tbx16l (LOC107681481,LOC107746831,LOC107552576,LOC107553570)


Basic Information

Item Value
gene id tbx16l
gene name LOC107681481,LOC107746831,LOC107552576,LOC107553570
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 15815277 ~ 15821734 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238895.1
ttgtaaatttaataggttacagattacaaattacattaataagtgtatctttttctatttctttattaaagtaatttatcTGATTACATTTAACTACCTTTTGATAgcttttctaatgttttttaactgttaatcattttgaaaaattttaaGCAGGCAGGGTtaactttatattaatattcagcaCTTATTACTGTCAAGACTTTCAAAATTCTTTTTCACTTGAATTACTGTTATAATACTTTAATTGTGAAATGCAACCACCACAAATTCAAGACTCGCTCATATTTGCTTCGAGATCATAAAGTAATTGAAATGTAACTGATACAGATTACAGTTcaattttttctgtaatttaattatgtaatacaTTAACTGGTTACTTACTCCTCAACAACGCTGGTGGgacaataaaacataacttaAACATGACTGAAGACCCGTGTACTAGACGTGCTGATTCTTTGGTTCTCATAGGAAAATAACTTCTCTAggaaataatttagaatttgTTGTTGGCTACTTTCATGTTAAACATTACTGCCTTGATTTAAATAGTTTAGACAAAAAACAGTTGTATATTAAATGTGCGCACAcattaaaatgtctgaaaagTGTCAAATGTGAGCCAGTCGTTTTAATAGTTATTCATATGATTGCAAACTCCAAAGTTTTCCGTATGCAGGGGCTCAAGTTGATCACATGGGTTTGTTGCACTGATCAACAGAAAGCTACTgcgtttgacttttttttttgctaacaaAATTTCTCTGTCTGAAAGTCTATTTCTTGAAAAACTCAGGTGTTTGTGAAGATAGGTAGAAGTCTTTAACTGCTTCAAACATCTCCAAAACCCAAATAAAACTACACTTACTGCTGTCCAGGATTTTTCTGTTTAGGTCTAATTCAGAGGGTGTTACGATAGAGAAAGTTATTTAGCAGATTTTAATATTCAAGATTAGAAATGATCTGCTGAAATTTGACAGTTTGGCCAGTAGCTAATAAATAGTGACTTCCTGCAGTAATGAGGGGACAAACTGTTGGGGTGATTAACacctatatgtgtgtgtgtgtctgtatgggTTTGGAGGAAGTGTTAGGGAACCCTTGGCCTCTAAAGTCAGATGCACCCCCCTTTCCCCAGATCCAGAGCTTGTTGTTTCTACACACCTTTGTGGGCAAGCTGGAGCACAAACTGGGAACTGCGGGAGACAAAGAGGCAGATCAAAGACGAGACTGATGTTTTGACAGAAGTGCACATACACACCTCTGTCCTCTTTGAAGTTATGGAAAGGTAGCATCCTATGGATAGTCCTAGCAAGTCACTGGCTTCCTACAAACCCCTGGACAAGTCACTTTAGTTTGTTACTCCGGTCTCATGGTCATGTATCTCCCGGAGGAACGGCCTGTGCTGGACCTACCTTACCAGATGAATTATTTGGCTAATAACTATGGATATTATCCACAAGACTGTAAGGATCCCATTTTCCGCACTCAACATGGCCTCAACAGCAGGATGAACAGTCCTGAAGCTGAACTGACCTCGCTGCCAGTTCATGTGTCCCTGCAAGATCGAGAGCTTTGGGACAAATTCAGCAGTATTGGCACAGAGATGCTAATTACTAAGTCTGGAAGGCGGATGTTTCCCAGCTGCAAAGTAACAGTGACAGGACTGAATCCAAAAGTCAAGTATGTGGTGATAATGGACATGGTGCCGTTTGATAACCACAAGTACAAGTGGAATAAGGATCGCTGGGAAGTGAACGGTTCGACTGATCCACACCTGCCCAATCGGTTCTTCATCCATCCAGACTCTCCTGCACCCGGAGAGAAATGGATGCAGTATCCAATCTCCTTTCACAAGCTCAAACTGACCAACAACACCCTTAATTCTAATGGCCTGGTGGTTCTCCACTCCATGCACAAATACCAGCCCCGTCTGCACATAGTCCAGTCTCCAGACCCCTGTAATCCTCACAATCCTGGCGGATATCTGCGCTTCACCTTCCCTGAGGCTGCTTTTACAGCTGTCACAGCCTACCAGAACCAAGAGATCACAAAACTCAAGATTGACAACAACCCCTTTGCTAAAGGCTTTCGTGACAACGGACTGAATAGAAAAAGGTTTAGAGACAAAGAAAGCCAAGAGACCCAGGATTCAATTGGACAAGCCAAACAGCGTTTGACACCAAATGAGCATGTAGGACAGCCAAAGAAAGACGAAGTGGATGTGACTGTATCCAGCTCTGTTGACTGCAGCAGACGCCTGAATTCTTCAGAAGTGGCTTCCTCTGTCACTCCCAACCCTTTCATATCAGCCTTCATAAACCCCAGTACTGCTGGAGAACCTTCACCCCATCAGACCCACACCATTCTCAGCCTCGGTAACAGACACCTGAACAGTCCCAGAGAAGCCAGACCCTCCAGCTTCCATAGTCTGTGTGCAGCTTTGCCCGTGGCCCAGAGCTCCTGCGTCCAGTCCTCCACAGGAGACGTCAACCTCAGCAGACTGCCTTCTCAGATCAGCAGCCCTCTAAACCCTCAGCAGCACCATCACAGCAGCCCAGCCTCTCAAACCCCGGGCCGATCCATCCTCCAGCTCCAGCCTTATTTTCAGCCCCCTCCGCATCCCTCACGACAGTGTCCCGACATGGAGCTCCCCCTTCCTCTGCCTCCCAAACTGAGCCGGATGCAACTCCCTGAAAGTGCTCTGAGGAACCTGGAGATGAATCCAGTCTCTGACTGTATTAATCCGAGGCCCCTCACCAACATCCTCAACAGGATCCATTTTCGATCTTTAGCCTCTGGACCATCGGTGAAGGTCCTGCAAAATCCCCCCCAAGGGGAGCAGTACCTCCGCGGCGCAGACAGAGAGCTGCGTCCGCAGATCTATCCGGCGGTTCAGGAGTACATCGATCAGCAGTTCGTGCTGAGCAGCCAGACTGAACACAGATCGCAGATGGACTACATCAGCGCCAGACCGCTAACTGAATATTACTGCGAACAGCAGACTGGGAAATGAAGTTCATCAGTCATCATCGAATTATCCCTCACTTTGCTCATTTCCAGCAGAGCCTGAGCTGCTCTGCGTTAGTAGTTTACAAAGCAGAATCAAGTCAGGCACCGAGGGCTTCCCAACAAaagaatgtaaatattattttcagtgGGACATGATGTTGTTAGCTGTCACTGACGTCCATATTTATGTTTAGTCTGTTGCCGTCTGTCTGAACTTTAAACTGCTGAACATCTCAACACGAAACCATTCAGAGTTGTAGCTGACTTCAAGCAATTCTGCAGACTACACTTTTGCCGGttccatccattttttttcattttctacatTAAACCTAAATACATAGTTCTGGGTTAAGTTTGA

