arrdc1a (LOC107566126,LOC107587470,LOC107690693,LOC107757967,LOC107709697)


Basic Information

Item Value
gene id arrdc1a
gene name LOC107566126,LOC107587470,LOC107690693,LOC107757967,LOC107709697
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 8705207 ~ 8712776 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238171.1
ACAGGTAAAGCGTTTCCTTTCCTTGTGGATCAGTTTCGCTCGCCACCTGTTCACGGTGGATAAAGAGGAGAATGGGGAAGATTCAGgaatttgaaataacttttaatagcAACAAAACAGTTTATAGCCCAGGCGAATCCCTCACCGGAACTCTGAAAATCTCAATTGCCCAGCCAATACAATGTAAAGCCATCAAAGTGAACTGCCAGGGCTTCTGTGGAGTGACCAGCAAATCGAATGACACTGATTGGACAGAGGAGGAGCAGTACTTCAGCAGCTCGGTCTCAATAGCAGATAAAGGCACTCTGAAAGATGGCGAGCACACTTTTCCCTTCAAGTTTCTCTTGCCAGCTGCTGCACCTACATCATTTGAAGGGCCTTATGGAAGGATTATATACAGAGTTCGGGCTTTCATAGACACGCCTCGTTTCGCAAAAGACTACAAGATAGAGAAGCCCTTCTCTATGAAGAACACAGTCAACCTGAATGAAATACCTGGTATTCAGGATCCTAGCTCTTCTTCTGTAACCAAGAATTTCTCATACATGCTTGTGAAAAATGGGACAGTGGTGCTGAAAGCTAAAAGTGACATGCGAGGGTATATCGCTGGACAGATCATTAAAGTGTTCGCTGAGATTGAAAACAAATCTGACAAGTCAACAGGCCATGTGGTTGCCAGTCTAATGCAGAAAGTTACATATAATACCAAAAAGCCGACATATGACTTGCGGACAGTAGCGGAGGTAGAAGGACCTGGGATTAAAGGTGGACAAAAAAACGAATGGAAAGAGCAGATAATTGTGCCTTCTCTTCATCTGTCCACCCTGACTGATGGAAACCTCATTCAGATCTGCTACTACATTCAGGTCTATTTGAAGTACCCAGAGGCATCATTAACTCTGCCCATTTACATTGGAAGCACAGCATTGGATCCAGCTCGGCCTTCCTCCTCCCGGCAGGTTCCACCCATGCCAGCCCCACGTAATAACCCCACCTCTGCTCCTACCCCTGACCCTtctcctgctgctgctcctgctgctgctgctgctgctcctgctGCTCCGGCTGAATCTGCCCCACCCAGCCTGCCACCACGTACACCCCCAAAACCTGCACCCAAACCCAGGCCTCGCAGCACCTACGCGTCCCCCAGTGCGCCTCCCGCTGATCTGTACCCAGAACTCCCAGGTGTGGCTAACTACAGTGGGGAAATGGCAAAGAGTACACAGCATGAATCTGGTTCCCAAGTTCCCGTGTCTCCCAATGCATTCAGCTATGCTCCTGGACTCAGCTTCAGGCAGAAACAGAGCTCCAACGGCCCATCAGCACCCTCCGCCACCGCCCCTCAAGAGAGGAATGCGACGTCTTCTTCAGCCAGCTTGCCTCCAAACTATAGGAGTTCACCATATCCACATGAAGCTCCACCTTCTTATGAAGATAGTTGCAATATATAAGATGTATCCCAACCATATGAAGAAGGCATGGaaacaaaatattcataacaCTCATGTgactttataataaatgcagacCTCATGCACTTTTGAACCAAATATGtagatgtaaaaatgtgttcataCAATGTCTGTGCTCTGAAGAATGTGACATTTAACCTAAGAGGTCAGCTGACACAATAACTCAGATTGACAAATTGACAGCTATTATGCCAAATAGTTGGAAACAATTActtctgctttttcatttttgtcatgCAGATGATAAAATAGATCTGCCTCTTGCACAGATATTTTACCACTTGTTTTAGGCGTTTCATCACGGAAGACTATTAAGTACTCTTATTATTAGACTGTCTGTGGTTTTGTACATTTGTGGATGCAATCGCAAATCTGCACaacaaattacactttttttttttctttttttctttttttaattagcatgttcaagctttgtttttatgttcCTGATAAGCAAAGGAAGAATCCAGTTCGATTGAAATTGTAACTTTATACTATGTGTGGAATACACAGGTCCTCAAATCAATATACAAAACTACTACATGTTTTGTGgtatttaatgattcatttctaACTTTAATATCTATACCTTTGTTAGTATTGCACActacttttttgtatttgaacagtgatttacatttatatgtaaaaaacatattaataaaaaaacctgt

