notch1b (LOC107720248,LOC107567148,LOC107699763,LOC107672539,LOC107745520)


Basic Information

Item Value
gene id notch1b
gene name LOC107720248,LOC107567148,LOC107699763,LOC107672539,LOC107745520
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 19794796 ~ 19832854 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238787.1
CAAGTAAATGAATAGCCAGGGCTACAGCTCGTGAAGTGGTGTGGCGGAAGGAGCCTCTGGATGAGAGCAGGAGAATGAAGCCTTGAATACATGATCTCTCTCATTCACTCGGCTGAGACTGCACGAGCAGCACCGGAGCCCGCGAGCGCAACACACAACTGCTGTTTTTTggatctatttttttttaatacttacGTGATTCGTTTCCTTTTCTTGAACAGACCAATGTTGGATATATGTTAAGCCTGCGTGGGATCCCACAACTATCCATAAGAAGGAATGCATCTTTTCCTCGTGAATCTAATTCTTCTGATATCACTCTTTACTTTGACTCAAGGCCTGGAATGCTCAGAAAAATGCCAAAATGGTGGTACGTGTGAACCTACTGCAGAAGGCAGGGGAGAATGCAAGTGTCCCGATTTGTTTGCCGGCACGGCGTGTCAGTTCCGCAATCCTTGCTTTCAGTCTCCGTGCAGAAATGGCGGCGTGTGTCGCTTGATTACTTCTGCCAATAAGGTTGACTTTGTGTGCAACTGCAGCCTGGGCTACACGGACCGACTGTGTCTCACTCCCACCAATAATGTGTGCCTTAGCTCCCCTTGCCGAAACGGAGGCACGTGTGAACTCACCAGCATCCACAGTTACAAGTGTAAATGCCCACCAGGCTGGTCAGGTAAGAACTGCCATCAGGCTGATCCTTGTGCCTCAAATCCATGTGCCAATGGCGGTAAGTGTAGTCCCTTTGATTCCGACTACATCTGCCACTGCACACCCTTCTTCTCAGGCCAAACCTGTAAACAAGACGTCAACGAGTGTGCCCAGAGTCCCTCTCCTTGCAAGAACGGTGGAGTGTGTGAGAACGAGGTGGGCACGTATCGCTGCAACTGTCCTGCAGAGTACACCGGGAGACATTGCGAGACTCTCTATCAGCCCTGTAACCCTTCACCATGCTACTACGGAGGCACCTGCGTACAGAAGGGAGAGACGAGCTATGAGTGCTCCTGTTTGCCAGgcTTCAGTGGTCAAAACTGTGAAGAGAACATTGATGACTGTCCAGACCATCGTTGCCTTAACGGAGGAACCTGTGTGGATGGAGTGAACACCTACAACTGCCGGTGCAAGCCAGAGTGGACAGGTCAGTTCTGTACCGAAGATGTCAACGAGTGCGACTTGATGCCCAATTCCTGCCAGAATGGTGGTACATGCTTGAACACACAGGGTGGATACAACTGTGTCTGTGTAAACGGGTGGACAGGGGATGACTGCAGTGAAAACATTGATGACTGCGCAGATGCAGCCTGCCACACAGGAGCCACATGTCATGATCGGGTGGCCTCCTTCCTCTGTGAATGCCCTCATGGGCGCACaggTCTGCTGTGTCACCTGGACGACGCTTGCATTAGTAACCCATGTCAGAAAGGCTCCAACTGTGACACCAATCCAGTCAACGGCAAGGCCATATGTACCTGTCCTCTGGGTTACGTTGGCCCAGCCTGTGACCAAGACGTTGACGAATGTTCTCTGGGTGCAAACCCTTGCGAACATGCTGGAAGGTGTATAAACACAAAAGGCTCCTTCCAGTGTAAATGTCTGCAGGGATATGTGGGAGCTCGATGCGAACTGGACATAAACGAATGCATTTCCAACCCTTGCCAGAATGACGCTACTTGTCTGGATCAAATCGGAGGCTTCCATTGCATCTGTATGCCAGGTTACGAGGGAGTCTTCTGTCAGATCAATACTGATGAGTGCGCCAGCATGCCCTGCCTCAACAATGGGAAGTGCATCGACAAGATCAACAACTACCAATGCGAGTGCCCCACAGGATTCTCGGGCAGTCAGTGCCAGTTTGACATCGATGAGTGCGCTAGCACCCCCAGCAAAAATGGGGCCAAGTGTATCGATGGGCCCAACATGTACACCTGCCAGTGCGCTGAAGgATACACCGGGCAGCATTGCGAAACAGATGTAGATGAGTGTCTATCCAACCCGTGTCACTACGGCACATGTAAAGACGGCCTGGCGTCCTTCACCTGCATGTGCCGTGCTGGTTTTACGGGCCGTCTGTGTGAGATCAACATTAATGAGTGTCTCAGTCAGCCGTGCCAAAATGGAGGCACCTGCCAGGACCGTGAGAATGCCTACTTATGCATCTGCCCTAAAGGAACCACAGGTGCTAATTGTGAGATTAACCTAGACGACTGTCAAAGCAATCCCTGTGATTTTGGAAGATGCATTGACAAGATAAATGGTTACGAGTGTGCCTGTGAACCGGGATACACAGGGAAAATGTGTAACATCAACATTGATGAGTGTGCCAACAACCCCTGTCACAATGGTGGAACCTGCGTCGATGGAGTCAATGGCTTTACGTGTCTGTGCAGAGAGGGGTATCACGACACGACCTGCCAGTCACAGCTCAACGAATGCCTTAGCAACCCCTGCATACATGGACACTGTGAAGACAAAGTCAATGGATATAACTGCATTTGTGACTCTGGCTGGAGTGGTGTCAACTGTGACATCAATAACAATGAGTGTGAGTCCAACCCCTGTATGAATGGAGGCACCTGTAAGGACATGACCAGCGGCTACGTCTGCACTTGCCGTGCTGGCTTCAGCGGTCCCAACTGccaaacaaatattaatgaatgcGCCTCCAACCCTTGCCTAAATCAAGGAACCTGTATTGATGACGTGGCTGGATACAAATGCAACTGTTTGCTGCCTTACACCGGTGAGAACTGTGAAACCCTTTTGGCTCCATGTAGCTCTAAACCCTGTAAAAATGGAGGCGTTTGTAAGGAATCCGAAGACTATGAGAGCTTCTCTTGTGTGTGTCCTGAAGGATGGCAAGGCCAAACATGCGAAGTGGATATCAACGAATGTGTGAAAAACCCTTGTCGAAATGACGCCATCTGTCAAAACTCTATCGGCAGCTACAAATGCAGTTGCAAATCTGGCTACACAGGCCGCAACTGTGAGACAGACATTGACGACTGCAAGCCCAACCCTTGCAGTAACGGTGGCTTCTGCAAAGACGCCGTGAATGCCTTCACTTGCACCTGCCTACCAGGTTTCCGGGGGAGCAGATGCGAGGAAGACATTAATGAATGTGACAGTAACCCATGTAAAAATGGCGCGAACTGCACTGATTGTGTGAACAGTTACACCTGTACCTGTCCATCTGGATTCAGTGGGATTCACTGCGAGAACAACACACCTGACTGCACTGAGAGcTCTTGTTTTAATGGCGGCACATGTGTGGATGGCATCAACAGTTTCACTTGCTTGTGCCCGACGGGGTTCACTGGAAACTACTGCCAGCATGACATCAACGAGTGTGACTCCAGACCCTGCCTGAATGGAGGCACTTGTCAGGACAGCTACGGCACATACAAGTGCACCTGCCCTCAGGGATACCATGGCCATAACTGCCAGGAGCTGGTGAACTGGTGTAAGCCGTCTCCCTGTAAGAATGGAGGCATCTGCAGACAGAGCGGCACTAAATACAGCTGCCAGTGTCAGACAGGCTGGACTGGTTTATACTGCGACGTCCCAAGCGTTTCTTGCGAGGTGGCCGCCAAACAGCaagGTGTGGAGGTGGCCCGGCTGTGTCGTAACTCTGGCCAGTGTCTGGATGCTGGAAACACACACTACTGTCACTGTCAGGCCGGATACACTGGCAGCTACTGCGAGGAGCAGGTGGATGAATGCATTCCCAATCCTTGCCAGAACGGAGCAACCTGTACTGACTACCTGGGCGGCTACTCCTGCGAATGCGTGCCAGGTTATCATGGAGTGAACTGCTCTGATGAGATCAATGAGTGTCTGTCTCAGCCCTGCCAGAACGGAGGCACATGCATCGACCTGATCAATACCTACAAATGCTCCTGTCCTCGGGGAACACAAGGTGTGCACTGCGAGATCAACATTGACGACTGCACACCCTTCACCGACCCCGTCACCCAGGAGCCCAAATGCTTTAACCAGGGCCGCTGTGTGGACCGTGTGGGTGGGTACCACTGCATTTGCCTGGCCGGATATGTGGGGGAACGCTGTGAGGGCGATGTCAATGAATGCTTATCGAACCCTTGTGACCCCCGTGGCACACACAGCTGCATCCAGCTCACGAACAACTACCGCTGCGAGTGTCGCACGGGATACACAGGTCAGCGCTGTGACAAAGTGTTTGATGGCTGTAAGGGGAAGCCTTGTCGTAATGGAGGCACCTGCGCTGTGGCTAGTAACACTCCTCATGGCTTCATCTGCAAATGTCCACCGGGTTTTACAGGCTCAACGTGCGAGTATGACGCTCATGCCTGTGGTACTCTCCATTGTAAAAATGGGGGTACATGCGTTTCTGGTCAAAAGAGCCCCAAATGCCTGTGCACCCCTGCCTTCACTGGTCCTGAGTGCCAGTATCCCACTGAGGGTCACTGCACCACCAATCCATGCTACAACGGAGGCACGTGTGAGTACATCTCCGAGGCCCCATACTACCACTGCATCTGTCCCACCGACTTCAATGGCCTCTTCTGCCACATCCTGGACTTCAGCTTCCCAGGTGGCCCTGCTCGAGATATCACACCCGCTCCCAAAGTGACCGTGAGCTGCGAGATAGCAGAGTGTGAGAACAAGAAAAGCAACAAGATCTGTGACGGCGCATGTAATAATTACGCCTGCGACTGGGATGGAGGGGACTGCTCGCTGAACTTCAATGACCCGTGGCAGAACTGTTCGGGCGCGCTGCAGTGCTGGCGCTATTTTAATAACGGGAAGTGTGATGAACAGTGTCACAACGCTGGATGCCTCTATGACGGATTTGACTGCCAGAGACTGGAGGGCCAGTGCAATCCACTCTATGACCAGTATTGCAAAGACCACTATGCAGATGGCCACTGTGACCAGGGCTGCAATAACGCAGAGTGTGAATGGGACGGGCTGGACTGTGCCAGCAACATACCCGAGAAGTTAGCTGCAGGACTCCTAGTTGTGGTGGTCCACATTTTACCCGACCAGCTCCGAAACAACTCCTTTGGATTTCTGCGGGAGCTCAGCCGAGTCCTCCACACCAATGTGGTTTTCCGACACGACAGCAAGGGAGAGGAAATGATCTACCCTTATTACGGCAACGAGCAGGAGCTAAGAAAGCACAACATCAAACGATCACTAGATGGCTGGGACGATGCTTCCAGCAACGTCTTGAGCTCCGTAAAAAGTAGCATTTACAACATAGTGGTGGAAGGAGGGCGAAAACGCAGAGAACTGGACGAGATGCAGATCAAAGGCTCTGTGGTGTATCTGGAGATTGACAACCGCCAATGCTACCAACAAACCTCTGAGTGCTTCCAGAACGCAAACGACGTGGCGGCGTTCCTTGGAGCCCTGGCTTCCAGCGGCAATCTGAATATGCCTTACGTCATCGAGGCCGTCACAAGTAAGATTGACGGGCCGTCGCCTATAGAGCTCTACCCAGTCTACGTGGTTCTGGCAGGATTGGCACTGCTGGCCTTTGTCGCCGTGGGAATGGTCGCGTCCCGTAAACGCCGCCGGGAACACGGTCAGCTATGGTTTCCAGAGGGTTTCAAGACCAGCGAGCCTAgcaagaagaagaggagggAACCGGTCGGTGAAGACTCCGTCGGTCTGAGGCCACTTAAGAACTGTTCAGACATTTCATTAATGGATGACAACCAGAATGAATGGGGAGAAGAGGAAACATCAGACACCAAACGCTTCAGGTCGGAGGAGCAGGCGATGCTTGATTTAGATCATCAGCCAGATCACCGGCAGTGGACGCAGCAGCACTTGGACGCAGCCGATCTACGAATCCCATCCATCGCTCCCACACCCCCTCAGGGCGAGATAGAGAACGATTGCATGGATGTCAATGCCCGAGGACCAGatGGCTTTACTCCTCTCATGATCGCATCTTGTAGTGGAGGAGGGCTAGAAACAGGAAAcagcgaggaagaggaggatgctTCAGCCAACGTCATCAATGACTTCATTTATCAAGGTGCCAACCTTCACAATCAGACAGACCGCACGGGTGAGACGGCCCTACACCTGGCTGCCCGTTATGCCCGCTCAGATGCTGCAAAAAGGCTCCTGGAGGCCAGTGCAGACGCCAACATCCAGGACAATATGGGACGGACTCCATTACACGCTGCCGTGGCTGCAGATGCACAAGGGGTCTTCCAGATTTTGATTCGTAACCGTGCCACGGACCTCGATGCCCGCATGCATGATGGCACTACACCTCTGATACTGGCAGCAAGACTTGCGGTCGAGGGAATGGTGGAGGAACTCATCAACTGCCATGCTGATGTTAATGCCATTGatgattctgGTAAATCAGCACTTCACTGGGCAGCTGCTGTCAACAATGTAGATGCAGCGATGGTATTGCTTAAGAACGGGGCAAATAAAGATATGCAAAACAATAAGGAGGAGACTCCCTTATTCCTGGCTGCAAGAGAAGGAAGTTACGAAACCGCTAAAGTTCTTCTTGAGCATTTCGCCAATCGAGAGATCACGGACCACATGGATCGGCTCCCGAGGGATATTGCTCAGGACAGAATGCATCACGACATCGTGCGGCTCATCGACGAATATAACCTGGTTCGCAGCCCTCCCATGCACAGCGCCCCTCTCTGCACCACACTCTCCCCGCCTCTCTGCTCCCCCAACGCCTTCATGGGTAGCATGAAGCCCTCCGTGCAAAGTAAAAAACCCCGCAAGCCGAGCATAAAAGGCATCGGTTGCAAGGATGGCAAAGATATGAAAGTCAAGAAGAAGAAGGCACAGGATGGAAAGGGACACTTACTAGACAGCTCAGCTGTGCTCTCGCCGGTCGATTCCTTGGAGTCGCCCCACGGGTACATATCTGACGTCGCCTCTCCCCCCCTGATGACGTCCCCCTTTCAGCAGTCGCCCTCCATGTCGCTAAATCACTTACAGGGCATCGCAGACACACACATGGGCGTCAACCATCTGGGAATGGGCAACAAGCAAGACCTGGCCCATATACAGTTTGATCCGTTACCCCCACGTCTCACCCATCTTCCAGTGGCCGGATCTAACGGCTCAAACATCATGAATGGCCAGTGCGAATGGCTCGGGCGGATGCACAATAGCATGGGTCCGCAAAATCAATTCGGAGCCATGAGGAACGCCTCAGGCCAGGCCAGCCTTCACCAGCAAGGCCTGATGACGTCTCTGCACAATAGCCGCCCCGCCACACTCTCTCAGATGATGAACTATCAAAGcctgcagaacacacacctCAGCACGCAGCCGCATTTAATGCAGCAGATTCAGCAGAACATGCAACAGAGACCGCAGCAGACGAACGTCCAGCTGCAGCACCAGAGCTCCAATCCAGCCGGCGGCGTGAGCCAGAACTTACTCGGCGGGGAGTTGGGTGGTCCGGAGCTCCAGCAGAGTGCGGGGAACAGCATGCCCATCCATACCATCATCCCCCAGGAGACCCAGCTGTTGAACCCGACTTCTCTGGGTCCCAGCATGGCGGGAACACAGTTCCTGACACCACCTTCCCAGCACAGTTACACAGCCCCAATGGACGCCAACACCCCCAGCCACCAACTCCAAGTGCCTGATCACCCATTTCTCACGCCGTCTCCAGGTTCACCGGACCAGTGGTCCAGCTCGTCGCCTCACTCAAACATGTCTGACTGGTCGGAGGGCATTTCCAGTCCTCCCACTAGCATGCAGTCACAAATCGGACACATACCGGAgcagttcaaataaaaaaatctaattaaaaatgaaggcACCATAAGCCTGCTCACTGAAGGTCTTTTATATGCCTCTTGTACtaaccatattttttttatttattgatattttgttatttatacaaccatttattttcaaatttgggCACAGGAATTgatcttaaaaataatgaagaagaagaaggtattttttaatgtaatactaATGACCGCAATACACTGTACTCAAATGTACACACTGGGTATTTATTGGTCTTAAAATATGcctgttttttatttcagttttatttggaATTTTCATACAattaattatatcaaatattgtattaatttgtaaaaatgcaaagtTCTCGTACGGGCATTTTAGAGAGCATGTTTTTATACAACAAACTTCAGTGTTAAAGTAGATTTATGTTGTTTGAAACAAGCTGCTTTTCCGTTACTAGAAGATGAATGATTAAATTTGTTCTGTgttatttcttatatttgttaTGATTAGGTTCTCATCTTTTTTATGCTACAAGGTTTATACTACGAATAAGTAGTGGTGTTATAATTGAAAATTTGTATAGTTCAAAGTGatttgctttctctttttttcctttcttgtaTATTAAGTTCCTGCATAAGCAGATTTTTCTAAACGTCCGCTGTGAGTGTGGATGTAAAAGTGAGGATCTGAGCTTCTAACAGAACATACTTGATACGGCCTTGTATAAAACAGGTTGCGGTATCAAGTGCTCTGTATCTTTTTCCTCCAATTTTGTAGAACTGGTCATGTGGCCAAAAGTGTATGGGGTTTTATGGAGGTGTTTCAAATTGAACTGCTCTTTACTGTACTTCAGTTTTGTAACTTTGTTTGAGCCTATGGCTAATGTAAATAGATATATTGTATGCGTTTGTCTTGTAAACAGGATTTTGTTTCAGAAATCTTAAGTGTGCCATggaaatttgaaatattttaatgctacGTAGTTATGTTTTCTATCATAAGCAGAacgtatattttttttctcagtatcaCTGGGGtagatcaaaatacagtataagAAATGTATACACACAAATTATTAGAGGATATGACATTCAGAATAACATAATTAGATGATTTATGACTCACTATTTATTGACTACCAATAGATTTCTACACAATCACAAAATAAGTTAAAAGGTCCCCATAAAGGGACGTGGTGGTGTCATATATATCATTGAAGCCATCAGTACTTCCGAGTTCATCAGATTTGAACAGCACTGAGTATATATATTGTCTGTAAATGTTACCTGCAAATGTGTAGTTTACATGCAGAGTATTTTCTGTCAGTTCTACTGTCTGTACAagtttctttgattaataaaagaTACCGATGGGTATTAAAATTCA

