abcb9 (abcb9,LOC107709851,LOC107721545,LOC107656484,LOC107587418)


Basic Information

Item Value
gene id abcb9
gene name abcb9,LOC107709851,LOC107721545,LOC107656484,LOC107587418
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 9324220 ~ 9329844 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238253.1
TATTCTTTTCCCTTCCTGTCACTGCAGCGAGCCGGTAAAGAAGAGGCGATGGATGACTCCTGGAAATTATGGGGCTAAGATAAGTTTTGTAGTCGTGCCGCGAATATTGATTTACGAAGGAAATACGAAGCTGATTCTTAGACGGAAAATGCATTCTGTACTGCCCCACTGAACAAGTCTGTTATAGAGGGTTAAGCCGCGCAGGCCAGCCAACCAACTTGACAGACGCAGTGCATTCACGTAGACTTTGTTTCAGGCGCGCACTTTCTATTACTGCTCCGTACATGTCAGTCCGGTCTGCTGTGTCATTAACATATTTGCTCGCCCTATAGAAATCACGTCCATATAGAATTTTTGCTGCTTACGTTTAGCATTTGCATTTGAGTAGCTTCAAGGCTCTTCAGCGGGTGAATGAAAATGAGGGTTGCCGTGATTGTTAGCGGCAACCTGGTTTTCACTCTGGCGGACGTTGTGGTCACCACGGTCTTGTATGCTCATGGATCAAATCTTGATATATTTTCAGATGAATTAGAGGACTTTGACATACACCGTTCGACTGTGGACTTGTGGGGAACTGTTCTCATACGGGCCAGTCTTCTTTTCGGGGCAACCATCGGGGTGTTCTATAACAGGACTGATGGTCCACAGAGGGTTTCAAACCTGGGGACGCTGGTTTCTCTCGTATGCCTCACCAACATGACTTACGCTCTTGCCAAGTTGTTGATGCTTTCCGAGGAGGGAGCTCTGATGTATGACCCCTGGTTCCTAAGTTTGTTCTCCTGGACTTGTGCATCAGCAGTAGGCATCATGATCTCGTGGAAGCTGCTGTCACAGACTCCCAATTCTGTATCTGAAAGAGAGGATAGTGAGGAGACGGAGAGGCTGGTGGACGGGACAGAGGCTGAGGATGAGTCCAGGAAGAAGAGTAGAAAGGCAAGAAAAGAGCATCCCCGTTCAGGGGCCACAATCAGCCGCCTCTTGTCGTACTGTAAGAAGGACTCTGGTTTACTGGCcattgcttttttctttcttctcctctctgCTGTGTGTGAAGCTTTCATACCTTATTACACGGGGCGAGCAATAGATGGCATAGTTATCCAGAAAAGCATGGATCATTTTGCCAAACCACTGATTACTCTCAGTATTTTGGCTTTGGTCAGctcCATAGCCACTGGGTTTCGTGGAGGTGTCTTTTCTGTCACGTTTGCCAGGTTGAACATTCGACTTAGGAACCTTCTCTTTAGATCACTAATGCATCAGGAGATTGGGTTCTTCGATGCTAATCATACAGGTGACATTACCTCTAGACTTACCTCAGACACTACTCAGGTGAGCGACCTCATCTCTCAAAATGTCAACCTGTTCCTACGCAGCTTTGTGAAAGCTGTGGGCATCTTTATATTCATGTTTGGGATGTCATGGAAGCTGTCTGTAGTCACCATCATGGGTTTCCCATACATAGCTGTGGTCTCCAAGCTGTATGGAGAGTATTACAAGAAATTAACCAAAGAAGTTCAGACAGCACTGGCTCAGGCCAATAAAGTGGCAGAGGAAACGATATCAGCCATGAGAACAGTGCGAAGTTTTGCCAATGAAGATCAGGAGGGAGACTCGTACAACAGCAAACTGCAGGAGATGTTTGTTCTTAATAAGAAACAAGCAGTTGCCTATGCCTGCTTCATGTGGTCCAGCTATATCTCTGAGCTAGCCTTGCAAGTTGCCATCCTGTATTATGGAGGCCACCTAGTGGTGACAAATCAGATGAGCGGAGGGACTCTTATTTCCTTTATCATTTATGAGCTGGAGCTCGGAGAGGCCCTGGAGagtATCTCGTCAGTGTACACAGGTTTGATGCAAGGCGTCGGAGCTGCAGAGAAAGTGTTCGAATACATCGACAGGAAACCTAAACACATCCTTGATGGCCAAGAGGCTCCGGAGACATTTGAAGGGCAGGTGGAATTCAAAAATGTGACGTTTGCATATCCAACACGGCCAGAGATGGATATATTAAAGAATGTTTCATTCAGTCTTCGCCCTGGGCAAGTAACTGCACTGGTAGGGCCCTCTGGTGGTGGAAAAAGCTCATGCGTGTGTTTGTTGGAGAATTTCTATGCCCCTCAGCAAGGCCAGGTGCTAGTGGACGGCCGACCTGTGAACAGCTACCAGCACAAATACTATCACTCTAAGgtAGCACTGGTGAGTCAGGAGCCTGTTCTATTTGCCCGCACTGTTCAGATGAATATTTCCTATGGTGTACCTGAAGCCTCCATGGAGGCAGTCATTAGAGCTGCCATTAATGCCAATGCACATGACTTCATAACAGGCCTCTCCAAAGGCTATGAAGCTgGGGTTGGAGAGAAGGGTGCTCAGCTGTCTGGTGGGCAAAAACAGAGAGTTGCCATCGCTCGGGCTCTTATCAGAAACCCTCGCATTCTCATTTTGGATGAAGCTACAAGTGCATTGGATTCAGAAAGCGAATTCATAGTTCAGCAGGCTCTGAACAACTTGATGCGAGAACACACGGTTTTAGTGATTGCCCACAGACTGAGCACAGTGGAGAGAGCAGATAACATCCTAGTGATCGACAAAGGCTGTGTGGCGGAGCAGGGGCCGCATGCTGAACTCATGGCCAGGGGAGGCCTCTACTGCAAACTGGTGCAGAGGCAGATCTTGGGGACTGACATAGATGCAGATGGTCACAACCCATCTCCAGCCCCACCATGGGAGCTGAAGGAAGGAGATAACGAGAGTGCAGAGGACTGTAGCGACACTGAGTGCGAAGCACGCTACTAAGAAAAACTTTGAAATGTGCTTCATTTGATTGTATGAAAGCCTTAACCCtagatagatatttattttgatgtatttattctAATCTGGGAATATAtcacatattttgcatgtcaAATGGTGCATTACCAGACAGGAGTACTGGGATGAGGAGTAAAGCTTTaagcaataaatatttgatatgctTGATGTACTGTACtgttatttcagaaataaatatattaaataatacagatatataaataaactttattatggaaataaaatgaattgatggactaa

