trpv1 (LOC107680853,LOC107552581,LOC107680837,LOC107552580,LOC107746822,LOC107746861,LOC107676666)


Basic Information

Item Value
gene id trpv1
gene name LOC107680853,LOC107552581,LOC107680837,LOC107552580,LOC107746822,LOC107746861,LOC107676666
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 15748967 ~ 15755185 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238309.1
CCTTCAACTTCAGCTGTCACAGAGTTTCCATTTGGATCATTTGTAACCCCTTCCTCTTTTAACAGTGTTTAAAACAAGGAGACACAATGTGATCCATTACGACACTCAAGCAGCTTCTACTCTTACTAAAGCAGCTCTTAGTCTTCgtttttaacaaaaatcaatttgacTGGTCAAAGGAAGAAACATTAAGtcaattatcatttttaagcaCAACTGTAAGAACGTCCCATTTGCTTATAACCTTAACATGACTAATTACACATTTCCTAGAGCTTATTTGTCTAATATAGAAACCTAATGTCCTGTATCTGTAAATAATACCACAACAGCTTTAATTTCTGCTGTATGACATCACTATGAGTAAATCAAGAGACAGCAGCCCCACATTCTTCCTGGAGACGGATGACCTGACAGAGGAGGAAAGGTCAAAGGCCAAACAGAAGAAAGGTGCCTCAAAGGACAAGAGACCCATGGACTCTAACTACCTGGATGAGACAGAGCAGCCTGCACAAACTATTAAATTTAACCTACACACAGACAGGGGTATCAGAAAGGTGAAAGAGGAACCAGCTCAGCAGGACAGTGAGAGGTTTACCCTCAAGAGGCTGTTTGATGCCGTGTCCAGTGGCGATGTGTCTAACCTGCAGGGTTTACATCAGTACCTGCGCAAAAACATGAAACGCCTCACAGACTCTCAATATAAGTCCAATGGAAAGACAGCCCTGCTgaaagcacttttaaatttgaaggAAGGCGAGAATGACACTATTGAACATCTGCTGGAAATTGCAGAGAaactgggagatttgaaaaatTTTGTCAATGCTGCCTACACAGACAGTTTCTACAAAGGTCAGACAGCACTCCATGTAGCTATTGAACGGAGAAGTGCAAAATTTGTACAGATGCTGGTTAAGAAAGGGGCTGATGTCCATGCGAAAGCCTGTGGGAAATTTTTTCAGCCCAATCAAGAAACATGCTTCTATTTTGGTGAGCTGCCCTTGTCACTGGCCGCTTGCACTAATCAGCCAGACATTGTGGACTTCCTTATGAACAACCCTTACCAGGCCGTGGATGTCAGGGAGAGGGACTCTCATGGAAACACGGTGCTTCATGCATTAGTATCCATAGCTGATAACAGTCCTGAAAACACAGAGTTTGTCATCGCCATGTATGACCACATCTTAATCAAAGCAGACCAACTTCACCCCAAGATCAAGCTGGAGgattttgaaaataatgaagATCTCAACCCACTCACACTAGCTGCCAAAACAGGAAAACTGGGGCTGTTAAAGCACATCGTGCAGCGGGAGTTAAAGGGGCGCCGCCATCTGTCGCGAAAGATCACGGAGTGGGCCTACGGTCCGGTGTGCTCATCTCTCTATGACCTCGCCTCTCTCGACACCTACGGCAAGAACTCCGCGCTGGAGATAATCGTTTATGGCAGTGAGATTCCTAATCGCCTCGAGATGCTCTGTATTGAGCCATTTAACCAACTAATTGAAGAGAAGTGGGAGAAATTTGCAAAACGGATGTTCATGTTCAACTTCATCGTATATGTTATCTACCTTTTCATCTTAACTGCTGTATCTTATCACCACGAAACAGGGAAGGACTTTAACATCAGCCAGTCAAAGCCTCCATATccttataaaaacaatatcGAAGGCTATCTGCTTCTGACAGGACACATCATAACTACTACTGGAGCACTTTACTTCTTTATTAGAGGGTTAATAGATATGTTAAGGAAGCGTCCAAGATTTCAGTCCCTGGTGATAGATGGATACACCGATCAGCTTTTTTTTCTGCAGGCCGTGCTCTTCCTGGCTTGTGTTCTACTCTACTGCTTTAGTAATGATGAATATGTGGCCTGTCTAGTTTTGAGTCTTGCCTTGAGCTGGGTAAATCTACTCTACTTCTCCAGAGGGTTCAAAAATATGGGAATCTACAGTGTCATGATGCAGAAGATGGTTCTTGGAGAAATTCGCCGATTCATTGTCGTGTACATGGTCTTCCTCATTGGGTTCTCTGCAGCCGTGGTGACTCTCCTTGACGATCATTCCAAAAAGGGGcggtcttttttttctgaggaCTGTAAGAAGCCCCCATTTCAGGGCATATATTTCACCACTCTGGAGTTGTTCAAGTTCACGATTGGCATGGGAGATCTGGAGTTCACCGATCAATATCAAAACATACAGGTCTTCTATGTGCTGCTGATTCTGTATATCGTGATGACTTACATTTTGATGCTGAACATGCTGATCGCTCTGATGAATCAAAGAGTGGATGAGATGTCTGTAGAGAGCGCCAACATCTGGAAACTACAGCGTGCAATCACCACCTTGGATATGGAGTGGATTTTTCCCCGCTGTCTGAGGACAAGGCTGCGCTCCGGGAAAGAAAAGGACTTAGGCGGGTGGCAGGAGCCTGATCAACGCTGGTGCTTCAGTGTGGAGGAAGTCAACTGGAACCAGTGGAACAGAAACCTGGGTGTGATTACTGAGGATCCTGGGAAATGCCTGCCTGTACCTTCCCCAACTAAACTTCAGAGAGAGCCCAACCAGCGCGGACTCCTGCAAACGTTCAGTAAACGTTGGACACAGAGACAACAACACAGAGATGTACAGGAGCTGACTCCTATAGCTGAGACCTCTAGCTCCgtctgatgtttttataatttggAATCTATTTCAGTCCATTTTGCATTAACCTTTCATTATAACTAGTGCAagaataattacatattattgCTGGTTTAAACTTGACTGTGATTAATTATTGAAGAACAAATATTATACACATCAAGGGTCATTCCTTTTATGCATCATATCtttttaactgtattaaaaaatttatatgca