Function

NR:

description
PREDICTED: neurogenic locus notch homolog protein 1-like isoform X3

GO:

id name namespace
GO:0007219 Notch signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0097150 neuronal stem cell population maintenance biological_process
GO:0021654 rhombomere boundary formation biological_process
GO:0001568 blood vessel development biological_process
GO:0048936 peripheral nervous system neuron axonogenesis biological_process
GO:0001946 lymphangiogenesis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K02599 NOTCH1; Notch 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238787.1 True 9144 mRNA 0.49 34 19794796 19832854

Neighbor

gene id symbol gene type direction distance location
adamtsl2 adamtsl2,LOC107699701 coding upstream 35515 19744545 ~ 19759281 (+)
LOC122344990 ttc16,LOC107699760,LOC107720230 coding upstream 61324 19726820 ~ 19733472 (+)
mboat4 LOC107720232,LOC107672543,LOC107567140,LOC107756285 coding upstream 130124 19659663 ~ 19664672 (+)
coq2 coq2,LOC107587489,LOC107699757,LOC107756326,LOC107567138,LOC107672553 coding upstream 145530 19645537 ~ 19649266 (+)
prlrb LOC107720254,LOC107756284,LOC107672558,LOC107567136,LOC107587530 coding upstream 164976 19619341 ~ 19629820 (+)
camsap1b LOC107720249,LOC107552625,LOC107672541 coding downstream 4901 19837755 ~ 19860160 (+)
LOC122346028 LOC107672526 coding downstream 28097 19860951 ~ 19864951 (+)
LOC122345916 NA coding downstream 121601 19954455 ~ 19960667 (+)
sh2d3cb sh2d3c,LOC107731039 coding downstream 206117 20038971 ~ 20047598 (+)
tor2a tor2a,LOC107699771,LOC107731016,LOC107552620,LOC107587655,LOC107672551 coding downstream 215271 20048125 ~ 20051547 (+)
G37951 NA non-coding upstream 34592 19759711 ~ 19760204 (+)
G37843 NA non-coding upstream 147721 19594070 ~ 19647075 (+)
G37734 NA non-coding upstream 506468 19288016 ~ 19288328 (+)
G37620 NA non-coding upstream 867794 18925437 ~ 18927002 (+)
G37619 NA non-coding upstream 869363 18925210 ~ 18925433 (+)
G37958 LOC107745529,LOC107672542,LOC107720246,LOC107552607 non-coding downstream 40388 19873242 ~ 19874144 (+)
G38082 NA non-coding downstream 294547 20127401 ~ 20392624 (+)
G38091 LOC107699781,LOC107552636,LOC107587661,LOC107672574 non-coding downstream 338120 20170974 ~ 20552306 (+)
G38107 LOC107740807,LOC107552623,LOC107665026,LOC107731020,LOC107672533 non-coding downstream 470844 20303698 ~ 20684387 (+)
LOC122345857 NA non-coding downstream 486988 20319842 ~ 20320418 (+)
nrarpb nrarpb,nrarpa,nrarp,LOC108255347,LOC107595556 other upstream 84726 19707288 ~ 19710070 (+)
msh3 msh3,LOC107720281 other upstream 780696 18962322 ~ 19014100 (+)
G37626 LOC107720210 other upstream 853901 18938813 ~ 18940895 (+)
arsk arsk,LOC107703223,LOC107720292,LOC107756297 other upstream 947122 18842819 ~ 18847674 (+)
LOC122345691 NA other upstream 2267352 17526024 ~ 17527444 (+)
col27a1b col27a1b,col27a1,LOC107699687,LOC107720196,LOC107552608,LOC107731038,LOC107720245,LOC107672548,LOC107587699 other downstream 134723 19967577 ~ 20035380 (+)
lix1 lix1,LOC107552634,LOC107699708,LOC107587723,LOC107672536 other downstream 310429 20143283 ~ 20151686 (+)
G38092 LOC107699781,LOC107552636,LOC107587661,LOC107672574 other downstream 352181 20185035 ~ 20513916 (+)
LOC122345823 LOC107740804,LOC107665032,LOC108255802,LOC107672563,LOC107731037 other downstream 451763 20284617 ~ 20297222 (+)
LOC122345834 lix1,LOC107587723,LOC107672536,LOC107699708,LOC107552634 other downstream 574914 20407768 ~ 20416507 (+)

Expression


Co-expression Network