shpk (shpk,LOC107680869,LOC107553593,LOC107718345,LOC107736096)


Basic Information

Item Value
gene id shpk
gene name shpk,LOC107680869,LOC107553593,LOC107718345,LOC107736096
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 15728431 ~ 15732835 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238307.1
TAACGAGCGTTTATCAAAGCGAAAAAGACGAAGTTATTATTCAGTCCGAATCATTTTGTGATTCGGTTCAATTTATTCGGTGAGAAGATTCAAAACAAGATCTGCTCGTTCACCACCAGTCAGAGGTCGCTAGATCGAGTCTAACAGAGCAGTTTCCTTTTGGTGCAGTTTGCTTAAATGACACATACTGCATCTTTTTCTCCCACTGCACTAAAGTAGTGATCATGGCGGCATCTCTCAGCTGTTCTGCTGGCTTTGTTCTCGGCATGGATTTGGGCACCACATCAGTTAAAGTGGTGCTGCTGGATGCGCGGTCAAAGACAGTGACAGACAGCAAGAGTTTCCCTACAAACTCTGATATCAGCAGCACTTCAGACGAACATGCTAAAGAGCAGGATCCTTCACTAATAATCTCTGCTCTGGACCAGTGCATGGACGCTTTACCAAAAGACAAGCTGAAAAAAGTCAAGTGCATTGGAGTGTGTGGACAAATGCATGGCGTTGTGTTGTGGAAATCTAAATCAGGCTGTGAACGGCTAAGTGAAGATCATGGAAATATTAGATTCAATCCTGAAGATGTCAGTCAGCTGATCACCTGGCAGGACGGCCGCTGCGGTGCTGACTTCCTGTCTTCCTTACCCAAACCAGATTCACACCTGAGCGTGGCCACTGGCTTTGGTTGTGCCACCATCTTCTGGTACATGAAACACAGGCCGGAGTTCCTGTCAAGTTTCAGTGATGCGGGCACCATCCAAGACTATGTGGTCTCCATGTTGTGTAACCTTGACAAATGTGTCATGACCGGACAAAATGCTGCCAGCTGGGGCTACTTCAACACAAGCACCAACACGTGGAACGCACAAATCCTGAAGGAGGCAGGTTTCCCCGTGCAGCTCTTGCCGGTCGTGGTGGAGTCTGGAGCTGTGGCCGGTCACACATCCTCTGAGTGGTACGGCATCCCTGCTCACACAGCGGTCGGGGCGGCGCTGGGAGACTTCCAGTGTAGTGTCTACTCCTGCATGACTGACAAGGGAGATGCAGTACTGAATATGAGCACTTCAGCGCAGCTGACGTTCACCATGCCTGCAGAGTTCACCGCTCCCAATGCTCCGGACCCCCTCTCTCCTGTTGCTTATTTCCCATACTTGCACGGCTCTTACCTGGCAGTGGCCGCATCTCTTAATGGAGGCAATGTCATGGCCACATTTGTCAGAATGCTGGAATCGTGGATGAAAGAATTAGGATTGGAAATAAATGAGTCCCGAATCTACTCCCAACTAATCCAGTCTGCTCTGGTACAACCTAGCACTGACCTAACCGTGACAGCAGCGCTACTAGGAGAGCGACATGACCCCGCTTCCAGTGCTAGTGTCTCCCAGATCTCACCCTCTAACCTCTCTCTGGGTCATGTGACTCGTGCTGTGTGCAGGGGTGTTGTTGAAAACATGGCCACTATGATGCCCCCTCAGAGCCTGCAGGCCGCTGGAGTGAAGTGTATTATTGGTAGCGGCAGAGCTCTGACATGTAACACGGTTCTGCAACAGGAAGTAGAGAGAGTATTTACATTTCCTGTAGTCTACGGCAAAGATGTTGACTCGGCAGTTGGAGTTGCCATGCTGTTTAATGACCAAACGTAAgatataacattaaaattgaAAGTCAGAAAGATATAACgtttaaaattctgttattactgaccctcatgtcattccaaacctgtgaggcctttgttcttcttcagaacacagattaagatatttttgatgaattctaaGAGCTCTCTCACCCacccatagacagca

Function

symbol description
shpk Predicted to enable sedoheptulokinase activity. Predicted to be involved in cellular response to lipopolysaccharide and phosphorylation. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be active in cytosol. Orthologous to human SHPK (sedoheptulokinase).

