lhx6b (si:ch211-236k19.2,LOC107731013,LOC107672524,LOC107580313)


Basic Information

Item Value
gene id lhx6b
gene name si:ch211-236k19.2,LOC107731013,LOC107672524,LOC107580313
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 20112320 ~ 20115838 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238335.1
ATGATAACAGTTCTGAAGGGCTTAGAGGTGAACGGATTAACGTggcatttgaaatgtttgagGTGCTCGGTGTGCGCCGTGTCCTTGAGTCAGCAAAACAGCTGCTTCTTCAGAAACAAAGAGGTTTTCTGTAGAACGGATTATAACAGtaCCTTTGGCATAAAATGCACCCGATGTGGCCTTCAAGTCAGTGCGAATCACTGGGTTCGGAGGGCAGGTAATGACATATATCACCTTGCCTGCTTCGCTTGCTTCTTCTGCAAAAGGCAGCTTTCCACGGGAGAGGAGTTCGGCTTGATGGAGAATCAAGTTCTCTGTCGCCTTCACTACAACATAATGCTTCCAAATCTGCAGCACATGTCAGACAAAGgaaatataatgcatttgaaCGGAGCTTTACCGATACAAAACCTCCCAAAACCACCAAAAAGGCCTCGCACCTCATTCACCTCGGAGCAGCTGCAGATTATGCAAGCCCACTTTATTCAAGACAAGAACCCTGATGCACAGACTCTGCAGGGGCTGGCAGACATGACTGGACTGAGCAGAAGGGTCATACAGGTTTGGTTCCAGAACTGTCGAGCCAGACAGAAGAGGAACCCATTTCATGACAGCCTTCCTCCACAGGACAGATACCAGACATTTGCAATGCCCTTTCTGTCAGATAACCAGTACTTCTCGGCTTCGGATATGCCCGAGACTCACTGAGACTGCCCACTATTTCAGCATCTCTCTcagaagaagaataaaaaggtacaaaactgtCATTATCGAAAGTTTGGGGTAATGTTTAAAGAAATCGATactttcagcaaggatgcattacacCAATAAAGATGTGCCAGTAAACACATTTCTCAAGGGTCATGTGatcatattttgcaatattactgttttcgaTCTTAGAAATGCATAGAGCACAAGACAGTTGataccctaaacttttgaagcataatatcacatttaaaacatttgaaaacttaTCCAAGAATCATCAGTTATGCTTAGATGGTGCTGTATTtgttactatatttatttattatttacttgaaAAGGATTTACAGGAAAGGATTTCGAAAGGTATTTGGTAAGTACCATTTGAAAAGGGTGTCTGTTTAATAATGAACacatctgtatttaaaatacaatacaataaaatactaaaatagtcACTAATTTATCTGGTGCCAATTTGATGTTGAAAGTTGCTCAAAGCAAGATAAAATGAACCGTGAAACACTGCTACTTGAGTAGATATAAGCTTTTTCAATTGTTGTGCTGTCGAGCATGTCTTTCTCATCTTCTGTAATCACTTGCCACAAAAAAAGAATGCCGGCTCGATCTTTATTTTGTGCCTGATTGCTTAAAATTGTGACAGCTTAATgatatttgttttcttgcacTCAAGCAGTGATTGTCAATTATCTGTCAGTTCATCTAATGATCCAATATAATCCAGCAATCAGGGTCCCTTATTCACTTGTGTTCATTGGCATGTAATAATTCTAATGGAAGCTGATGGTCTCCAATTTCTTTCTGTATGTGTTTAATGGCAACCACACTTTATAAAATGCCCAATCAAATAATGACCATTAAGCTATTCATTCGGTGAGCAATTTCACAAGCGGTAACAGTCCCTGAATACTGCATGATGCATTGATTCATTGTGTGTCACCATTTCTTGAAATAGTCTCAAAGTGGTGTATTGATTTGAACACGTTTAAGCTTTACAATAAATTTCAATGGCCAAACACGAACTCTGAAGATCTAAAATGGCTTGTCCTTCCTAATGACGTATGGGTCTTTTCTTTCCTGCACTACACTGCATATTATACAGGCCGAGTTAAACTCTTAAAGCTtactatgtaatatatattttttgcatacaaTACCTTTCAGATATTTGTGGTCAGTAAGATATTTCATGctgaaagtctcttatgctcaccaggGCTGCAGTTATGTGGTTATACAGCAAACCGTAATATTGTGCAGCGTTGATTactgttcattattttaatatgttttaaacagCATTCTTGTGATGTCAAACTTAGCCATTACTCC

