gcnt4a (LOC107699693,LOC107720226,LOC107587561,LOC107703224,LOC107555473,LOC107756273)


Basic Information

Item Value
gene id gcnt4a
gene name LOC107699693,LOC107720226,LOC107587561,LOC107703224,LOC107555473,LOC107756273
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 18890017 ~ 18891306 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238315.1
ATGAAAAGAAGATGTGCTGTCTTACACTGGTTAAGATGCAAGTTCTATGTGTTTGTTGTGTCACTGTTTGTCGTGCTGAAGCTGGTGTACATCAAGATCTCAATGGACAACAGTATTTACATCGAGCCCTATATAGGTGCACATAGATCACTCAGAGTACAGCCTCTGAATGTTATTAACTGCACAGCCATTTATGAACTGGAACCGGTGGAAATCGGCAGGTCATTGGAGTTAAGACGCAAAAACATTGTGGAAGTCAACGATGGGAGTATTGTTTCTTTCACTGAAGACTGCAAAAACTACATCGAACAAAGGGGTTATAATGATGTCATTGTAACAGACGAGGAGTGCAGCTTTCCAATCGCATACTCTTTAGTGGTGCACAAGAACAGCGCCATGGTGGAAAGGATTCTTCGAGCCATCTACACACCTCATAATATTTACTGCATTCATTATGACCAAAAGTCCTCAAATACTTTTATTGCAGCCATGAAGAacttggaaaaatgttttccaaaCGTCTTCATAGCGTCTAAAATTGAGTCTGTTCAGTATGCACATGTTTCCAGACTTAATGCTGATCTCAACTGCCTTTCGGACCTTCTCAGTTCAGAGGTCAAATGGAAGTATGTCATCAATTTGTGTGGCCAAGACTTTCCGCTCAAGTCTAATTATGAGCTGGTATCTGAGCTCAAGAAACTGAACGGCGCAAACATGCTCGAATCAAGCAGACCCAgcgaaatgaaaaaaaagcgCTTTCAGTTTCGGTATGAACTGAAAGATGTGTCATATGAATACCATAAAATGCCAGTTAAGACAGACATTGCTAAGGACCCACCGCCACATGACATTGAGATGTTTGTTGGTAGTGCTTACTTTGTCCTGACACGTGATTTTGTGTCATATATTAAGAACAATCAGCTGGCAGTGGATTTTCTGCAATGGACGTCTGACACATATTCTCCTGATGAGCACTTTTGGGCAACGATGGCCAGAGTGCCTGGAGTTCCTGGAGAGATCAGGAGATCTGAGCCTGATGTGACAGATCTGAAGAGCAGGACACGTTTGGTTAAATGGAACTACCTTGAAGGCCATTTGTATCCACAGTGCACCGGCACACACAGGCGCAGTGTCTGCATCTATGGTGCAGCAGAGCTCCGGTGGCTTCTGGAGGACGGCCACTGGTTTGCAAACAAGTTTGATCCCAAAGTTGACCCTGTCATTATTAAATGTCTTGAAGAGAAACTCGAGGAGAAGCAGCATCAACAATGCATGAAAAGAGTATCTTGA

Function

NR:

description
PREDICTED: beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003829 beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity molecular_function

KEGG:

id description
K09663 GCNT4; beta-1,6-N-acetylglucosaminyltransferase 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238315.1 True 1290 mRNA 0.43 1 18890017 18891306

Neighbor

gene id symbol gene type direction distance location
LOC122345996 NA coding upstream 82 18885057 ~ 18889935 (+)
ankrd31 LOC107699692,LOC107587543,LOC107720237 coding upstream 5132 18879039 ~ 18884885 (+)
cert1a col4a3bpa,LOC107720288,LOC107587519,LOC107703248,LOC107555488 coding upstream 22576 18847936 ~ 18867441 (+)
nol6 nol6,LOC107699715,LOC107587545,LOC107579382 coding upstream 47565 18832815 ~ 18842452 (+)
fam81b fam81b,LOC107699714,LOC107703202,LOC107587521 coding upstream 75087 18805984 ~ 18814930 (+)
LOC122345689 NA coding downstream 9205 18900511 ~ 18914080 (+)
pomt1 LOC107720285,LOC107699719,LOC107587516,LOC107756274,LOC107555474,LOC107703250 coding downstream 23377 18914683 ~ 18921515 (+)
ubac1 ubac1,LOC107699722,LOC107587514,LOC107555477,LOC106579794 coding downstream 62071 18953377 ~ 18961721 (+)
rasgrf2b rasgrf2b,rasgrf2,LOC107720279,LOC107756301,LOC107703251,LOC108423655 coding downstream 124005 19015311 ~ 19068269 (+)
ckmt2b ckmt2,ckmt2b,LOC107720280 coding downstream 177599 19068905 ~ 19074630 (+)
G37540 NA non-coding upstream 139962 18678596 ~ 18750055 (+)
G37497 NA non-coding upstream 499951 18373499 ~ 18390066 (+)
G37501 NA non-coding upstream 502015 18386010 ~ 18388002 (+)
G37495 NA non-coding upstream 536552 18350686 ~ 18353465 (+)
G37492 NA non-coding upstream 610224 18279536 ~ 18279793 (+)
G37618 NA non-coding downstream 31996 18923302 ~ 18924676 (+)
G37619 NA non-coding downstream 33904 18925210 ~ 18925433 (+)
G37620 NA non-coding downstream 34131 18925437 ~ 18927002 (+)
G37734 NA non-coding downstream 396710 19288016 ~ 19288328 (+)
G37843 NA non-coding downstream 702764 19594070 ~ 19647075 (+)
arsk arsk,LOC107703223,LOC107720292,LOC107756297 other upstream 42343 18842819 ~ 18847674 (+)
LOC122345691 NA other upstream 1362573 17526024 ~ 17527444 (+)
LOC122344991 camsap1b,LOC107587696,LOC107672541,LOC107552625,LOC107720249,LOC107745551 other upstream 1517158 17364849 ~ 17372859 (+)
G37228 ncor2,LOC107742750 other upstream 2328276 16486620 ~ 16561741 (+)
G37227 NA other upstream 2329285 16474708 ~ 16560732 (+)
G37626 LOC107720210 other downstream 47507 18938813 ~ 18940895 (+)
msh3 msh3,LOC107720281 other downstream 71016 18962322 ~ 19014100 (+)
nrarpb nrarpb,nrarpa,nrarp,LOC108255347,LOC107595556 other downstream 815982 19707288 ~ 19710070 (+)
col27a1b col27a1b,col27a1,LOC107699687,LOC107720196,LOC107552608,LOC107731038,LOC107720245,LOC107672548,LOC107587699 other downstream 1076271 19967577 ~ 20035380 (+)
lix1 lix1,LOC107552634,LOC107699708,LOC107587723,LOC107672536 other downstream 1251977 20143283 ~ 20151686 (+)

Expression


Co-expression Network