rhobtb4 (rhobtb2a,LOC107552568,LOC107680668,LOC107746840,LOC107676653,LOC107718339,LOC107553600)


Basic Information

Item Value
gene id rhobtb4
gene name rhobtb2a,LOC107552568,LOC107680668,LOC107746840,LOC107676653,LOC107718339,LOC107553600
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 15951062 ~ 15978748 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238861.1
GGCGGAATCAGCTGTAGAAAGAAACAATAACACACCAACGAACGCCCCAAAATGAGAGCTTACCTATAAATGTCAGTAATTCCAGGAAAAAGAGGTATCGTTGAGAGAGCGAGGGATAGATGTAGCACACTTAACGGTTGAGGTTCTTCACTGCATTCTGCAAACTTGTTTCAGGGGATCTCTTTCAGCTCTGCAGGGAAGGCGAGTGTGAAGATGCTGCCTTTGTGTCAGCCGTGACACGCCAGCGAGTTGAACACAAAACAGTCGAGAGTTTTTTCCAGAGACCTATCAGTCATTTAACGGTTTTATTTGGTCTCCTGCACCCGGTTTAACGGGAGCCGGGAGGGAACCACGCGCGGACTGGCATGTGGGTCAATTCTGGAAGCGTCGGAAGGGCCCTCTCCATGGATATAGACACAGATTATGAGCGACCTAATGTGGAGACCATAAAGTGTGTGGTGGTAGGTGATAACGCGGTGGGCAAGACCCGACTGATCTGCGCCCGTGCCTGCAATGCCACCCTTACTCAGTACCAGCTGCTTGCCACCCACGTGCCAACTGTCTGGGCCATCGACCAATACCGTGTGTGCCAGGAGGTGCTGGAGAGGTCACGAGATGTGGTGGATGAGGTCAGTGTCTCCCTCAGGCTGTGGGACACATTCGGAGATCATCACAAAGACAGGCGCTTCGCTTATGGCAGATCAGATGTGGTAGTGTTGTGCTTCTCTTTGGCCAATCCGAACTCTCTGCGCCATGTTCGCACCATGTGGTTCCCTGAGATTAAGCACTTCTGCCCCCGCACCCCGATCATCCTGGTGGGCTGCCAGCTGGACCTGCGCTATGCTGATCTGGATGCTGTTAACAGGGCTCGCCGGCCTCTGGCCAAACCCATCAAACCCACAGACATTCTTCCCCCAGAGCGAGGCCATGAGGTCGCTAAAGAACTTGGCGTTCCATACTATGAAACAAGCATCGTCGCTCAGTTTGGCGTGAAGGATGTGTTTGACAATGCTATACGTGCTGCGCTCATCTCTCGACGCCACCTTCAGTTCTGGAAGTCCCATCTAAAGAAGGTTCAGCGTCCCCTCCTCCAGGCCCCCTTTCTTCCTCCCAGACCACCACGACCTGTGGTGGGCATCCCTGATCCTCCTCCCATTGATGGAGAAGGTCCGGACTCTCTTTTCTGCCAACCGTTGTGTGCAGATGTCCTGTTCCTTCTCCAAGCCGGGGCCACTCGTGTCTTTGCCCATAAGGTGTACCTGGCCACTTCCTGCTCAAAGTTCTATGACCTATTCACTATGGATCTTGGAGTGGCAGGGATGGAGCAAGAGAGTGAGGAGAGCTCAGAGGGGAGCGAGGAAGACGAACAGAGCCGAAGAGGAGCCAAAGAACAGGCGGGCCGTACCAAGAGCCTGGACATTGATAAGGAGGGTGAAGGAGGCACTAGGGGTTCAAATAGGCTGCTCATGTTGCAGCAAGGCTCACTGAGGACTTCACAGAGCGATAATGCTCTGCCTGCCAGGGGCCAGCGATCTATAGGACCCCTGGGAGCAGGCCGTGCTCTTTTGGGATGGGGGCGTGGTTTCTTGGGGGTGTACCTCGAGATGGTGGATGACCCTGTGACAGGTCGGCCAAGACTCATGACAGTAGTGTCAATGGATGATCTCATTCAGAAAGGGCCTTTCCAAGCAGTGCTGCAGTACCTTTATACGGGTCACCTGGATGAGACACGTGGGGATCTAATGCAGGTGGCCACCATCGCCGAGCTTCTGGAAGTCTTCGACCTGCGTATGATGGTGGCCAACGTCCTGAACCGTGAAAGCTTCATGAACCAAGAGATCACCAAAGCCTTCCATGTGCGTCGTGCCAACCGCATCAAAGAGTGCCTATGCAAGGGCACTTTTGCTGATGTGGTGTTTCGATTGGACGACGGATATCTGCCAGCCCACAAACCACTGCTCATCTCAAGCTGTGATTGGATGGCAGCCATGTTTCGTGGATCCTTTATGGAGAGTTACATTGAGGAGGTCTCTATCCCCAACACCAGTTGTGCCTGCATGAGAGCCGTTCTGGAGTTTCTGTACTGTGGTGTGTTAACACCATGTCCTGAACTGGAGCCAATGGACCTTATAATACTAGCCAACCGCCTCTGTCTTCCCCGCCTTGTAGCTCTAACAGAGCAACATGCCGTTGAGGAGCTGTTGCAGTTGTCCGTTAAAGGAGTGGACATTGATGGCCACGTGCTGGCCTATCTGGAGATGGCTCAGTTCCACAATGCCAAACAGCTCTCTGCCTGGTGTCTGCATCACATCTGCACCAACTACAATAGCGTTTGTCGAAAATTCCCTAAAGACATGAAGACTATGTCTCCTGAAAACCAGAAACATTTTGAGAAGCATCGCTGGCCCCCTGTCTGGTTCCTGAAGGAGGAAGACCGCTACCTCCGTTctcaaaaagagagagagcgcgaggaGGAGATCTTACGCAAGCAACACACCAAACGGGGCTGGTGCTTCTGGAGACATCCATCCTCCTCAGCACCCCACATTTCCTGAGGGTCtgcctccatccatccatccatccattcaaaCCGCCGTACCCCTCTCCCTTATCTCAGTCCAGAGGCATGTAGCCAAGCCTGGGGAGCCCTGTTCCTGTGCATCCATCCCGACTGCTGGAAGCCAGTCCGGGTCTTCTTTGCCTCTGAGTTTTGGCCTTCCCTCCCCCAAGTTGGGCCTCAGCAGAGCTCAAAACGTATGTGTTATTAAATGGGAGACGGCTCGGAGAAAGTCTCAAATCTTTCTCCCTCTCGATGTTACACGTTCTACTGTGCGAATGTGACAGGTCTCACCGCAGCATCACGTAGGGAAAGGCCATCATTGCAATGACCTGTTTTCGCCTCTTAAGACTGTTATTAttacacaagacacacacacacacacactctcacaccaGCACCTCGTCTGAGCGCTGGCGCCCAGACACACAGATGCTGCATGGTGCTGCTGTGTTGAGCTTCCCTCTGTGAGACCTATTTCTGGGAAACCGTCATGTTCAATGCCTACAAGCTGAAACATAGATAGCTTTGAATACAACTAGCAACTAAAATGGCGGCAGggatatctttttaaaaaagttaaaataaaggGGTTATTTCCCTTGCCTACATTCTCACTACAAACAATTCTCCATTTTGGATCTTCCGTTGCCCCGTATTGGCTTTGAATACCAATTGTGTTGCCTACTGAAGAACTGTTCTTTGGATTGCTTGTCCTGTTACAAAATTTTGCTCACGTGGTAAAACAGAAGGGGTGTGTAGTTCAGGTCTGTCACTCACTAAAAAACTCTAGGCCAGCACCAAAGacagacatacatacagacaACTCGTTCGAACACAAACGCCTTACCAAAATCTGCAGAAACAAAAACTTGACAGCAAGTAAACTACAAAATTAGGGCTATTTTTACCACTGCCAGGAGAGTATTAACAATCACAGCTGTTATATGACGTTCTGTAGATTGAGCTTTGTGATATGACCACTAGCAAGCGCCTCGACTTGCTTGCCTTTAACCTCCACCACTGGGGCCCATGCCTTCTGAGTTTACCCTGCTTTCGAAAGTATTAGCTACTCATTTGTTTTCCATCCTTCACATCCTTGTGAAATGCACTCGTTTTTGTAGCACTACTTCAATCTTAGCTATTGGCGAAACCAAAAAAGTAGGTTGCAATGTTTGGTATTCCTTCGCCGCTCCCCTCTGTTACTCCTCTGCTCCTCTACCTCTGCAGAAACTTATCGATCCGCTTCCTGTAGTGTTTGATACGTTGCAACGTGACGCTTCACCTCGCACTTTACATACGCAGATAAAATCGGTGCTCAGGATTAACCTGCTAAACGTCACAGCGTTCAACCATTCACCCATTGTACCTTTAAGGGGCGGTTACACCGGACTTTGagcgacaaaaaaaaaaaacactgcagtgcTGCGAACctgcaaatttaaaatttgtgtttgtttccacTAAGCTGTTAAGCTAAAGATCTTCTATTGGTCAAACGTCTAATCTTGACACAAATGTGAAGAAAGTTTGTGTTTCCAATATCCAGCATTTGCATGcgtgtgaatgaaaaaaaatggaaggGAAATGTCGTGTGACCGCCTCTTTACACAAGTTTACCTACTTTGACAATCTTAACAGAATATCCCAACACAAGCTGTGATCAAAAGtgtatctttcttttttgattgAAAAGCTTTCAAATTTAAACTTTGTGGTTAAACTGACAGTGATCTGCTAACAGCTGTACTCGGTTTTcgtttcctcttcctctttccaGACGTGCATGCGTTGTGAAGTCTTGCTAGCATCCGTTTGCTAGAGTCTGTCTCGACTGCCTTCCATCTGAAAACATGAGTGCCTATGACCATTGTTACACCTTCCCTTCTACATTCAAGTATTTCTCGGTGAAGCAtgtttgttttgcctgtttcGTGCCTTTttaacaaaagtgtttttaatagctACTTTGGAGGTTGGTGAGAAATCGGGAGACAGTTTAAGTTTTCCATGCCACCCTTTTTCTATTTCTGGCTTTCTGATTTCGCTTCCTCGAGGCTGCACCCTGCTTTTCGCACCAGACGAGCTGAAATCATCAACAGCTACAAAAATAGACACGCAGAGCCCATGTGCTCAGACAGGCCgatatgcacacaaaaaaataaataaatcgcacacgcacaaaaaaagaggaaaatggaGAGCAGACACTGTATGGCTGTATGCTTCCATTTTCACCAGTAGGTGCACTTTTGTAGGTTCATCCCATTaagatgctttatttataggGGCAGACtgataaatgaatgtttatagaCGCCACACTATGCCTAAAGGcttaataattagtaaaataaCGAATGTACGACCTTACTGTGTATTTGCAGACTGGCTCTGCGATAAATGTCTGCCCCTGAGTGTTTAAGAAGAACAATTCGAGAATACTTCAAACAGCAGCATGCTTGTTGGGATGGAAAGTGTTGGGCTTGTTagcacttttagtttttttgactatttgcttttgcacttttatttcaGAGTTGGTCTGCCTTTGATGTGCATGGCATTGACTGTTTCTAAACTatggctttttaaaacattttgtagcaTGGAATGGTTTCTTCCATTAAAAAGGTGCTCCTTACGGCCCTACGTATTTTGTGcttacgttaaaaaaaaaaaaatccttcataCTTACTGTAAGACTTTTATGTCGGTACCTTGTGCTTTAATCGAATATGCCTTCATTAACTTCAAGGACAtgtgatgtgtttttctgttgagATTAGATGGTTTAGtagatttcaaataaacagtATTACAGATTGGATTGTTTATCCCAAatgcaaattctgtcatttgctcaccctcatgttttttgtaacatgttatgtatgaatttatttcttctacacaacacaaaaacatccaACTGAACATTATTGTATGGACAAAAGCATccttcaaaacatatttttatgttctgtaGAAAAAAAGGTCGTGATGGTGAGGAAATGACTATTTGGGTGaacatttgctttaaattgAGAGATTGATTCAGACAGTTACTAACAACAGGAAAAACAGTATAACTGCTTGCAAAATATGCACTTTAGCTTCAAATTTGATACAAatgattttctttcaatttAACAAATTGTAAAGTATTTATCGGTGCACGTTTACAGGTAAGATGTGCATGGGAATGGTCTAAGCGCTAACTTGTATGTAATTATAAACAACAGTAGCTTTCATTACTAAGGAATTATCATGCACTTTCATCACGtgaaaaaactattcaaaacaGCCCTCATTACAACTTTGAAAAAATCCATCCAAATCCCTTACTTACTATAAAACAGATACTTAATGTTATACTAAATGTTAATCATGTTCACGTTGTGGTTGTAGTTCTATTTATTTGATAACAGTACATTAGAAACCCACTAGGTTAAAAGAATCGCGAGAGCACTTGAGAATTGTGGTCTATTGTTGTGTTACCGTgcctttaattgaaaaaaaaaaaaatctttctgaaGAGAGGTCACTGCCTTTGATCAAGGTAATTgtagtgcacacacacacacacacacacacacacacacacacacacacacaaactttaaCTGACAGCCATCAGACCACTGTATTGCTCCTTCTGCATGCCTGTGGCCAGCATGTAGCAATACCCTCTGCTCTTTGAgtgatgtgaaatattttgaagcTTTCCCCCTaacattttagatgttttcaacattttttttcttccttttttgaTAGTGCTGAGCTGAGAGGAAACGTGTGCTTGTTGTGAACAGTGATTATAAGTATTTGGATGAGAGTAAACGTAAACATGCACATTAACAGAGTCAGAGGTACTCTAGCACCCTCTACAGTCAAATGAAGGTCAgggttttactttatttcatattttacaaggCTAAGAGTAATGTAAATTGGTGTGGGACAGAGCATATGCTACACAATATTCATTTGGAATATAACTTTGGTTTaggtgtttttgtaaaaataaataaaatactaataccAGAGAGCAGTTATTTTAGTAactgtgattgttttttttggtatgaAAACACTTAAACCGGAAAGGTTAACCACATCTTTCTGCTTGTACAATTAATAATCTGACCTCAGGTCATAGGCAGAGACCACTTCAAGCCCTTGTTAGTTTCTGTGTTAAAACAGAGGGGCTCTCCAACCAACTTCCTTTCTGTGCTTTGAAATCCACTTTCATCTCCGTTAAAGAAAAAGGGCCGTATTACTGAACAACATCTGCTAATTATAGTGCTAGCACTTGTGTGCCCATTGGCAGATGCTGTTCCTCTTTCCACTTGTGGTGAggtgtcctttttttttttgtcttcttgaGGTGAAGCGCGTGTCGCTGACTGTTGACCCCACGCTTGACCTCTCTTCCTCGTTCAAATCTGTGACTATTTTAAGCTCTTTTGCACTTcatggttttctttttaacatctTATTTCGATTATTGTTTCTGATACGTGTAATTATTGTTCTTGTTCTGAACcagaaaaagcacacacacacacacacacacacacacaacatacacacactactaagggcttttaaaatacaaaatcagaatgttttgctgctgttgcaaaaaagaaaaaagaaaaaaaaagttttattgaatcgtttgtaatatttttgaacaACTGTGATTTGTACAAAATGGAGCAAAAAAGGGGTTGGAAAAAGGTTATctgtttcagtattttaatgtttgcttggcttttaataaaacttaacTGAACTCTTTGAactca

