LOC122345983


Basic Information

Item Value
gene id LOC122345983
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 30708773 ~ 30710678 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU60290
GAGCCGTCCGGGTCCTGCGGATGCGAGCTGGGAAAACCGGCAGACGCCTGGACTCCtagaggatgaagaggaggatgaggggCAGTATCTTCATCTTTTAGCGAGGGATGTGGAGTCTGATGAAGTGATGCGACGGGAATCACGCAGAAGAACCAGAAAGAGTCGGATCTTCAGCCGTGAAGGAGATTGTTTCAGAGTGTGCAGCAGAGTTTTAGGGAATTTCTGTGTGACACATGAAACCGCAGCGAGCGCATCATCACTCTCcacaggaaacaggaagtttCATCGGTGACACGAGCCCGTCCCGCCTGCCCAGTGTTCAGACTACCTGTTCAGGAAGTAGTGTTTGTACAGTAGTCTGCACATTGGTTAGGCTGGACGGGGATGCTCGAGACGGAGCGTCGCCATGACGACAGCCAGACACATCGCCA
>XR_006251069.1
acacacactcacacacacacacacactcactcacacacacacacacacacacacacacacacacacacacactcttatcaGGACCGTAGTGTATCATCTTTAAGTAAACCGACTAAGTGCACTAGTAAGATGAAGTTAAAGCAGAGCCGACCCTCTTTATACTCGATCTGACCTCCCACATCAGATCTGGTCCTGATTTCCACacagttatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtggggggggtcTTCCAGCATAAAGGCCTCTTTATTCACGCCGGACAGGGAAAGGAAATCggtttcagaagaaaaaacaggCCAGCACACCACAGGCCCGCACATCTGGAGTTATTACAAGCCCGCCGTCTTGCCAAGAAACTCCGACATTCCTGCAGCGCTGCAgagccccacacacacacacacacacacacacacacacacacgctacatGCACCCCAACCCCCTCCCAAAATGACACAACACATGCAGCAAATTAATGCGCTTCACTTCctgttgacctttgaccctccACTTCCTGCCGCCTCCCCgaaaagcaggaaaaaaataacagagaGCCAGACGGAGGCGGGAAGGAGCAGAAAGCCCCGCCCCTTTCTGGTCTCTCGCTCCTTGGCTCTCTCTCACTAGTAAAGTTAGTTAGCAGTCCTGTGCCACGTCAAGCCTGCGAGGCGCTGAGAGACGGGAGAGGTCTCGGCCGAGGCAGGCGTGTGATTTATTCAGGAACACGGAGCCACGGGAAAGAGCCGTCCGGGTCCTGCGGATGCGAGCTGGGAAAACCGGCAGACGCCTGGACTCCtagaggatgaagaggaggatgaggggCAGTATCTTCATCTTTTAGCGAGGGATGTGGAGTCTGATGAAGTGATGCGACGGGAATCACGCAGAAGAACCAGAAAGAGTCGGATCTTCAGCCGTGAAGGAGATTGTTTCAGAGTGTGCAGCAGAGTTTTAGGGAATTTCTGTGTGACACATGAAACCGCAGCGAGCGCATCATCACTCTCcacaggaaacaggaagtttCATCGGTGACACGAGCCCGTCCCGCCTGCCCAGTGTTCAGACTACCTGTTCAGGAAGTAGTGTTTGTACAGTAGTCTGCACATTGGTTAGGCTGGACGGGGATGCTCGAGACGGAGCGTCGCCATGACGACAGCCAGACACATCGCCATGACGACGAGAGGAGGAGGTGAAGTGACTTCATGAAACGCGATCACGCGATGTCAAAGAACGAATGAAATactaaataaagtataaaatgagACTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60290 False 431 lncRNA 0.55 2 30708870 30709891
XR_006251069.1 True 1315 lncRNA 0.52 2 30708773 30710678

Neighbor

gene id symbol gene type direction distance location
ciz1a ciz1a,LOC107687257,LOC107571633,LOC107740230,LOC107689607 coding downstream 36677 30660119 ~ 30672096 (-)
surf2 surf2,LOC107740795,LOC107581206,LOC107743090 coding downstream 52816 30653163 ~ 30655957 (-)
surf4 surf4,LOC107740232,LOC107689610,LOC105890423,LOC103376134 coding downstream 56463 30646286 ~ 30652310 (-)
ass1 ass1,LOC107740768,LOC107687233,LOC107689608 coding downstream 64026 30622204 ~ 30644747 (-)
LOC122344972 NA coding downstream 128445 30576288 ~ 30580328 (-)
golga2 golga2,LOC107658391 coding upstream 23426 30734104 ~ 30754940 (-)
LOC122344907 NA coding upstream 54953 30765631 ~ 30769907 (-)
rabepk rabepk,LOC107743065,LOC107579283 coding upstream 120511 30831189 ~ 30835734 (-)
LOC122344688 LOC107743064,LOC107698017,LOC107734413 coding upstream 210139 30920817 ~ 30941882 (-)
cux2a NA coding upstream 231836 30942514 ~ 30951488 (-)
G40701 NA non-coding downstream 118133 30590197 ~ 30590640 (-)
G40698 NA non-coding downstream 138673 30567251 ~ 30570100 (-)
G40672 NA non-coding downstream 142617 30565684 ~ 30566156 (-)
G40670 ythdc2 non-coding downstream 144396 30564117 ~ 30564377 (-)
G40684 NA non-coding downstream 190318 30516065 ~ 30518455 (-)
G40708 dnm1,LOC107568151,LOC107658356 non-coding upstream 9514 30720192 ~ 30725226 (-)
G40739 NA non-coding upstream 60036 30770714 ~ 30772024 (-)
G40751 hspa5,LOC107687227,LOC107567952 non-coding upstream 110447 30821125 ~ 30846878 (-)
G40762 NA non-coding upstream 155565 30866243 ~ 30919600 (-)
G40760 LOC108429729,LOC107563441 non-coding upstream 210173 30920851 ~ 30925197 (-)
fubp3 fubp3,LOC107689604,LOC107687236,LOC106566971 other downstream 95632 30590843 ~ 30613141 (-)
rnf170 rnf170,LOC107721034,LOC107687247 other downstream 615197 30087966 ~ 30093576 (-)
LOC122344966 LOC107749532,LOC107566852,LOC107742171,LOC107565644,LOC107690083 other downstream 780098 29924702 ~ 29928675 (-)
eng LOC107562335,LOC107704777,LOC107741503 other downstream 1053712 29614719 ~ 29655061 (-)
G40182 brinp1,LOC107715673,LOC107674904 other downstream 1218569 29460585 ~ 29490204 (-)
G40713 lzts3,LOC107567954,LOC107687254,LOC107574519,LOC795227,LOC107665914 other upstream 78955 30789633 ~ 30792719 (-)
G40752 hspa5,LOC107686379,LOC107743071,LOC107687227,LOC107567952,LOC107734417,LOC107734415,LOC107686377 other upstream 107054 30817732 ~ 30826358 (-)
LOC122344987 LOC107591496,LOC107663763,LOC107725109,LOC107734348,LOC107563429,LOC107654309 other upstream 620671 31331349 ~ 31350449 (-)
apooa apoo other upstream 991775 31702453 ~ 31711737 (-)
G41035 LOC107734367,LOC107665727,LOC107725151,LOC107591476,LOC107654325,LOC563292 other upstream 1010592 31721270 ~ 31722906 (-)

Expression


Co-expression Network