eral1 (LOC107553595,LOC107676670,LOC107746830,LOC107680814,LOC107718331,LOC107552539)


Basic Information

Item Value
gene id eral1
gene name LOC107553595,LOC107676670,LOC107746830,LOC107680814,LOC107718331,LOC107552539
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 15807811 ~ 15812017 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238748.1
GTCTGTTCGGTTCACTCGCTTTAGCAACATGTCTGCGCTCCGGGCACACGTGTAAACAAACATGGAGAGGAGAATAACCTTGCGCGAGGGTTAACTCGAGTGAAACTTTTTGCAGTTATCCACTCGTGTAGTGAAAACGGGTTTCAGCAATGACCTCGAGGCTGTTCGAGACGCTTCTACGCAGATCTCTGCGAATTTCAACCATCCGCAAACTGACCCCAGAGCGCGCGCCGTCAGGTTGCTCGGTTTTTGGTCCACAGGCAGTAAGAAAATGTCTCTTTCACTGCAGTCCGCCTAGTCTGGTGTCTCCGAGAGCTTTTTTGGACAGACTGCAGAAGGGAAGAGAGGTTTTGTCCGACGAGGGCCTCTGTCTTCATCAGCCTGTCTCTGTTCCATCAGACAGCGGTCATCAAATTTCCTTATTAGTAAAGGATCCTGATCAACCTGAAAATGCCAAAGTTCTTAACGTGGCAATCGTGGGTGCGCCTAATGCAGGGAAATCAACATTGACCAATCAGCTTCTCGGCCGAAAGTTGTTTGCCGTTTCGGAGAAAGTGCACACAACAAGATCACGTGCTGTTGGTGTCCTGACAGAGAATGACACACAAATTaTACTGTTGGATACCCCTGGTCTCACCACAAATGTAAAGGCTAAAAGACACCACCTGGAGGAATCGCTGGTGGTGGATCCTTTTAAGTCAATAAAAGAAGCAGatctagtGGTGGTGCTAGTCGACGTGTCTGATAAATGGACCCGCAGTAAGCTGGACTATGAGCTGCTGAAGTGTCTGGCCCTGAATCCAGATGTCCCTGCCATCCTTGTCCTCAATAAGGTAGATCTACTGAagaacaaaacacttttgctaGACCTCACAGCACAACTAACAGAAGGGTTTGTGAACGGAAAGAAGATCAGGATCCGTGGTGCAGCGAAACCATGTGTGAAATCGGCAACCAAAACCCAGAGCACACGTGCTGAAGAACCTCAGTCAGAGAGCCTGAAGGAAGGGGCTCCTCAGAAGAGACAGGACAAAGACGGGCTGAGCCAAGAAGACTTGAAGGCCCTGGAGAGCCGCAACGGGTGGCCCCTCTTTAAAGATGTATTCATGTTAAGCTCTATTAACAGAGAAGATGTGGAAACATTAAAGATGTACCTATTTCAGGGAGCAAAGCCTGGCCAGTGGCAGTATCACAGCGAAGTGCTGACTGATCAGGGTCCTGAGGAGATGTGCGTCAACACTGTCAGAGAGAAACTTCTACAGTATCTCCCGAAGGAGGTGCCGTACAGTATGAAACAGGAAATCGACATCTGGAAGGAGTCTGAGGATGGGGTTCTCGAGATATCCATCAAACTATATGTACAGAAAGATACTCATATGAAAATGGTTATTGGCTCTGGAGGTCATTTGATTACCAAAATAACCCAGGAAGTTGAAAGTGACCTAATGAACATTTTCTTGCGTGAAGTGCGTTTAAAAATCTCTGCAAAGTTGAAGAAGTGAGTTAAACTGTTGGAATGATGAAGGTCAGAGCCTGGCCCATACAGAGGCATGTGGAAACCTGAAAAGAGTTACGTAAGAGTGAAGAAATGGACATGAACTCAAAATATTATGGGTTCTACCTTCAGAACCCGATAGATCCCCCTCTTTcctgtaaaatgaaatgtaagtaCATCACAGACACATTACATAGGTTTCAATGAGTCTATGATGGATTATATCTCACAAACCTGTGCGACCTACATATATTGCTGCTTTTgagttataaaaatgtttgtataataataaattctgcaTATATAGATGTACTTGTTTGTTCTGAGGCTAAGGTTTATTTTCACTCTTTTACTAGTAGGGAGGGTGTACTAGAGGTTATCTGTGGTGCAGTCGTGCTGTTTAACTGAATGTCTTGCATAATAACATCACACTGGCCTAAAATCACGCCTTACATGTAGGCTGGGCCATAAGAAGACTCAGTGGTCTGTGCAGTTGGGGTGGTGGCAGGTTGCCAGGGTGGAGCCGGGCCTCCTCAACTGTGGCTGTACACGAGATTAACTGCAGCTTTTCGAATTATagactgttttatttattatttgtagcTATGTCTGTAACtctgcttttaataaatatgatcaATAATTCAA