Function

NR:

description
transient receptor potential cation channel subfamily V member 1-like isoform X1

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005216 ion channel activity molecular_function

KEGG:

id description
K05222 TRPV1; transient receptor potential cation channel subfamily V member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238309.1 True 2873 mRNA 0.43 15 15748967 15755185

Neighbor

gene id symbol gene type direction distance location
shpk shpk,LOC107680869,LOC107553593,LOC107718345,LOC107736096 coding upstream 16132 15728431 ~ 15732835 (+)
p2rx5 LOC107680863,LOC107746824,LOC107552584,LOC107676654,LOC107718329,LOC107553591 coding upstream 22786 15717866 ~ 15726181 (+)
ubb ubb,UBC,LOC107553588 coding upstream 36252 15709979 ~ 15712715 (+)
pigl pigl,LOC107746821,LOC107680910,LOC107552588,LOC107718344,LOC107676669,LOC107575753 coding upstream 43795 15684803 ~ 15705172 (+)
bcl7a LOC107552594,LOC107746817,LOC107680981,LOC107708648,LOC107553587,LOC107676671 coding upstream 180721 15564146 ~ 15568246 (+)
eral1 LOC107553595,LOC107676670,LOC107746830,LOC107680814,LOC107718331,LOC107552539 coding downstream 52626 15807811 ~ 15812017 (+)
tbx16l LOC107681481,LOC107746831,LOC107552576,LOC107553570 coding downstream 60092 15815277 ~ 15821734 (+)
rufy3 rufy3,LOC107718333,LOC107676661,LOC107746833,LOC107552574,LOC107680746,LOC107553597 coding downstream 105869 15861054 ~ 15875316 (+)
mob1ba mob1ba,mob1b,LOC107680716,LOC103036920,LOC107553598,LOC107584591 coding downstream 123680 15878865 ~ 15885104 (+)
aqp3a LOC107680708,LOC107746837,LOC107552570,LOC107718337,LOC107676667,LOC107553599 coding downstream 151130 15906315 ~ 15910878 (+)
G36984 NA non-coding upstream 35773 15712977 ~ 15713194 (+)
G36948 NA non-coding upstream 101860 15643295 ~ 15647107 (+)
G36937 LOC107680951,LOC107553567,LOC107746860,LOC107552540,LOC107718342,LOC107676644 non-coding upstream 125674 15621825 ~ 15623293 (+)
G36918 LOC107746818,LOC107680961,LOC107552589 non-coding upstream 148806 15595448 ~ 15600161 (+)
G36926 NA non-coding upstream 165305 15578118 ~ 15583662 (+)
G37023 NA non-coding downstream 57918 15813103 ~ 15814248 (+)
G37024 NA non-coding downstream 59668 15814853 ~ 15815065 (+)
G36993 NA non-coding downstream 66707 15821892 ~ 15823751 (+)
G37038 NA non-coding downstream 104574 15859759 ~ 15860103 (+)
G37047 NA non-coding downstream 163321 15918506 ~ 15919285 (+)
G36640 NA other upstream 1028480 14718532 ~ 14720487 (+)
fgf5 fgf5,LOC107599194,LOC107746784,LOC107663393,LOC107661278,LOC107602014,LOC107744874 other upstream 1096056 14645945 ~ 14652911 (+)
mrpl1 LOC107663378,LOC107746869,LOC107752362,LOC107599195 other upstream 1398976 14347562 ~ 14349991 (+)
LOC122345214 NA other upstream 1411202 14333023 ~ 14337765 (+)
LOC122345142 NA other upstream 1443663 14300043 ~ 14305304 (+)
LOC122345998 LOC107718355,LOC107676655,LOC107746825,LOC107680877,LOC107553589,LOC107552586 other downstream 636612 16391797 ~ 16395562 (+)
G37227 NA other downstream 719523 16474708 ~ 16560732 (+)
G37228 ncor2,LOC107742750 other downstream 731435 16486620 ~ 16561741 (+)
LOC122344991 camsap1b,LOC107587696,LOC107672541,LOC107552625,LOC107720249,LOC107745551 other downstream 1609664 17364849 ~ 17372859 (+)
LOC122345691 NA other downstream 1770839 17526024 ~ 17527444 (+)

Expression


Co-expression Network