LOC122344925 (LOC107720221,LOC107699684,LOC107703270,LOC107756316,LOC107577860)


Basic Information

Item Value
gene id LOC122344925
gene name LOC107720221,LOC107699684,LOC107703270,LOC107756316,LOC107577860
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 19521428 ~ 19533070 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238573.1
TGCGCCTGTTTGCAAATTAGCTAGCCAGCAAGTCACGTAGCTTTGGTCAAATCTtgttacacaaaataaatttaacttCAGTTTAAAGCTGGTTTTACTTCCAATTCAACTTGCTGCGAAAGCGAATACCACGCTACAGTTATACAGGATGCTTTCTGGCAGTCAAAAATGAAGATGATGATACCACCTGCAGTCCACCGGAAGGGTTTCGGCGCGCTATCTGTCGGGTCATCTGCAGGCATTGTTGTAGCAGCATGAAGTGCAGCAGGTACATGTCCAGCTGGAAGAGGTTCGAGGTCTGCTGAAGGTCATGACGGCAGAGGCAGATGACCGAATGATGAGTGCAGAACTGGAAAATATCCTGCATATTATACCGAATCACAGCTGCACTCTGAGCACTCAACAGCATTTGACAAACCAGATCGAGCATCTCAGAGGGGAGAATCAGCAACTGAAGGCTGCATTGAGACAGGCAGAGCTCAGACTCAGCATAATGGAAAGAGAGAAGGCCTGTCAGCATGCTGCTCTCTCAGAAAAGATCTGCAATGTTGATCAGCTTACTTTAGAGAAACAGCAGATGACCGCTGAGCTGGGAGTGCGGCGTATGCAGCTTACCCAGCTGAAAGAGGGACAGAAAGCTTTGAAAGAGCTGCTGGAACGAGAGAAGCTGCAACTCAAGACCCAGCTGAGGACTGTGCAGGCCGAGCTGGACCAGGCCAACAGTTACTTGAGAACACTGGAGGGAGCTGACGGGCATGGTCTAAAGATTGCTCTGGGGATGCAGAAACAGATCACTGCTAAGAGGGAGCAGACTGATTTCCTGCGAAGCCGCATTCAGCTGCTGGAGGAGAACATAGAGAAGCTCAAGATGGAGAAGCACCGTCAGGCGTTGCTGGTTATGACGCAGACGCGAGAGCTGCTGTCAGAGAAGAAGAGCAGGAGAAGACTGGAGTCTGAAGTGGAGGCTTTGTGCTCACAAGAGCAAGAGCTCAAAGGCAAAGCTGAGAGACTCAAAGCAGCTTTATACAAGaTGTCTGACAGTTTTGCTGAATGCCAAGAATTTATTCAGAAGCAGGAGCAGGATCTTATGAAACTTAAACTGCAGCATGCATTAGATTTAAAGGAATTGAAAAGCCAGAACTTGCGTAACGTCTCCAGATCTCCAGTCGGCAGCCAGACCCTACAGACTCATCTTCCCCTCACTCAGCATAACATTAATGGCCTAATGGAGATGAGAATCTCTGACCCCATTGTGGAGCTGAAGAGTTCTGTAAGAGAGCTGCGTGGTGGGATTGCTGAAGAGCAAGGACCACACACTACCTTGAGCTTCAGGAGGAGACCTAAAGAAGACCACAAATCTAGACAaCCGACAGAAACTAGAGGTGCCAAAAGTACCAAAAGGTCAATTGGGAGAACAACCAGTTACAGTGAGCCGGGATCCTTCAGAAAGGCTGAACCTAATAAGCACGATATCAACAGCCCTCTATCAGCTGACAATAATGCAGTAAACCTTATGACAGGACGCAGGTCTCCTGTGCATCTCCTCCTCACTTCTGATCTTCCCGCTGACGGAAACTGTTGGCTGAAGATGGAGAGCCCTGTTAACGCTAATCAGATATCTGCCAGCAATCAAGACGATCTCGCAGGAAAGGCATCTCGGAAAATGAAGACCGTAGAAGCTACCGAAGGATGATGGTCAGAATGACACCGTTTTTGTTGTGACTGAGGCTGGCCTTTCTGAAGAAATTTGACGCTCCAATTCTGAGCAGTTGAATATGGAGTCGTCAAAACAGACATATATCACTGTTTGCTTTCTTCATTCTTTACTGCAATATTTGTCAGAGGAATTTTTAATGtagaaactaaaaacatttttataacggCCCCTGTATGTACCAAAACAGTTCGTAACAtgccaataatattaaaataccaaTAAACTGAGGCCTTATTTAATGACAGTGGCATTTCTAACC
>XM_043238574.1
TGCGCCTGTTTGCAAATTAGCTAGCCAGCAAGTCACGTAGCTTTGGTCAAATCTtgttacacaaaataaatttaacttCAGTTTAAAGCTGGTTTTACTTCCAATTCAACTTGCTGCGAAAGCGAATACCACGCTACAGTTATACAGGATGCTTTCTGGCAGTCAAAAATGAAGATGATGATACCACCTGCAGTCCACCGGAAGGGTTTCGGCGCGCTATCTGTCGGGTCATCTGCAGGCATTGTTGTAGCAGCATGAAGTGCAGCAGGTACATGTCCAGCTGGAAGAGGTTCGAGGTCTGCTGAAGGTCATGACGGCAGAGGCAGATGACCGAATGATGAGTGCAGAACTGGAAAATATCCTGCATATTATACCGAATCACAGCTGCACTCTGAGCACTCAACAGCATTTGACAAACCAGATCGAGCATCTCAGAGGGGAGAATCAGCAACTGAAGGCTGCATTGAGACAGGCAGAGCTCAGACTCAGCATAATGGAAAGAGAGAAGGCCTGTCAGCATGCTGCTCTCTCAGAAAAGATCTGCAATGTTGATCAGCTTACTTTAGAGAAACAGCAGATGACCGCTGAGCTGGGAGTGCGGCGTATGCAGCTTACCCAGCTGAAAGAGGGACAGAAAGCTTTGAAAGAGCTGCTGGAACGAGAGAAGCTGCAACTCAAGACCCAGCTGAGGACTGTGCAGGCCGAGCTGGACCAGGCCAACAGTTACTTGAGAACACTGGAGGGAGCTGACGGGCATGGTCTAAAGATTGCTCTGGGGATGCAGAAACAGATCACTGCTAAGAGGGAGCAGACTGATTTCCTGCGAAGCCGCATTCAGCTGCTGGAGGAGAACATAGAGAAGCTCAAGATGGAGAAGCACCGTCAGGCGTTGCTGGTTATGACGCAGACGCGAGAGCTGCTGTCAGAGAAGAAGAGCAGGAGAAGACTGGAGTCTGAAGTGGAGGCTTTGTGCTCACAAGAGCAAGAGCTCAAAGGCAAAGCTGAGAGACTCAAAGCAGCTTTATACAAGGAATTGAAAAGCCAGAACTTGCGTAACGTCTCCAGATCTCCAGTCGGCAGCCAGACCCTACAGACTCATCTTCCCCTCACTCAGCATAACATTAATGGCCTAATGGAGATGAGAATCTCTGACCCCATTGTGGAGCTGAAGAGTTCTGTAAGAGAGCTGCGTGGTGGGATTGCTGAAGAGCAAGGACCACACACTACCTTGAGCTTCAGGAGGAGACCTAAAGAAGACCACAAATCTAGACAaCCGACAGAAACTAGAGGTGCCAAAAGTACCAAAAGGTCAATTGGGAGAACAACCAGTTACAGTGAGCCGGGATCCTTCAGAAAGGCTGAACCTAATAAGCACGATATCAACAGCCCTCTATCAGCTGACAATAATGCAGTAAACCTTATGACAGGACGCAGGTCTCCTGTGCATCTCCTCCTCACTTCTGATCTTCCCGCTGACGGAAACTGTTGGCTGAAGATGGAGAGCCCTGTTAACGCTAATCAGATATCTGCCAGCAATCAAGACGATCTCGCAGGAAAGGCATCTCGGAAAATGAAGACCGTAGAAGCTACCGAAGGATGATGGTCAGAATGACACCGTTTTTGTTGTGACTGAGGCTGGCCTTTCTGAAGAAATTTGACGCTCCAATTCTGAGCAGTTGAATATGGAGTCGTCAAAACAGACATATATCACTGTTTGCTTTCTTCATTCTTTACTGCAATATTTGTCAGAGGAATTTTTAATGtagaaactaaaaacatttttataacggCCCCTGTATGTACCAAAACAGTTCGTAACAtgccaataatattaaaataccaaTAAACTGAGGCCTTATTTAATGACAGTGGCATTTCTAACCA
>XM_043238575.1
TGCGCCTGTTTGCAAATTAGCTAGCCAGCAAGTCACGTAGCTTTGGTCAAATCTtgttacacaaaataaatttaacttCAGTTTAAAGCTGGTTTTACTTCCAATTCAACTTGCTGCGAAAGCGAATACCACGCTACAGTTATACAGGATGCTTTCTGGCAGTCAAAAATGAAGATGATGATACCACCTGCAGTCCACCGGAAGGGTTTCGGCGCGCTATCTGTCGGGTCATCTGCAGGCATTGTTGTAGCAGCATGAAGTGCAGCAGGTACATGTCCAGCTGGAAGAGGTTCGAGGTCTGCTGAAGGTCATGACGGCAGAGGCAGATGACCGAATGATGAGTGCAGAACTGGAAAATATCCTGCATATTATACCGAATCACAGCTGCACTCTGAGCACTCAACAGCATTTGACAAACCAGATCGAGCATCTCAGAGGGGAGAATCAGCAACTGAAGGCTGCATTGAGACAGGCAGAGCTCAGACTCAGCATAATGGAAAGAGAGAAGGCCTGTCAGCATGCTGCTCTCTCAGAAAAGATCTGCAATGTTGATCAGCTTACTTTAGAGAAACAGCAGATGACCGCTGAGCTGGGAGTGCGGCGTATGCAGCTTACCCAGCTGAAAGAGGGACAGAAAGCTTTGAAAGAGCTGCTGGAACGAGAGAAGCTGCAACTCAAGACCCAGCTGAGGACTGTGCAGGCCGAGCTGGACCAGGCCAACAGTTACTTGAGAACACTGGAGGGAGCTGACGGGCATGGTCTAAAGATTGCTCTGGGGATGCAGAAACAGATCACTGCTAAGAGGGAGCAGACTGATTTCCTGCGAAGCCGCATTCAGCTGCTGGAGGAGAACATAGAGAAGCTCAAGATGGAGAAGCACCGTCAGGCGTTGCTGGTTATGACGCAGACGCGAGAGCTGCTGTCAGAGAAGAAGAGCAGGAGAAGACTGGAGTCTGAAGTGGAGGCTTTGTGCTCACAAGAGCAAGAGCTCAAAGGCAAAGCTGAGAGACTCAAAGCAGCTTTATACAAGaTGTCTGACAGTTTTGCTGAATGCCAAGAATTTATTCAGAAGCAGGAGCAGGATCTTATGAAACTTAAACTGCAGCATGCATTAGATTTAAAGGAATTGAAAAGCCAGAACTTGCGTAACGTCTCCAGATCTCCAGTCGGCAGCCAGACCCTACAGACTCATCTTCCCCTCACTCAGCATAACATTAATGGCCTAATGGAGATGAGAATCTCTGACCCCATTGTGGAGCTGAAGAGTTCTGTAAGAGAGCTGCGTGGTGGGATTGCTGAAGAGCAAGGACCACACACTACCTTGAGCTTCAGGAGGAGACCTAAAGAAGACCACAAATCTAGACAaCCGACAGAAACTAGAGGTGCCAAAAGTACCAAAAGGTCAATTGGGAGAACAACCAGTTACAGATAATGCAGTAAACCTTATGACAGGACGCAGGTCTCCTGTGCATCTCCTCCTCACTTCTGATCTTCCCGCTGACGGAAACTGTTGGCTGAAGATGGAGAGCCC

