAATAAGTATAGGAAAAGAGGAGCGTAAAAATACTAGTGTAAGACTGGCCTTGGTGATCATATGTTAGTTCCAGCACATTTTAATTGCAGCCAGCCGACTATTTCTACCTTTAGAAATGTATTGCTATCGCTCTAAATAGTCACAGACTACATAAATATGAAATCGAACAGCATTAATCAGACCGTACGAGCCATCTGTCAGTTCTGTTCAAAATCTTCAGGTGCGTTGAGCCGTTTTTAGCACGAAAAACCAACATCTGTGATGAGCATCCAGCAATTGcataacatttttgcataatttcccACACTGTCttcaaaaatgatcattttttttccatctcatCGAAAACATTCTGAAGAGTCATGATGGTATCAGTAGTCACAATAAGGCACAAGTTCTTCAACCTCAACAAAATCAAGACCATTATTCCTCCCCAATAAGATATGAGACAGGCATCTGACTGACTCAAGCTTGAATAAAACGCTCAGgctaataataaaacaggagAAATGGGTGAAGATGAAGGTTTTGTACTCTCCACAAGAAAGGGACACCAAatcaaaagcacaaatatgtCCTTAGTTTAGTCTTTGTCATCTAGTGTTGATCAGAATCGtgacagctgtcaatcaacGGCACTGAGGCACTTTAACACACAACAACCGACAGTGCAAAATAAACCCAAATCAGTAGATCTTAACATTACAACCGAAGatgaatttctgaaaaaaaaaaaaaaaaccataccTGGAGATTCTGATAACTACAATATTAAAAGCATGACAAATACACAACGCTTTTAAAGCTTCAGAGAAAATATGACATGTTGGTCATTAATCTCAAAAAGAACATTCATATTGCTCCCCAAAAATCAAAGAAATGATATTTCTcgtgaagaaaagaaaaatatcaagTGTATTCCAACCCCACTTGAACTTCATATGGCCAGAGGTCATTTCTATTTGATTTTGGGTCTATGTGGGTGTTTCTCGTCACCCATAGTGCGACATGTTGGGCAAAACactcgttttttttaaaaacaaatccaatttgtgtcatttttaagaCGCTGAAGCATGGATAGGGTTCATTTGTTATAGTGCATGAGACAGAAATGTATAAGGAACAAAAACGCTACGCGCATAAAGCAAAACCTACATGAGGAGTGAACAGAATCACTCAGAGACACGGACATCGCTCTTAGTGCCGCTCACAAAAAGTCTTCAGCAGCTGCAGTCGAAACCTCGCAGCCGCTCTACATCACCTCCTTAAACTCGTCAAGTGCAAATATAACGAAGCCAGCTAGATTCATCAAACAGTTTACAGTACAGAAAAACCCCACCGCTTCGACTCCAGACAGCAACACACACCGTGAAAACCCGACCTGTCGACTATttctttcaggaaaaaaatCATCACTGTCCGACAAACAGTCCTTACATAAGCAGTagaagttttgtttgtttgtttttcggGGATGCGAATTATAATCAAGCCTGTAAAGTTGTATCCGATTTGGCATGCAAGCAGTTGAAGTGAGCGCTCATTCCAGCAGCATCAGCGTGCGTTTGTTTCGAAAGGATCGGCAAAATGTCTGATTTCATCCATGTGTCGGCTGTTCAAGTGAGCGTGAGGATCTGTCCGCACGTCAGCGTTCAGATGAAGTCAAACACACGCAGGCATCGCTCTTCTGAAGGGACGATCACTCACGCGGCCGTCAAACACGCGAAGATGACCGAAGTGTTCAAACCGAACATGAAATGTCACGCAACGCTCatgaaatgcatcattttagcTTCAGGCACTCTattaaaagcaacatttcttgAAATGGTAAAAGAATCTCCTAAAAACATGCCCAGATTGCACAAAATCACGCTTGGGACCATTATGgtcacaaatgaaaataaccGATCTCAAATtctcaaaaaaagttaaataaataaaaaatctaagcAATAATCAATGATTGTAATAGATTAACCTACTAATAtacaatcaaaatatttatttgtgcatttatccatatatttgtatattattattttagattaaactGGAATTAACTgtcacacaaataaacaccCAGTCAGTGGatgatactatatatatatatatatatatatatatatatatatatatatatatatatatatatatgtcgtaaaacatacataaactgTGATATTGTTTTTCATACTTAAATTTTATCTTCCGAAATATATGCCACTTTAGGGTTGACAGCAATCCAATTTAGCTATAAATCTGATTATAAACTGATTTCTGGATGCACATAAGCAAAGCTTTTGGTATGAACGGTGATGGTTCAtccttatttttttccctcttctttTGGGGTGTAAAGTGATCCGGTCATGTTTTAGTGAGATTCGCTGCTATATTCATTGCAAAGTGATCTCAGAACATAATATAATGTTTCACAACGAAGGTCAGCCGCCGTGCCACTGGCATGATTTCCTCTCATGATCCATGACTTCTGCTCTCTGAAGCACATGATGAACATCCTGCCAAATCCAGTGTTTGAATCAAAATGCACATGAATAAGGTTGTGTGTTCTTCACGAGtgatgcctgtgtgtgtttgattgccCCCGCCAGTGTTTATTCACATGGTGGATATGAACTGTAGGCTGTTTTCTCCAGTCTCATTGCCCATTTATTCTCAGGCCGTCAACAAACTCCTCCTCCTGCTGCCTCTCGGGAGGTGTGGCCACGGCAGCCCCACCCTCAGCTCCAGGTTTGACAGGCCCCGCCCCTAATGTCCCATCTGCGCCGTCAGTCTGGGCCTCTTCCTCTTCGTCCTCCTCAGCCTGCGTCTCCTCCTCGCCTCCATCCCTTGGGAGATCTGGGCCGTCGCCGTCCAGTGGTAAATGAGTTCTCGCGGCTTCCTTGCGCTCGGCGTAGAGGCTCAGACCCGAGGGAAGCAGGTTTTTAAAGTCCGTCTCAAAGGGCAGCTGAACGCCAACCGGGAGGCCACCGATGCCCAGACTGACACCCGCCGCCACTGATGATCCCTGGTAAACCTCCATCCCATCCGGCAACATGGACTGGATCTTGGGAAGCCAGCGCTTTCGCACACGCCGTGCATTGGTGCACATGTCAGCAGCGATGACGTTCATCTCACTTTCCTTAAAGTTGGGCGCGAAGTTCTGACAGT