Function

NR:

description
PREDICTED: LIM/homeobox protein Lhx6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238335.1 True 2067 mRNA 0.39 6 20112320 20115838

Neighbor

gene id symbol gene type direction distance location
LOC122345861 LOC107552612,LOC107576533,LOC107731014 coding upstream 17054 20079712 ~ 20095266 (+)
inpp5e LOC107720240,LOC107552629,LOC107699774,LOC107672555,LOC107731045,LOC107587653 coding upstream 41106 20063700 ~ 20071214 (+)
tor2a tor2a,LOC107699771,LOC107731016,LOC107552620,LOC107587655,LOC107672551 coding upstream 60773 20048125 ~ 20051547 (+)
sh2d3cb sh2d3c,LOC107731039 coding upstream 64722 20038971 ~ 20047598 (+)
LOC122345916 NA coding upstream 151653 19954455 ~ 19960667 (+)
krt1-c5 krt1-c5,LOC107740828,LOC107699777,LOC107552621,LOC107672537,LOC107731028 coding downstream 1331 20117169 ~ 20124332 (+)
zbtb26 si:ch211-236k19.4,LOC107552622,LOC107740829,LOC107699705,LOC107672535,LOC107731026,LOC107587659 coding downstream 9266 20125104 ~ 20127387 (+)
LOC122345846 LOC107587725,LOC107660331,LOC107672538,LOC103911143 coding downstream 96029 20211867 ~ 20218048 (+)
rxrab rxrab,LOC107660328,LOC107672569,LOC107740802,LOC107731035,LOC107552637,LOC108255946,LOC108423686,LOC103046247 coding downstream 116346 20232184 ~ 20279189 (+)
LOC122345838 fam78aa,LOC107731022,LOC107672534,LOC107740833,LOC107552624,LOC107665027 coding downstream 192684 20308522 ~ 20311450 (+)
G37958 LOC107745529,LOC107672542,LOC107720246,LOC107552607 non-coding upstream 238176 19873242 ~ 19874144 (+)
G37956 NA non-coding upstream 244922 19794443 ~ 19867398 (+)
G37951 NA non-coding upstream 352116 19759711 ~ 19760204 (+)
G37843 NA non-coding upstream 465245 19594070 ~ 19647075 (+)
G37734 NA non-coding upstream 823992 19288016 ~ 19288328 (+)
G38082 NA non-coding downstream 11563 20127401 ~ 20392624 (+)
G38091 LOC107699781,LOC107552636,LOC107587661,LOC107672574 non-coding downstream 55136 20170974 ~ 20552306 (+)
G38107 LOC107740807,LOC107552623,LOC107665026,LOC107731020,LOC107672533 non-coding downstream 187860 20303698 ~ 20684387 (+)
LOC122345857 NA non-coding downstream 204004 20319842 ~ 20320418 (+)
G38112 LOC107552640,LOC107740808,LOC107731062,LOC107665013,LOC107672520,LOC559520,LOC107587663 non-coding downstream 206822 20322660 ~ 20324555 (+)
col27a1b col27a1b,col27a1,LOC107699687,LOC107720196,LOC107552608,LOC107731038,LOC107720245,LOC107672548,LOC107587699 other upstream 76940 19967577 ~ 20035380 (+)
nrarpb nrarpb,nrarpa,nrarp,LOC108255347,LOC107595556 other upstream 402250 19707288 ~ 19710070 (+)
msh3 msh3,LOC107720281 other upstream 1098220 18962322 ~ 19014100 (+)
G37626 LOC107720210 other upstream 1171425 18938813 ~ 18940895 (+)
arsk arsk,LOC107703223,LOC107720292,LOC107756297 other upstream 1264646 18842819 ~ 18847674 (+)
lix1 lix1,LOC107552634,LOC107699708,LOC107587723,LOC107672536 other downstream 27445 20143283 ~ 20151686 (+)
G38092 LOC107699781,LOC107552636,LOC107587661,LOC107672574 other downstream 69197 20185035 ~ 20513916 (+)
LOC122345823 LOC107740804,LOC107665032,LOC108255802,LOC107672563,LOC107731037 other downstream 168779 20284617 ~ 20297222 (+)
LOC122345834 lix1,LOC107587723,LOC107672536,LOC107699708,LOC107552634 other downstream 291930 20407768 ~ 20416507 (+)
G38094 olfm1a,LOC107672574,LOC107587661,LOC107552636 other downstream 442989 20558827 ~ 20562352 (+)

Expression


Co-expression Network