Function

NR:

description
T-box transcription factor TBX6L-like isoform X2

GO:

id name namespace
GO:0021523 somatic motor neuron differentiation biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0001756 somitogenesis biological_process
GO:0048514 blood vessel morphogenesis biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238895.1 True 3379 mRNA 0.44 9 15815277 15821734

Neighbor

gene id symbol gene type direction distance location
eral1 LOC107553595,LOC107676670,LOC107746830,LOC107680814,LOC107718331,LOC107552539 coding upstream 3260 15807811 ~ 15812017 (+)
LOC122344749 LOC107680837,LOC107552580,LOC107746822,LOC107680853,LOC107552581,LOC107746861,LOC107718347,LOC107676666 coding upstream 60092 15733936 ~ 15755185 (+)
trpv1 LOC107680853,LOC107552581,LOC107680837,LOC107552580,LOC107746822,LOC107746861,LOC107676666 coding upstream 60092 15748967 ~ 15755185 (+)
shpk shpk,LOC107680869,LOC107553593,LOC107718345,LOC107736096 coding upstream 82442 15728431 ~ 15732835 (+)
p2rx5 LOC107680863,LOC107746824,LOC107552584,LOC107676654,LOC107718329,LOC107553591 coding upstream 89096 15717866 ~ 15726181 (+)
rufy3 rufy3,LOC107718333,LOC107676661,LOC107746833,LOC107552574,LOC107680746,LOC107553597 coding downstream 39320 15861054 ~ 15875316 (+)
mob1ba mob1ba,mob1b,LOC107680716,LOC103036920,LOC107553598,LOC107584591 coding downstream 57131 15878865 ~ 15885104 (+)
aqp3a LOC107680708,LOC107746837,LOC107552570,LOC107718337,LOC107676667,LOC107553599 coding downstream 84581 15906315 ~ 15910878 (+)
wdr54 wdr54,LOC107746838,LOC107552569,LOC107718338,LOC107676672,LOC107680694 coding downstream 100024 15921758 ~ 15927369 (+)
rhobtb4 rhobtb2a,LOC107552568,LOC107680668,LOC107746840,LOC107676653,LOC107718339,LOC107553600 coding downstream 129328 15951062 ~ 15978748 (+)
G37024 NA non-coding upstream 212 15814853 ~ 15815065 (+)
G37023 NA non-coding upstream 1029 15813103 ~ 15814248 (+)
G36984 NA non-coding upstream 102083 15712977 ~ 15713194 (+)
G36948 NA non-coding upstream 168170 15643295 ~ 15647107 (+)
G36937 LOC107680951,LOC107553567,LOC107746860,LOC107552540,LOC107718342,LOC107676644 non-coding upstream 191984 15621825 ~ 15623293 (+)
G36993 NA non-coding downstream 158 15821892 ~ 15823751 (+)
G37038 NA non-coding downstream 38025 15859759 ~ 15860103 (+)
G37047 NA non-coding downstream 96772 15918506 ~ 15919285 (+)
G37123 NA non-coding downstream 231298 16053032 ~ 16054008 (+)
G37155 NA non-coding downstream 274251 16095985 ~ 16097005 (+)
G36640 NA other upstream 1094790 14718532 ~ 14720487 (+)
fgf5 fgf5,LOC107599194,LOC107746784,LOC107663393,LOC107661278,LOC107602014,LOC107744874 other upstream 1162366 14645945 ~ 14652911 (+)
mrpl1 LOC107663378,LOC107746869,LOC107752362,LOC107599195 other upstream 1465286 14347562 ~ 14349991 (+)
LOC122345214 NA other upstream 1477512 14333023 ~ 14337765 (+)
LOC122345142 NA other upstream 1509973 14300043 ~ 14305304 (+)
LOC122345998 LOC107718355,LOC107676655,LOC107746825,LOC107680877,LOC107553589,LOC107552586 other downstream 570063 16391797 ~ 16395562 (+)
G37227 NA other downstream 652974 16474708 ~ 16560732 (+)
G37228 ncor2,LOC107742750 other downstream 664886 16486620 ~ 16561741 (+)
LOC122344991 camsap1b,LOC107587696,LOC107672541,LOC107552625,LOC107720249,LOC107745551 other downstream 1543115 17364849 ~ 17372859 (+)
LOC122345691 NA other downstream 1704290 17526024 ~ 17527444 (+)

Expression


Co-expression Network