Function

NR:

description
PREDICTED: RNA-binding protein 6-like isoform X7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59589 False 4541 lncRNA 0.41 2 29801194 29805802
TU59596 True 4556 lncRNA 0.41 3 29801194 29805802

Neighbor

gene id symbol gene type direction distance location
gpsm1b LOC107741501,LOC107704761,LOC107562333,LOC107597941,LOC107674924,LOC107744057 coding downstream 102568 29673233 ~ 29698626 (-)
ak1 ak1,kad,LOC107704768,LOC107715674,LOC107674927 coding downstream 131009 29661018 ~ 29670185 (-)
LOC122345545 LOC107728794,LOC107590009,LOC107696375,LOC107696371,LOC107578696,LOC108263699 coding downstream 465506 29325983 ~ 29335688 (-)
LOC122345544 ubr2,LOC107669566,LOC107696377 coding downstream 477509 29303143 ~ 29323685 (-)
brinp1 brinp1 coding downstream 530494 29174951 ~ 29270700 (-)
fam78ab fam78ab,fam78a,LOC107704739,LOC107562331,LOC107674928,LOC107745627,LOC107741498,LOC107597938 coding upstream 32837 29838639 ~ 29846990 (-)
prrc2b prrc2b,LOC107704672 coding upstream 53750 29859552 ~ 29880103 (-)
LOC122344958 LOC107690080,LOC107566862,LOC107728455 coding upstream 105110 29910912 ~ 29919495 (-)
sapcd2 LOC107742165,LOC107660368,LOC107565658 coding upstream 123021 29928823 ~ 29943177 (-)
LOC122344964 LOC107721044,LOC107563395,LOC107558067 coding upstream 161605 29967407 ~ 29970909 (-)
G40266 NA non-coding downstream 115467 29685128 ~ 29685727 (-)
G40264 NA non-coding downstream 154181 29646617 ~ 29647013 (-)
G40083 NA non-coding downstream 1470718 28326897 ~ 28330476 (-)
G40081 NA non-coding downstream 1508257 28292726 ~ 28292937 (-)
G40079 pappaa,LOC107739977,LOC107558864,LOC107675511,LOC107556005,LOC107728218 non-coding downstream 1545987 28254921 ~ 28255207 (-)
LOC122344857 NA non-coding upstream 233652 30039454 ~ 30046148 (-)
LOC122345788 NA non-coding upstream 247810 30053612 ~ 30054797 (-)
G40422 NA non-coding upstream 300040 30105842 ~ 30106738 (-)
G40418 NA non-coding upstream 310606 30116408 ~ 30117863 (-)
G40654 NA non-coding upstream 491592 30297394 ~ 30419407 (-)
eng LOC107562335,LOC107704777,LOC107741503 other downstream 146133 29614719 ~ 29655061 (-)
G40182 brinp1,LOC107715673,LOC107674904 other downstream 310990 29460585 ~ 29490204 (-)
LOC122345120 LOC107728794,LOC107696375,LOC107590009,LOC107739482 other downstream 475079 29323982 ~ 29326115 (-)
G40080 pappaa,pappa,LOC107556005,LOC107558864,LOC107739977,LOC107675511,LOC107728218 other downstream 1536490 28255828 ~ 28264704 (-)
LOC122344874 NA other downstream 1905740 27886041 ~ 27895454 (-)
LOC122344966 LOC107749532,LOC107566852,LOC107742171,LOC107565644,LOC107690083 other upstream 118900 29924702 ~ 29928675 (-)
rnf170 rnf170,LOC107721034,LOC107687247 other upstream 282164 30087966 ~ 30093576 (-)
fubp3 fubp3,LOC107689604,LOC107687236,LOC106566971 other upstream 785041 30590843 ~ 30613141 (-)
G40711 NA other upstream 825226 30631028 ~ 30733360 (-)
G40713 lzts3,LOC107567954,LOC107687254,LOC107574519,LOC795227,LOC107665914 other upstream 983831 30789633 ~ 30792719 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G256022 NA non-coding CI01000059 null 8427995 ~ 8434595 (+)