si:dkey-237j10.2 (LOC107672540,LOC107756556,LOC107597242,LOC107748630,LOC107680403)


Basic Information

Item Value
gene id si:dkey-237j10.2
gene name LOC107672540,LOC107756556,LOC107597242,LOC107748630,LOC107680403
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11467720 ~ 11471124 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238441.1
CCTCTGTTGTTACTCAGAGCAGAGGCACCAGATCGGAGAAAACATCTCAGccttagatagatagatagataaactaACTATCCAAAAGTGACACTATACATTGGACATTGCTGGCTATTACTGTCTCTCTTGAAATTTCTGTTTTACAGCCATAGGCCTGGAAAGAATCCTACTATAAAACATTTGgTGGCTATCATCAAAGACTATAGACTATAGAAATACTATCATGCTCGGAGAAGCTTTCCTTTATGTTCTGAACTGCACAGAAGACATCACAAATCATGATagacatgctcacacacactcagccaCCCCCACGACCCATCCTGACCCCTGCACAACGAGCACCGCTGCCAGATCTCCTCTGACATCACGAACTGTGAGAGcTGGCAGGCCCGAACGCCTGGAAAAGCCAGGGCCGTGCCGAGCCTCTGCACCCAGCAACGCCGTGCCCATTCTCAGCTGTAGCAGGGAGGATCACTTGGGGATGATGCTGTATTGCTCCTGGTGCTGTCCCAGCTTCTGCAAGGACTACCCAGACCTCCGGATTGCTGGTGACCGGCTGGAGCACTACAGTCCTCATAACCCAGACCTGATCAACCCACCAGACACTGGGCCACTGCTACAATCTCAGGACCTGAGCTCTATGGAACCCTCTCTGAAAGCAGAGCAATCCACAGAGGCTGTGGCCCAGCAGGACGAGGAGTATCTTGTCATGGAAAGCGTTCAGGGTCCTGGCTGGGAGAGAAGGCTCACCAACTCCATGTTGAATGGCTATCTGGAAGTCCAAATGATGGAGGTGTATTATCAGCACTTGCAAAACATGGCATGCTGTGGATCATCATTGCTGAGCACTGACGTCATGCCGGCACTGGGACCCACCAGCCTGACTTTAGCCAAAGAACAGACAGCCAGCCACCAAGAAGCACTGGATTCTTCATCCAATAATGTTGTGCATTATTTAAGCACTTGTTCAGCTCCAGCCACCTCCCACTTCAGCTCACCTGTGCTGCGAATCTCAGAAGCTGAGTAATCCAcctcatgaacacacacacacacacacacacacacacttctcctgCCCTCATAAAATTTACAATGTTGAGTTCCTGTCATTTGACCAGTAGTTGATAagtagtgatttaaaaaaaaataaacatcatgttttaaaagtatggacatatgatttatttaatatgtattaacatTAGACATAGGGAAAGTCCAACACTTAGtggccaaaaatatatttttattttgtaagaaatCCTGTGTCTTATACTCActatgatgcatttatttgatcaaaaataaaacatggttaaatataatcacaatttaaaattatgaaacaaattaatatatgcattaata

Function

NR:

description
PREDICTED: uncharacterized protein CXorf21 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238441.1 True 1374 mRNA 0.45 3 11467720 11471124