Function

NR:

description
PREDICTED: coiled-coil domain-containing protein 158-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238573.1 True 1976 mRNA 0.47 13 19521428 19533069
XM_043238574.1 False 1884 mRNA 0.47 12 19521428 19533070
XM_043238575.1 False 1531 mRNA 0.48 11 19521428 19532499

Neighbor

gene id symbol gene type direction distance location
apba1a apba1,apba1a,LOC107587500,LOC107720269,LOC107756314,LOC107567151 coding upstream 14701 19458358 ~ 19506727 (+)
ptar1 LOC107699739,LOC107587501,LOC107567149,LOC107703268,LOC107756313 coding upstream 63688 19448258 ~ 19457740 (+)
trnap-ugg_3 NA coding upstream 103259 19418098 ~ 19418169 (+)
slc14a2 slc14a2,LOC107555481,LOC107703230,LOC107756279,LOC108423644,LOC108255524 coding upstream 226467 19289551 ~ 19294961 (+)
setbp1 setbp1,LOC107720273,LOC107587504,LOC107756308,LOC107555500 coding upstream 245279 19224925 ~ 19276149 (+)
scarb2a scarb2,LOC107699748,LOC107567147,LOC107703216,LOC107756261 coding downstream 13658 19546728 ~ 19559349 (+)
LOC122346079 LOC107720263,LOC107756281,LOC107699747,LOC107567145,LOC107703219 coding downstream 45528 19578598 ~ 19582066 (+)
mrps30 mrps30,LOC107699686 coding downstream 64480 19597550 ~ 19599695 (+)
cplx4b cplx4b,LOC107587492,LOC107567130,LOC107672561,LOC108423624,LOC107720257,LOC107699754 coding downstream 72910 19605980 ~ 19608057 (+)
prlrb LOC107720254,LOC107756284,LOC107672558,LOC107567136,LOC107587530 coding downstream 86271 19619341 ~ 19629820 (+)
G37734 NA non-coding upstream 233100 19288016 ~ 19288328 (+)
G37620 NA non-coding upstream 594426 18925437 ~ 18927002 (+)
G37619 NA non-coding upstream 595995 18925210 ~ 18925433 (+)
G37618 NA non-coding upstream 596752 18923302 ~ 18924676 (+)
G37540 NA non-coding upstream 771373 18678596 ~ 18750055 (+)
G37843 NA non-coding downstream 61000 19594070 ~ 19647075 (+)
G37951 NA non-coding downstream 226641 19759711 ~ 19760204 (+)
G37956 NA non-coding downstream 261373 19794443 ~ 19867398 (+)
G37958 LOC107745529,LOC107672542,LOC107720246,LOC107552607 non-coding downstream 340172 19873242 ~ 19874144 (+)
G38082 NA non-coding downstream 594331 20127401 ~ 20392624 (+)
msh3 msh3,LOC107720281 other upstream 507328 18962322 ~ 19014100 (+)
G37626 LOC107720210 other upstream 580533 18938813 ~ 18940895 (+)
arsk arsk,LOC107703223,LOC107720292,LOC107756297 other upstream 673754 18842819 ~ 18847674 (+)
LOC122345691 NA other upstream 1993984 17526024 ~ 17527444 (+)
LOC122344991 camsap1b,LOC107587696,LOC107672541,LOC107552625,LOC107720249,LOC107745551 other upstream 2148569 17364849 ~ 17372859 (+)
nrarpb nrarpb,nrarpa,nrarp,LOC108255347,LOC107595556 other downstream 174218 19707288 ~ 19710070 (+)
col27a1b col27a1b,col27a1,LOC107699687,LOC107720196,LOC107552608,LOC107731038,LOC107720245,LOC107672548,LOC107587699 other downstream 434507 19967577 ~ 20035380 (+)
lix1 lix1,LOC107552634,LOC107699708,LOC107587723,LOC107672536 other downstream 610213 20143283 ~ 20151686 (+)
G38092 LOC107699781,LOC107552636,LOC107587661,LOC107672574 other downstream 651965 20185035 ~ 20513916 (+)
LOC122345823 LOC107740804,LOC107665032,LOC108255802,LOC107672563,LOC107731037 other downstream 751547 20284617 ~ 20297222 (+)

Expression


Co-expression Network