Function

symbol description
abcb9 Predicted to enable ABC-type peptide antigen transporter activity and TAP1 binding activity. Predicted to contribute to MHC class I protein binding activity. Predicted to be involved in antigen processing and presentation of endogenous peptide antigen via MHC class I; peptide transport; and transmembrane transport. Predicted to be located in lysosomal membrane. Predicted to be part of MHC class I peptide loading complex. Predicted to be integral component of membrane. Orthologous to human ABCB9 (ATP binding cassette subfamily B member 9).

NR:

description
ATP-binding cassette sub-family B member 9

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0035672 oligopeptide transmembrane transport biological_process
GO:0001916 positive regulation of T cell mediated cytotoxicity biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0042825 TAP complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0046978 TAP1 binding molecular_function
GO:0046979 TAP2 binding molecular_function
GO:0046980 tapasin binding molecular_function
GO:0042288 MHC class I protein binding molecular_function
GO:0042605 peptide antigen binding molecular_function
GO:0015421 ATPase-coupled oligopeptide transmembrane transporter activity molecular_function

KEGG:

id description
K05656 ABCB9, TAPL; ATP-binding cassette, subfamily B (MDR/TAP), member 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238253.1 True 3075 mRNA 0.46 11 9324220 9329844

Neighbor

gene id symbol gene type direction distance location
zgc:113436 zgc:113436,LOC107656483 coding upstream 682 9319497 ~ 9323538 (+)
slc4a5a slc4a5,LOC107709849,LOC107721547,LOC108434517,LOC107656495 coding upstream 7679 9295196 ~ 9316541 (+)
zgc:110329 zgc:110329,LOC107673367,LOC107709832,LOC107594991,LOC107587313,LOC107721550,LOC107656494,LOC108434515 coding upstream 36692 9279117 ~ 9287528 (+)
zgc:162952 zgc:162952,LOC107681237,LOC107709843,LOC107715755,LOC107690681 coding upstream 200343 9107949 ~ 9123877 (+)
b3galt8 LOC107709844,LOC107681239,LOC107560227,LOC107754785,LOC107587317,LOC107690696 coding upstream 217016 9105500 ~ 9107204 (+)
vps37ba vps37b,LOC107673398,LOC107594993,LOC107709855,LOC107656485,LOC107587312,LOC107721558 coding downstream 489 9330333 ~ 9340363 (+)
ppp3cca ppp3cca,LOC107709853,LOC107673394,LOC107656499,LOC107721549 coding downstream 11621 9341465 ~ 9371922 (+)
tcima zgc:110340,LOC107587466,LOC107594995,LOC107709856,LOC107673427,LOC107656486 coding downstream 70815 9400659 ~ 9401660 (+)
drd7 drd7,LOC107709833,LOC107594998,LOC107673378,LOC107721546,LOC107659284 coding downstream 229769 9559613 ~ 9561632 (+)
htra4 htra4,LOC107750178,LOC107672779,LOC108434275 coding downstream 411307 9741151 ~ 9750443 (+)
G34688 NA non-coding upstream 72430 9248259 ~ 9251790 (+)
G34689 NA non-coding upstream 76207 9246910 ~ 9248013 (+)
G34480 LOC107560223,LOC107711009,LOC107681213 non-coding upstream 323000 8993896 ~ 9001220 (+)
G34472 NA non-coding upstream 384850 8938265 ~ 8939370 (+)
G34470 NA non-coding upstream 449525 8874095 ~ 8874695 (+)
G34725 NA non-coding downstream 31015 9360859 ~ 9433507 (+)
G34747 LOC105896809,LOC106958509,LOC107671222,LOC107690788 non-coding downstream 148761 9478605 ~ 9565907 (+)
G34840 NA non-coding downstream 435292 9765136 ~ 9765347 (+)
G34841 NA non-coding downstream 436126 9765970 ~ 9766349 (+)
G34842 NA non-coding downstream 437450 9767294 ~ 9767821 (+)
man1b1b man1b1b,man1b1,LOC107709694,LOC107681241,LOC107560236,LOC107757969,LOC107690671,LOC107587425 other upstream 452702 8864202 ~ 8871518 (+)
snx19a snx19a,LOC107597619,LOC107681657 other upstream 1018774 8289720 ~ 8305446 (+)
spns3 spns3,LOC107597443,LOC107712368,LOC107664514,LOC107677447,LOC107722774,LOC107587440 other upstream 1313621 8001578 ~ 8010599 (+)
p2rx1 p2rx1,LOC107598068,LOC107712377,LOC107664512,LOC107587372 other upstream 1526252 7754074 ~ 7797968 (+)
dpm2 dpm2,LOC107664400,LOC107712384,LOC107681851,LOC107598396,LOC107587395 other upstream 1649584 7672827 ~ 7674636 (+)
si:ch211-102c2.4 NA other downstream 466537 9796381 ~ 9799358 (+)
fam219ab fam219ab,LOC107744421,LOC107595023,LOC107673386,LOC107752501,LOC107672754,LOC107592322,LOC107673387,LOC107595025,LOC107744422,LOC107592323 other downstream 734373 10064217 ~ 10139733 (+)
osbp2b si:ch211-106a19.1,LOC107687692,LOC107744438,LOC107726355,LOC107672777,LOC107592367 other downstream 1387687 10717531 ~ 10736059 (+)
senp3a senp3a,LOC107744451,LOC107687680,LOC107599939,LOC107672741,LOC107592295,LOC107726393 other downstream 1596979 10926823 ~ 10933753 (+)
map7d2a LOC107687666,LOC107592282,LOC107599951,LOC107754729,LOC107726367,LOC107672739 other downstream 1716635 11046479 ~ 11064446 (+)

Expression


Co-expression Network