Neighbor

gene id symbol gene type direction distance location
uprt uprt,LOC107733222,LOC107672530,LOC107680369,LOC107748634 coding upstream 64437 11400449 ~ 11403283 (+)
iqcd LOC107733227,LOC107672405,LOC107597236 coding upstream 102780 11362066 ~ 11364940 (+)
plp1b LOC107597234,LOC107680389,LOC107672433,LOC107592271 coding upstream 137414 11324743 ~ 11330306 (+)
nlgn3b nlgn3b,LOC107672382,LOC107680388,LOC107733224,LOC107597232,LOC103045798 coding upstream 144857 11304365 ~ 11322863 (+)
cchcr1 LOC107680404,LOC107732622,LOC107747821,LOC107687693,LOC107592355 coding upstream 208240 11250625 ~ 11259480 (+)
si:ch211-26b3.4 si:ch211-26b3.4,LOC107597246,LOC107756552,LOC107565423,LOC107741180,LOC107680385,LOC107672834 coding downstream 1988 11473112 ~ 11512262 (+)
apool apool,LOC107672608,LOC107756555 coding downstream 43285 11514409 ~ 11518903 (+)
zgc:113208 zgc:113208,LOC107672636,LOC107597249,LOC106567768 coding downstream 133703 11604827 ~ 11609386 (+)
nono LOC107741185,LOC107756548,LOC107680395,LOC107672625,LOC107565420,LOC107597250 coding downstream 138646 11609770 ~ 11614726 (+)
casp22 LOC107672910,LOC107597346,LOC107735460,LOC107734787 coding downstream 144468 11615592 ~ 11619068 (+)
G35316 NA non-coding upstream 2381 11463869 ~ 11465339 (+)
G35322 NA non-coding upstream 25309 11441539 ~ 11442411 (+)
G35311 NA non-coding upstream 53032 11414041 ~ 11414688 (+)
G35309 NA non-coding upstream 61959 11405528 ~ 11405761 (+)
G35304 prps1a,LOC103031347,LOC107733231,LOC107597240,LOC107672505 non-coding upstream 80550 11382670 ~ 11387170 (+)
G35350 NA non-coding downstream 59394 11530518 ~ 11531244 (+)
G35584 NA non-coding downstream 235535 11706659 ~ 11706998 (+)
G35585 NA non-coding downstream 236407 11707531 ~ 11707773 (+)
G35606 NA non-coding downstream 257152 11728276 ~ 11728601 (+)
G35629 NA non-coding downstream 302862 11773986 ~ 11775492 (+)
gria3a gria3a,LOC107597231,LOC107672342,LOC107732609,LOC107680378,LOC107733225,LOC107592272 other upstream 164289 11266642 ~ 11303431 (+)
LOC122346180 LOC107597222,LOC107680408,LOC107732624,LOC107592391,LOC107732598,LOC107687664,LOC107747817,LOC107687696 other upstream 317495 11136223 ~ 11150225 (+)
map7d2a LOC107687666,LOC107592282,LOC107599951,LOC107754729,LOC107726367,LOC107672739 other upstream 403274 11046479 ~ 11064446 (+)
senp3a senp3a,LOC107744451,LOC107687680,LOC107599939,LOC107672741,LOC107592295,LOC107726393 other upstream 533967 10926823 ~ 10933753 (+)
osbp2b si:ch211-106a19.1,LOC107687692,LOC107744438,LOC107726355,LOC107672777,LOC107592367 other upstream 731661 10717531 ~ 10736059 (+)
glra4b glra4b,LOC107741187,LOC107565418,LOC107680382,LOC108442052,LOC108259905 other downstream 167392 11638516 ~ 11652683 (+)
smarca1 smarca1,LOC107597262,LOC107672796,LOC107741199,LOC107663213,LOC103034185,LOC105028962,LOC105893234,LOC106603320 other downstream 453104 11924228 ~ 11943110 (+)
G35720 LOC107654642,LOC107597266,LOC107743332,LOC107741203,LOC107557123,LOC107663229 other downstream 778014 12249138 ~ 12255672 (+)
si:ch211-225b11.4 si:ch211-225b11.4,LOC107743340,LOC107597327,LOC107654601,LOC107580265,LOC107735986 other downstream 1042889 12514013 ~ 12528790 (+)
iscu si:ch211-191d15.2,iscu,LOC107597282,LOC104937683 other downstream 1232228 12703352 ~ 12705245 (+)

Expression


Co-expression Network