nelfb (nelfb,LOC107566125,LOC107709698,LOC107690668,LOC107757973,LOC107681244,LOC107587325)


Basic Information

Item Value
gene id nelfb
gene name nelfb,LOC107566125,LOC107709698,LOC107690668,LOC107757973,LOC107681244,LOC107587325
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 8689817 ~ 8696328 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238188.1
GTTGCACAGCTAGGAAGTCTGCGAATACGGATAACGGAACAATGCAAATCTAGCCCacatttgttgtgtttgtgctgtCAGCGCATTGCATTTCGTTTTGTTTTGATGCGGTTAAAAAGTGACAGCCAAAATGTTCGCAGGTTTACCGGAGCTGGGAATATCCAATGGGGAAGATCTGAAAGAAACTCTCACTAACTGTACAGAACCCCTAAAAGCCATCGACCAGTTTCAGATGGAAAATGGCATATTGTTGCCAACCCTACAGTCTGCATTGCCTTTCCTGGACCTTCACGGGACTCCACGGCTAGAGTTTCATCAGTCAGTCTTTGATGAACTTCGAGAAAAGCTGATGGAGCGTGTTGCCACAATTGCAGAGGGCAAGGAAGACGACAGatacacaaagCTGGAAGAACTTCTTGAAAAAAGCTTCCCGTTGGTGAAGATGCCATCCATACAGCCTATTGTCATGCAAGTGCTGAAACATCTGCCAAAGGTACCGGAAAAGAAGCTGAAGCAGGTGATGGCTGATAAAGAGCTGTACAAAGTCTGCGCTGTGGAGGTGAAACGGCAGATTTGGCAAGACAATCAGGCTCTTTTCGGGGATGAGGTGTCTCCTCTACTGAAACAGTATATTGTGGAGAAGGAGGCGGCTCTTTTCAGCAATGACCTCTCCATCCTTCACAACTTTTTCAGTCCTTCACCCAAAACACGACGACAGGGGGaggtGGTGTTGAAGCTGACTCAGATGATTGGGAAGAATGTGAAGCTCTATGACATGGTACTACAGTTCCTGCGGACGCTGTTCCTGCGCACGCGTAACGTTCACTACTGCACCCTGCGAGCTGAGCTGCTCATGTCCCTCCATGACCTCGACATCAGCGAGATCTGTTCAGTTGACCCCTGTCACAAGTTTTCCTGGTGTTTGGATGCCTGCATCAGGGAAAAGTTTGTGGATGCTAAACGGGCCCGAGAGCTGCAAGGTTTCCTGGATGGGGTGAAGAAAGGGCAGGAACAAGTATTAGGTGACCTGTCTATGATCCTCTGTGACCCATTTGCCTGTAACACACTAGTGTTGAGCACCGTGAGGAACCTTCAGGAGCTGTTGAGCCAGGACGCCTTACCCAGAGACAGCCCCGACCTTCTCCTTCTCCTGCGGATGCTGTCTCTCGGCCAGGGAGCCTGGGATATGATTGACAGCCAGGTTTTTAAAGAGCCACGAATGGATTTGGAGGTGGTAACCCGCTTCCTGCCTGCCATGATGTCAATAGTGGTGGATGACTACACTTTCACTGTGGAGCAGAAACTGCCGAGTGAGGAGAAAACCTCTCTGACGTACCCCACTGCGCTGCCTGACACCTTCTCAAGGTATATACAGGACAACAGGGTGGCGTGTGAGATCGGTCTTTATTATGTGCTTCATATCGCCAAGCAGAGgaataaaaatgctttacagCGTCTTCTGCCTGCGCTGGttgATACCTATAACGACATGGCATTTGGAGACATCTTTCTCCATCTTCTCACTGGTCATCTGACTCTGCTCTCTGATGAATTTGGATCAGAGGAGTTCTGCACTGCAGTCTTTGAGAACTTCCTCCTCACATCTTTCTCTAGTAAGGAGAATGTCCACCGACACTGCCTTCGCTTGCTGAATCATCTCCATCAGAAGGTGTTTGCCTCCTACCTAGAAACATTAATGAAGACACTTGAACCACCAAAACAGAGCAGTGAGTCAGTGAAGGAGCTGTACACCCTGTTGAAGGAGAAGCTCGAAGCTTCTAAGAAAAGCCCCCCGGAGCCAGAGGAAGCCCCTTCTCTGGATCTCAGCCTTCATCCTGTTACTGTCCCCTCCACCCCTTCCACCCCCACAACCCCTCTCTGAGAGACTGGACGCCCCGGCAACAGTAATCATGTTCACACGGGAATAAACAACAAGCCTTATGTCACGAAGACTGACATGAACGTGTGTAAAATCCTACCGTGCTGGttataaatgttgttgtttttcttcttattttcttttataagggtcattttaaaagccttttccatttttcaattttgttgGCTCAgctcttttctcatttatatgCTTCTTTTAAGAAAACCTAGTCTTGTTTCATTGTTGTATGAGCTCAGATGCAGTCTCTTATGTACAGCATTTCATGGTTGAGTATGTTTTGCTTAGGATTGTGCCGGTGACAAGCCctagtgtaaataaaataaatggtaagAAAGTTTACAGTCCTTGA

Function

symbol description
nelfb Acts upstream of or within positive regulation of hematopoietic stem cell differentiation. Predicted to be located in nucleus. Predicted to be part of NELF complex. Orthologous to human NELFB (negative elongation factor complex member B).