NR:

description
sedoheptulokinase isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function

KEGG:

id description
K11214 SHPK; sedoheptulokinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238307.1 True 1802 mRNA 0.48 7 15728431 15732835

Neighbor

gene id symbol gene type direction distance location
p2rx5 LOC107680863,LOC107746824,LOC107552584,LOC107676654,LOC107718329,LOC107553591 coding upstream 2250 15717866 ~ 15726181 (+)
ubb ubb,UBC,LOC107553588 coding upstream 15716 15709979 ~ 15712715 (+)
pigl pigl,LOC107746821,LOC107680910,LOC107552588,LOC107718344,LOC107676669,LOC107575753 coding upstream 23259 15684803 ~ 15705172 (+)
bcl7a LOC107552594,LOC107746817,LOC107680981,LOC107708648,LOC107553587,LOC107676671 coding upstream 160185 15564146 ~ 15568246 (+)
cfap251 LOC107746856,LOC107681387,LOC107577995 coding upstream 164673 15555922 ~ 15563758 (+)
LOC122344749 LOC107680837,LOC107552580,LOC107746822,LOC107680853,LOC107552581,LOC107746861,LOC107718347,LOC107676666 coding downstream 1101 15733936 ~ 15755185 (+)
trpv1 LOC107680853,LOC107552581,LOC107680837,LOC107552580,LOC107746822,LOC107746861,LOC107676666 coding downstream 16132 15748967 ~ 15755185 (+)
eral1 LOC107553595,LOC107676670,LOC107746830,LOC107680814,LOC107718331,LOC107552539 coding downstream 74976 15807811 ~ 15812017 (+)
tbx16l LOC107681481,LOC107746831,LOC107552576,LOC107553570 coding downstream 82442 15815277 ~ 15821734 (+)
rufy3 rufy3,LOC107718333,LOC107676661,LOC107746833,LOC107552574,LOC107680746,LOC107553597 coding downstream 128219 15861054 ~ 15875316 (+)
G36984 NA non-coding upstream 15237 15712977 ~ 15713194 (+)
G36948 NA non-coding upstream 81324 15643295 ~ 15647107 (+)
G36937 LOC107680951,LOC107553567,LOC107746860,LOC107552540,LOC107718342,LOC107676644 non-coding upstream 105138 15621825 ~ 15623293 (+)
G36918 LOC107746818,LOC107680961,LOC107552589 non-coding upstream 128270 15595448 ~ 15600161 (+)
G36926 NA non-coding upstream 144769 15578118 ~ 15583662 (+)
G37023 NA non-coding downstream 80268 15813103 ~ 15814248 (+)
G37024 NA non-coding downstream 82018 15814853 ~ 15815065 (+)
G36993 NA non-coding downstream 89057 15821892 ~ 15823751 (+)
G37038 NA non-coding downstream 126924 15859759 ~ 15860103 (+)
G37047 NA non-coding downstream 185671 15918506 ~ 15919285 (+)
G36640 NA other upstream 1007944 14718532 ~ 14720487 (+)
fgf5 fgf5,LOC107599194,LOC107746784,LOC107663393,LOC107661278,LOC107602014,LOC107744874 other upstream 1075520 14645945 ~ 14652911 (+)
mrpl1 LOC107663378,LOC107746869,LOC107752362,LOC107599195 other upstream 1378440 14347562 ~ 14349991 (+)
LOC122345214 NA other upstream 1390666 14333023 ~ 14337765 (+)
LOC122345142 NA other upstream 1423127 14300043 ~ 14305304 (+)
LOC122345998 LOC107718355,LOC107676655,LOC107746825,LOC107680877,LOC107553589,LOC107552586 other downstream 658962 16391797 ~ 16395562 (+)
G37227 NA other downstream 741873 16474708 ~ 16560732 (+)
G37228 ncor2,LOC107742750 other downstream 753785 16486620 ~ 16561741 (+)
LOC122344991 camsap1b,LOC107587696,LOC107672541,LOC107552625,LOC107720249,LOC107745551 other downstream 1632014 17364849 ~ 17372859 (+)
LOC122345691 NA other downstream 1793189 17526024 ~ 17527444 (+)

Expression


Co-expression Network