tcnba (tcnl)


Basic Information

Item Value
gene id tcnba
gene name tcnl
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 8156890 ~ 8158237 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238612.1
TTTGGCATGCAGAGAAAACCCAGAATATAAATAGAGTGTGTGGTTGTGAGAGAAATTCAGACACACTGTGCCGACTGCAAGAATGGCTCTGACAGCGATTAGTCTTCTGTGCGTTGCAGCTTTGCTGCCGATCTCAGGGCTGGGACTGCCTGCACACTCAGGCAAGCTGGAACAGGTACCCGTAAGAGTGACTGTCATTAACGAGTTCACTAATGAGCAGATCTCCTACTCCTCTACTGTGATAGAAGAAGGGCTGATGTTTGGTGCATTAAATCAACTGCAGGAGACCAACAACGATTTCAAATTTACATACACTATTCATAAAACCTTCGGCATATACCTGGAAAGTGTGAATGGACTGGCTGGATCTGATAAGGACCAGACATACTGGGAGCTTCTGTCTGAAAAAGACGGAGTTGTAACTCGACTGGAAGTTGGAATTGGCTGCTACCAACCTCAGAGAGATGAGAATATGATCCTGAGGTTCACCACTTGGGccaaaatatagatttttcaaaatctttttttcaaatcattagTTGTATTCAGTGGTTGTGAACGTTAAAGCCACAAATTGGTTCAGTCATCGAATCAATACAGTTATAGAGAGTGAATTAATGAATTCATCACTTCATTGTATTCCCAGTATAATACTTCAATAAACATATCCTGATGAAACCGAAAA

Function

NR:

description
transcobalamin like precursor

GO:

id name namespace
GO:0015889 cobalamin transport biological_process
GO:0009235 cobalamin metabolic process biological_process
GO:0031419 cobalamin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238612.1 True 685 mRNA 0.41 4 8156890 8158237

Neighbor

gene id symbol gene type direction distance location
ift22 ift22,LOC107597505,LOC107712360,LOC107664522,LOC107677430,LOC107722786,LOC107587352 coding upstream 27938 8127663 ~ 8128952 (+)
ftr82 LOC107712362,LOC107664526,LOC107597500,LOC107677429,LOC107587354,LOC107722781 coding upstream 30843 8120189 ~ 8126047 (+)
spns2 spns2,LOC107677434,LOC107597455,LOC107722776,LOC107587355,LOC106602867 coding upstream 66218 8025740 ~ 8090672 (+)
LOC122344894 cyb5d2,LOC107664515,LOC107712371,LOC107597422,LOC107664398 coding upstream 180252 7975083 ~ 7976638 (+)
sh3glb2b sh3glb2b,LOC107748508,LOC107681863,LOC107664415,LOC107597332 coding upstream 453719 7683732 ~ 7703171 (+)
tcnbb NA coding downstream 1670 8159907 ~ 8161393 (+)
c2cd2l LOC107717878,LOC107597552,LOC107722772,LOC107677417,LOC107587343 coding downstream 18065 8176302 ~ 8202258 (+)
LOC122345867 LOC108260105,LOC107656935,LOC107597601,LOC107386469,LOC106516344,LOC107717877,LOC108429707 coding downstream 44468 8202705 ~ 8203384 (+)
arcn1a arcn1a,LOC107717874,LOC107722780,LOC107677440,LOC108429760,LOC108260335,LOC107587342 coding downstream 52756 8210993 ~ 8218525 (+)
phldb1a phldb1a,LOC107717873,LOC107677433 coding downstream 60554 8218791 ~ 8260143 (+)
G34163 NA non-coding upstream 25740 8129105 ~ 8131150 (+)
G34116 NA non-coding upstream 160732 7993152 ~ 7996158 (+)
G34104 NA non-coding upstream 222191 7865167 ~ 7934699 (+)
LOC122345061 NA non-coding upstream 225542 7912092 ~ 7931348 (+)
G34075 LOC107664520,LOC107748505,LOC107597375,LOC107712354,LOC107664410 non-coding upstream 375966 7717973 ~ 7780924 (+)
G34358 NA non-coding downstream 270246 8428483 ~ 8431274 (+)
G34383 NA non-coding downstream 288561 8446798 ~ 8447021 (+)
G34384 NA non-coding downstream 289615 8447852 ~ 8448278 (+)
G34387 NA non-coding downstream 298551 8456788 ~ 8460239 (+)
G34398 NA non-coding downstream 314198 8472435 ~ 8473345 (+)
spns3 spns3,LOC107597443,LOC107712368,LOC107664514,LOC107677447,LOC107722774,LOC107587440 other upstream 146291 8001578 ~ 8010599 (+)
p2rx1 p2rx1,LOC107598068,LOC107712377,LOC107664512,LOC107587372 other upstream 358922 7754074 ~ 7797968 (+)
dpm2 dpm2,LOC107664400,LOC107712384,LOC107681851,LOC107598396,LOC107587395 other upstream 482254 7672827 ~ 7674636 (+)
tmem119b LOC107681861,LOC107597286,LOC107587378,LOC107735096 other upstream 559370 7592963 ~ 7597520 (+)
svopb LOC107723362,LOC107681854,LOC107598053 other upstream 589627 7558940 ~ 7567263 (+)
snx19a snx19a,LOC107597619,LOC107681657 other downstream 131483 8289720 ~ 8305446 (+)
man1b1b man1b1b,man1b1,LOC107709694,LOC107681241,LOC107560236,LOC107757969,LOC107690671,LOC107587425 other downstream 705965 8864202 ~ 8871518 (+)
si:ch211-102c2.4 NA other downstream 1638144 9796381 ~ 9799358 (+)
fam219ab fam219ab,LOC107744421,LOC107595023,LOC107673386,LOC107752501,LOC107672754,LOC107592322,LOC107673387,LOC107595025,LOC107744422,LOC107592323 other downstream 1905980 10064217 ~ 10139733 (+)
osbp2b si:ch211-106a19.1,LOC107687692,LOC107744438,LOC107726355,LOC107672777,LOC107592367 other downstream 2559294 10717531 ~ 10736059 (+)

Expression


Co-expression Network