Function

NR:

description
GTPase Era, mitochondrial isoform X1

GO:

id name namespace
GO:0000028 ribosomal small subunit assembly biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005759 mitochondrial matrix cellular_component
GO:0043024 ribosomal small subunit binding molecular_function
GO:0005525 GTP binding molecular_function
GO:0019843 rRNA binding molecular_function

KEGG:

id description
K03595 era, ERAL1; GTPase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238748.1 True 2143 mRNA 0.45 11 15807811 15812017

Neighbor

gene id symbol gene type direction distance location
LOC122344749 LOC107680837,LOC107552580,LOC107746822,LOC107680853,LOC107552581,LOC107746861,LOC107718347,LOC107676666 coding upstream 52626 15733936 ~ 15755185 (+)
trpv1 LOC107680853,LOC107552581,LOC107680837,LOC107552580,LOC107746822,LOC107746861,LOC107676666 coding upstream 52626 15748967 ~ 15755185 (+)
shpk shpk,LOC107680869,LOC107553593,LOC107718345,LOC107736096 coding upstream 74976 15728431 ~ 15732835 (+)
p2rx5 LOC107680863,LOC107746824,LOC107552584,LOC107676654,LOC107718329,LOC107553591 coding upstream 81630 15717866 ~ 15726181 (+)
ubb ubb,UBC,LOC107553588 coding upstream 95096 15709979 ~ 15712715 (+)
tbx16l LOC107681481,LOC107746831,LOC107552576,LOC107553570 coding downstream 3260 15815277 ~ 15821734 (+)
rufy3 rufy3,LOC107718333,LOC107676661,LOC107746833,LOC107552574,LOC107680746,LOC107553597 coding downstream 49037 15861054 ~ 15875316 (+)
mob1ba mob1ba,mob1b,LOC107680716,LOC103036920,LOC107553598,LOC107584591 coding downstream 66848 15878865 ~ 15885104 (+)
aqp3a LOC107680708,LOC107746837,LOC107552570,LOC107718337,LOC107676667,LOC107553599 coding downstream 94298 15906315 ~ 15910878 (+)
wdr54 wdr54,LOC107746838,LOC107552569,LOC107718338,LOC107676672,LOC107680694 coding downstream 109741 15921758 ~ 15927369 (+)
G36984 NA non-coding upstream 94617 15712977 ~ 15713194 (+)
G36948 NA non-coding upstream 160704 15643295 ~ 15647107 (+)
G36937 LOC107680951,LOC107553567,LOC107746860,LOC107552540,LOC107718342,LOC107676644 non-coding upstream 184518 15621825 ~ 15623293 (+)
G36918 LOC107746818,LOC107680961,LOC107552589 non-coding upstream 207650 15595448 ~ 15600161 (+)
G36926 NA non-coding upstream 224149 15578118 ~ 15583662 (+)
G37023 NA non-coding downstream 1086 15813103 ~ 15814248 (+)
G37024 NA non-coding downstream 2836 15814853 ~ 15815065 (+)
G36993 NA non-coding downstream 9875 15821892 ~ 15823751 (+)
G37038 NA non-coding downstream 47742 15859759 ~ 15860103 (+)
G37047 NA non-coding downstream 106489 15918506 ~ 15919285 (+)
G36640 NA other upstream 1087324 14718532 ~ 14720487 (+)
fgf5 fgf5,LOC107599194,LOC107746784,LOC107663393,LOC107661278,LOC107602014,LOC107744874 other upstream 1154900 14645945 ~ 14652911 (+)
mrpl1 LOC107663378,LOC107746869,LOC107752362,LOC107599195 other upstream 1457820 14347562 ~ 14349991 (+)
LOC122345214 NA other upstream 1470046 14333023 ~ 14337765 (+)
LOC122345142 NA other upstream 1502507 14300043 ~ 14305304 (+)
LOC122345998 LOC107718355,LOC107676655,LOC107746825,LOC107680877,LOC107553589,LOC107552586 other downstream 579780 16391797 ~ 16395562 (+)
G37227 NA other downstream 662691 16474708 ~ 16560732 (+)
G37228 ncor2,LOC107742750 other downstream 674603 16486620 ~ 16561741 (+)
LOC122344991 camsap1b,LOC107587696,LOC107672541,LOC107552625,LOC107720249,LOC107745551 other downstream 1552832 17364849 ~ 17372859 (+)
LOC122345691 NA other downstream 1714007 17526024 ~ 17527444 (+)

Expression


Co-expression Network