Function

NR:

description
PREDICTED: arrestin domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238171.1 True 2152 mRNA 0.43 8 8705207 8712776

Neighbor

gene id symbol gene type direction distance location
LOC122344932 LOC107709690,LOC107566118,LOC107681226 coding upstream 977 8702286 ~ 8704230 (+)
LOC122345932 LOC107566117,LOC107709682 coding upstream 3179 8699721 ~ 8702028 (+)
nelfb nelfb,LOC107566125,LOC107709698,LOC107690668,LOC107757973,LOC107681244,LOC107587325 coding upstream 8879 8689817 ~ 8696328 (+)
LOC122344920 entpd2a.2,LOC107709699,LOC107597885,LOC107757974,LOC107681245,LOC107709683 coding upstream 15589 8685958 ~ 8689618 (+)
LOC122345092 LOC107597885,LOC107681245,LOC107757974,LOC107690669,LOC107587326 coding upstream 19984 8677501 ~ 8685223 (+)
ehmt1a ehmt1a,LOC107709696,LOC107566127,LOC107681217,LOC107757960,LOC107690686 coding downstream 1076 8713852 ~ 8724306 (+)
cacna1ba cacna1ba,LOC107690670,LOC107757972,LOC107681248 coding downstream 12414 8725190 ~ 8816007 (+)
noxa1 LOC107709691,LOC107560237,LOC107681242,LOC107690672,LOC107587322 coding downstream 165494 8878270 ~ 8885864 (+)
whrnb dfnb31b,LOC107681240,LOC107560234,LOC107690673,LOC107715750,LOC107709820 coding downstream 174206 8886982 ~ 8938072 (+)
niban2b fam129bb,LOC107709838,LOC107560233,LOC107681249,LOC107715759,LOC107690674,LOC107587422 coding downstream 237608 8950384 ~ 8972068 (+)
G34449 NA non-coding upstream 62526 8642191 ~ 8642681 (+)
G34418 NA non-coding upstream 139711 8564645 ~ 8565496 (+)
G34409 NA non-coding upstream 165489 8532539 ~ 8539718 (+)
G34398 NA non-coding upstream 231862 8472435 ~ 8473345 (+)
G34387 NA non-coding upstream 244968 8456788 ~ 8460239 (+)
G34466 NA non-coding downstream 150070 8862846 ~ 8864201 (+)
G34470 NA non-coding downstream 161319 8874095 ~ 8874695 (+)
G34472 NA non-coding downstream 225489 8938265 ~ 8939370 (+)
G34480 LOC107560223,LOC107711009,LOC107681213 non-coding downstream 281120 8993896 ~ 9001220 (+)
G34689 NA non-coding downstream 534134 9246910 ~ 9248013 (+)
snx19a snx19a,LOC107597619,LOC107681657 other upstream 399761 8289720 ~ 8305446 (+)
spns3 spns3,LOC107597443,LOC107712368,LOC107664514,LOC107677447,LOC107722774,LOC107587440 other upstream 694608 8001578 ~ 8010599 (+)
p2rx1 p2rx1,LOC107598068,LOC107712377,LOC107664512,LOC107587372 other upstream 907239 7754074 ~ 7797968 (+)
dpm2 dpm2,LOC107664400,LOC107712384,LOC107681851,LOC107598396,LOC107587395 other upstream 1030571 7672827 ~ 7674636 (+)
tmem119b LOC107681861,LOC107597286,LOC107587378,LOC107735096 other upstream 1107687 7592963 ~ 7597520 (+)
man1b1b man1b1b,man1b1,LOC107709694,LOC107681241,LOC107560236,LOC107757969,LOC107690671,LOC107587425 other downstream 151426 8864202 ~ 8871518 (+)
si:ch211-102c2.4 NA other downstream 1083605 9796381 ~ 9799358 (+)
fam219ab fam219ab,LOC107744421,LOC107595023,LOC107673386,LOC107752501,LOC107672754,LOC107592322,LOC107673387,LOC107595025,LOC107744422,LOC107592323 other downstream 1351441 10064217 ~ 10139733 (+)
osbp2b si:ch211-106a19.1,LOC107687692,LOC107744438,LOC107726355,LOC107672777,LOC107592367 other downstream 2004755 10717531 ~ 10736059 (+)
senp3a senp3a,LOC107744451,LOC107687680,LOC107599939,LOC107672741,LOC107592295,LOC107726393 other downstream 2214047 10926823 ~ 10933753 (+)

Expression


Co-expression Network