LOC122344741 (otpb,LOC107720233,LOC107587559,LOC107699682,LOC107682870)


Basic Information

Item Value
gene id LOC122344741
gene name otpb,LOC107720233,LOC107587559,LOC107699682,LOC107682870
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 17374852 ~ 17377009 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238292.1
ATGTGCCCTTTCagcagaaatGTGTGGTTCCAGAATAGACGCGCGAAATGGAAGAAGCGCAAGAAGACAACCAACGTCTTCCGGGCGCCGGGCACTTTGCTGCCGACACACGGTCTGCCTCAGTTTCCGTCCGCGGCCGCGATGGGCGACAGTCTCTGCTCTTTTCACGCCAACGACACGCGCTGGGCCGCAGCCGGGATGCCCGGAGTCTCACAGCTGCAGATACCGCCCGCGCTGGGCCGACAGCAGGCTATGGCGCAGTCCCTGTCCCAGTGCAGTCTCGGAGCCGGCCCCCCGCCGAACTCCATGGGCCTTTCCGGCGGCTTATCGTCGAACGGTTCCGGTCTCCAGTCGCATCTGTATCAACCCACGTTTCCAGGGATGGTGCCCGCTTCCCTCTCGGGTCCAACGAACGTGAGCGGCTCCCCTCAGCTGTGCAGCTCGCCGGACAGTGATGTGTGGAGAGGGACTAGTATCGCCTCGCTGCGCCGCAAAGCACTTGAGCACACCGTTTCCATGAGTTTCACCTAATTTGAGCACCCGAGACGTCTTTTCTCTCGCCGCAAACCCCAAATATTCCTGAAAAACAGTCACGGAGCACTCAGGATATGAGGTTATAACTGTGAAATTACAAATTGGCAGCCTTACTGGATAATGGGACCCAAACAAACCCCCCCGACAACGCTTATATACGGCAGACGTAGACTCTAGTAATAGTTTTAATGCTTGAAatgtatgtaatttatttatgcgTTGGATTCGGTCACGTTTATTTGGCTTTCAtagttattgattttaataaccgcgagttatttatttctttatttatttacgagTATTTATTTGACTCTTCATTCACGTATGAAGAAATAACCGCAACAGTATTTATTTcgatattcctttttttttttttttttttaactaaactaaatgtaaaaggAGGCGTTATTAAGGACCACATGTGTGCATGTACAGATTGTTTTACGGCACGTACTACACGTTGGAGTGATTTTTCAGGTACATAACCGAACACGTGGGCGTAAGAGCCAGTTTCCAAATAATCCGATTCAGATGCATGTAAAATTTCAACCAGGATCAACAGGAAGTTGTTTACATAAAGCAAAACGAACTtgagtgtttgtgtatataagaaaaaaaaccttgttatCTGCTGGTATGTTTGTGGTATGTTTTAACTTATTGTCTGTGCTTATTACTGGAATAtggtttttgtaaatgtttatctTACCAAATTCAACAGAATTGGGAAGGTTTATGTAAGTgggtgaataaaatcattttaagaatttta

Function

symbol description
otpb Predicted to enable DNA binding activity. Acts upstream of or within forebrain neuron development; hypothalamus development; and mammillary body development. Predicted to be located in nucleus. Is expressed in several structures, including brain; gonad; neural keel; neural plate; and neurons. Orthologous to human OTP (orthopedia homeobox).

NR:

description
PREDICTED: homeobox protein orthopedia B isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0021854 hypothalamus development biological_process
GO:0021884 forebrain neuron development biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238292.1 True 1312 mRNA 0.46 2 17374852 17377009

Neighbor

gene id symbol gene type direction distance location
LOC122345919 camsap1,camsap1a,LOC107705949,LOC107675701,LOC107661566 coding upstream 604 17373273 ~ 17374248 (+)
LOC122345236 sh2d3c,LOC107731039 coding upstream 46438 17319860 ~ 17328414 (+)
LOC122344734 col27a1b,LOC107720245,LOC107672548,LOC107587699,LOC107699687,LOC107731038,LOC107720196,LOC107552608 coding upstream 58583 17260152 ~ 17316269 (+)
LOC122344732 LOC107570126,LOC107742021,LOC107694705,LOC107675326,LOC107715436,LOC107574130 coding upstream 120953 17229394 ~ 17253899 (+)
edil3a edil3a,edil3,LOC107685241,LOC107669516 coding upstream 211962 17035795 ~ 17162890 (+)
rasa1a rasa1,rasa1a,LOC107720192,LOC107553923,LOC107669512,LOC107753180,LOC108443998 coding downstream 177401 17554410 ~ 17586352 (+)
LOC122345176 LOC107720189,LOC107660966 coding downstream 214904 17591913 ~ 17593686 (+)
polr3g polr3g,LOC107669519,LOC107557435,LOC107756241 coding downstream 519065 17896074 ~ 17899622 (+)
adgrv1 adgrv1,LOC107660972,LOC107669515 coding downstream 530399 17907408 ~ 18012794 (+)
nr2f1a nr2f1a,nr2f1,LOC107671052,LOC107567418,LOC107699709 coding downstream 984864 18361873 ~ 18369522 (+)
G37331 LOC107720200,LOC107699749,LOC107756319,LOC107587493,LOC107703272,LOC107567144,LOC108423573 non-coding upstream 17093 17354606 ~ 17357759 (+)
G37333 NA non-coding upstream 21756 17351156 ~ 17353096 (+)
G37330 NA non-coding upstream 23930 17350591 ~ 17350922 (+)
G37308 NA non-coding upstream 484875 16889197 ~ 16889977 (+)
G37291 NA non-coding upstream 547376 16827125 ~ 16827476 (+)
LOC122345748 NA non-coding downstream 216859 17593868 ~ 17614996 (+)
G37433 NA non-coding downstream 514942 17891951 ~ 17893273 (+)
G37449 NA non-coding downstream 642321 18019330 ~ 18019601 (+)
G37475 LOC107720216,LOC107575123,LOC107567414,LOC107756269,LOC107720179,LOC107699689 non-coding downstream 661123 18038132 ~ 18044946 (+)
LOC122345897 NA non-coding downstream 728090 18105099 ~ 18120648 (+)
LOC122344991 camsap1b,LOC107587696,LOC107672541,LOC107552625,LOC107720249,LOC107745551 other upstream 1993 17364849 ~ 17372859 (+)
G37228 ncor2,LOC107742750 other upstream 813111 16486620 ~ 16561741 (+)
G37227 NA other upstream 814120 16474708 ~ 16560732 (+)
LOC122345998 LOC107718355,LOC107676655,LOC107746825,LOC107680877,LOC107553589,LOC107552586 other upstream 979290 16391797 ~ 16395562 (+)
G36640 NA other upstream 2654365 14718532 ~ 14720487 (+)
LOC122345691 NA other downstream 149015 17526024 ~ 17527444 (+)
arsk arsk,LOC107703223,LOC107720292,LOC107756297 other downstream 1465810 18842819 ~ 18847674 (+)
G37626 LOC107720210 other downstream 1561804 18938813 ~ 18940895 (+)
msh3 msh3,LOC107720281 other downstream 1585313 18962322 ~ 19014100 (+)
nrarpb nrarpb,nrarpa,nrarp,LOC108255347,LOC107595556 other downstream 2330279 19707288 ~ 19710070 (+)

Expression


Co-expression Network