Function

symbol description
rhobtb2a Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Predicted to be involved in several processes, including cytoskeleton organization; engulfment of apoptotic cell; and regulation of cell shape. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and cytoskeleton. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy. Orthologous to human RHOBTB2 (Rho related BTB domain containing 2).

NR:

description
rho-related BTB domain-containing protein 2-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07868 RHOBTB1_2; Rho-related BTB domain-containing protein 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238861.1 True 7374 mRNA 0.44 11 15951062 15978748

Neighbor

gene id symbol gene type direction distance location
wdr54 wdr54,LOC107746838,LOC107552569,LOC107718338,LOC107676672,LOC107680694 coding upstream 23693 15921758 ~ 15927369 (+)
aqp3a LOC107680708,LOC107746837,LOC107552570,LOC107718337,LOC107676667,LOC107553599 coding upstream 40184 15906315 ~ 15910878 (+)
mob1ba mob1ba,mob1b,LOC107680716,LOC103036920,LOC107553598,LOC107584591 coding upstream 65958 15878865 ~ 15885104 (+)
rufy3 rufy3,LOC107718333,LOC107676661,LOC107746833,LOC107552574,LOC107680746,LOC107553597 coding upstream 75746 15861054 ~ 15875316 (+)
tbx16l LOC107681481,LOC107746831,LOC107552576,LOC107553570 coding upstream 129328 15815277 ~ 15821734 (+)
si:dkey-40c11.2 LOC107680639,LOC107552538,LOC107746841 coding downstream 7038 15985786 ~ 16014415 (+)
nos2a nos2a,LOC107553584,LOC107719931 coding downstream 97493 16076241 ~ 16083755 (+)
LOC122345915 hspb11,zgc:158640,LOC107746844,LOC107681463,LOC107719933,LOC107660270 coding downstream 109193 16087941 ~ 16088913 (+)
tmem8b tmem8b,si:dkey-84j12.1,LOC107553610 coding downstream 166146 16144894 ~ 16251772 (+)
LOC122345865 si:dkey-114c15.7,LOC107597238,LOC107672487,LOC107733230,LOC107592265,LOC107748635 coding downstream 400607 16379355 ~ 16389644 (+)
G37047 NA non-coding upstream 31777 15918506 ~ 15919285 (+)
G37038 NA non-coding upstream 90959 15859759 ~ 15860103 (+)
G36993 NA non-coding upstream 127311 15821892 ~ 15823751 (+)
G37024 NA non-coding upstream 135997 15814853 ~ 15815065 (+)
G37023 NA non-coding upstream 136814 15813103 ~ 15814248 (+)
G37123 NA non-coding downstream 74284 16053032 ~ 16054008 (+)
G37155 NA non-coding downstream 117237 16095985 ~ 16097005 (+)
G37260 NA non-coding downstream 681773 16660521 ~ 16660743 (+)
G37286 NA non-coding downstream 809082 16787830 ~ 16812417 (+)
G37291 NA non-coding downstream 848377 16827125 ~ 16827476 (+)
G36640 NA other upstream 1230575 14718532 ~ 14720487 (+)
fgf5 fgf5,LOC107599194,LOC107746784,LOC107663393,LOC107661278,LOC107602014,LOC107744874 other upstream 1298151 14645945 ~ 14652911 (+)
mrpl1 LOC107663378,LOC107746869,LOC107752362,LOC107599195 other upstream 1601071 14347562 ~ 14349991 (+)
LOC122345214 NA other upstream 1613297 14333023 ~ 14337765 (+)
LOC122345142 NA other upstream 1645758 14300043 ~ 14305304 (+)
LOC122345998 LOC107718355,LOC107676655,LOC107746825,LOC107680877,LOC107553589,LOC107552586 other downstream 413049 16391797 ~ 16395562 (+)
G37227 NA other downstream 495960 16474708 ~ 16560732 (+)
G37228 ncor2,LOC107742750 other downstream 507872 16486620 ~ 16561741 (+)
LOC122344991 camsap1b,LOC107587696,LOC107672541,LOC107552625,LOC107720249,LOC107745551 other downstream 1386101 17364849 ~ 17372859 (+)
LOC122345691 NA other downstream 1547276 17526024 ~ 17527444 (+)

Expression


Co-expression Network