NR:

description
negative elongation factor B

GO:

id name namespace
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K15180 COBRA1, NELFB; negative elongation factor B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238188.1 True 2252 mRNA 0.47 13 8689817 8696328

Neighbor

gene id symbol gene type direction distance location
LOC122344920 entpd2a.2,LOC107709699,LOC107597885,LOC107757974,LOC107681245,LOC107709683 coding upstream 199 8685958 ~ 8689618 (+)
LOC122345092 LOC107597885,LOC107681245,LOC107757974,LOC107690669,LOC107587326 coding upstream 4594 8677501 ~ 8685223 (+)
grin1b grin1b,grin1,LOC107597863,LOC107757976,LOC107709703,LOC107681230 coding upstream 16700 8647747 ~ 8673117 (+)
spaca9 spaca9,LOC107598478,LOC107681227 coding upstream 57020 8631391 ~ 8632797 (+)
barhl1a barhl1,barhl1a,LOC107598469,LOC107741447,LOC107677415,LOC107681223,LOC107587471 coding upstream 96285 8589434 ~ 8593532 (+)
LOC122345932 LOC107566117,LOC107709682 coding downstream 3393 8699721 ~ 8702028 (+)
LOC122344932 LOC107709690,LOC107566118,LOC107681226 coding downstream 5958 8702286 ~ 8704230 (+)
arrdc1a LOC107566126,LOC107587470,LOC107690693,LOC107757967,LOC107709697 coding downstream 8879 8705207 ~ 8712776 (+)
ehmt1a ehmt1a,LOC107709696,LOC107566127,LOC107681217,LOC107757960,LOC107690686 coding downstream 17524 8713852 ~ 8724306 (+)
cacna1ba cacna1ba,LOC107690670,LOC107757972,LOC107681248 coding downstream 28862 8725190 ~ 8816007 (+)
G34449 NA non-coding upstream 47136 8642191 ~ 8642681 (+)
G34418 NA non-coding upstream 124321 8564645 ~ 8565496 (+)
G34409 NA non-coding upstream 150099 8532539 ~ 8539718 (+)
G34398 NA non-coding upstream 216472 8472435 ~ 8473345 (+)
G34387 NA non-coding upstream 229578 8456788 ~ 8460239 (+)
G34466 NA non-coding downstream 166518 8862846 ~ 8864201 (+)
G34470 NA non-coding downstream 177767 8874095 ~ 8874695 (+)
G34472 NA non-coding downstream 241937 8938265 ~ 8939370 (+)
G34480 LOC107560223,LOC107711009,LOC107681213 non-coding downstream 297568 8993896 ~ 9001220 (+)
G34689 NA non-coding downstream 550582 9246910 ~ 9248013 (+)
snx19a snx19a,LOC107597619,LOC107681657 other upstream 384371 8289720 ~ 8305446 (+)
spns3 spns3,LOC107597443,LOC107712368,LOC107664514,LOC107677447,LOC107722774,LOC107587440 other upstream 679218 8001578 ~ 8010599 (+)
p2rx1 p2rx1,LOC107598068,LOC107712377,LOC107664512,LOC107587372 other upstream 891849 7754074 ~ 7797968 (+)
dpm2 dpm2,LOC107664400,LOC107712384,LOC107681851,LOC107598396,LOC107587395 other upstream 1015181 7672827 ~ 7674636 (+)
tmem119b LOC107681861,LOC107597286,LOC107587378,LOC107735096 other upstream 1092297 7592963 ~ 7597520 (+)
man1b1b man1b1b,man1b1,LOC107709694,LOC107681241,LOC107560236,LOC107757969,LOC107690671,LOC107587425 other downstream 167874 8864202 ~ 8871518 (+)
si:ch211-102c2.4 NA other downstream 1100053 9796381 ~ 9799358 (+)
fam219ab fam219ab,LOC107744421,LOC107595023,LOC107673386,LOC107752501,LOC107672754,LOC107592322,LOC107673387,LOC107595025,LOC107744422,LOC107592323 other downstream 1367889 10064217 ~ 10139733 (+)
osbp2b si:ch211-106a19.1,LOC107687692,LOC107744438,LOC107726355,LOC107672777,LOC107592367 other downstream 2021203 10717531 ~ 10736059 (+)
senp3a senp3a,LOC107744451,LOC107687680,LOC107599939,LOC107672741,LOC107592295,LOC107726393 other downstream 2230495 10926823 ~ 10933753 (+)

Expression


Co-expression Network