rorb (rorb,LOC107744430,LOC107730723,LOC107599920,LOC107592316)


Basic Information

Item Value
gene id rorb
gene name rorb,LOC107744430,LOC107730723,LOC107599920,LOC107592316
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 10408635 ~ 10433693 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238899.1
CTCGCGGAGGCAGTGAAAACCTCCGGTGGGTATATGCGCTCGCAGATGTCATGTGAAACCCCGCATGCTGGCCTTACCGCACAACTGAAGAGTCCGAGCACCGCTTCTCGCACCTCTGGAATGGTTTTGCACAGTAGTCTCCCTCTTTGAAGAGACCAAACTTCACCACCgaggattttgtttttttactctggtttatgtttgtttcttcatgacTGACGCGTTCGGGAGCGAGTCGCCACCACTATGCGAGcCCAAATCGAAGTCATACCATGCAAAATCTGTGGAGACAAGTCATCAGGCATCCACTATGGAGTCATCACATGTGAAGGCTGTAAGGGTTTCTTCAGACGCAGTCAACAGAACAACGCGTCCTACTCCTGTCCCCGACAGCGCAACTGCCTGATCGACCGAACAAACCGCAACCGCTGCCAGCACTGCCGGCTTCAAAAGTGCCTGGCACTGGGCATGTCCCGGGATGCTGTTAAGTTTGGCCGCATGTCCAAGAAGCAGAGGGATTCTTTGTACGCAGAGGTTCAGAAACACCAGCAGAGGCTTCAAGAGCAGCGGCAGCAACAGACGGGTGAAGCGGAGGCCCTCGCCCGTGTTTACTCTTCCAGCCTCACCAACGGCCTCAGCACCCTCAACCATGAGATTGGGGGGACGTACGCTAACGGTCATGTCATAGACATGCCCAAGGGTCAACCCAACGGCGCACCCGGAGGCTACTACGGAATGGACTCCACACAGGCCAGCCCGGATCAGTCAGGACTGGACATGACTGGAATGAAGCAGATCAAACAGGAACCCATATACGATCTCACCCCCGTTCCCAACCTTTTCACCTACGGCTCCTATCAAGACAGCCAGCTAGCACCTGGAGTGTCTATGGGGGAATTAGACCGAATTGCACAGAACATCATAAAGTCCCACCTGGAGACGTGTCAGTACACAGCGGAGGAGCTTCAGCAGCTAGCCTGGCAGACGCACTCCTACGAAGAGGTCAAGATGTACCAAAGCAAGacacGGGACGTGTTGTGGCAGCAGTGTGCTATACAGATAACTCATGCCATTCAGTACGTGGTAGAGTTTGCAAAGCGCATCACTGGCTTCATGGAGCTTTGCCAGAATGACCAGATATTACTACTTAAATCAGGGTGCCTGGAAGTAGTGCTGGTCAGAATGTGCCGGGCATTCAACCCCCTCAACAACACGGTTCTGTTTGAGGGGAAATATGGAGGCATGCAGATATTTAAAGCTCTAGGCTGTGATGACCTGGTCAGTGCAGTGTTTGACTTTGCCAAGAGTCTGTGTTCACTGCAGTTAACGGAAGAAGAGATTGCCCTGTTTTCTGCTGCCGTGCTCATTTCTACAGACCGGCCGTGGTTAATGGAGCCCAGGAAAGTGCAGAAGCTACAAGAGAAAATCTACTTTGCCCTGCAGCACATCATGCAAAAGAACCATCTGGACGAGGATGCGCTGGCCAAGCTGATTAGCCGGATCCCCACGCTGTCGGCTCTGTGCACCCTCCACACAGAGGAGCTTCAGGCCTTCCAGCAGCTCCACCCAGAGACGGTTAACATGCTGTTTCCCCCCCTCTATAAGGAGCTTTTCAATCCTGATGCCGCTGGCGTCATGCCCAAATGACCGCGCACGTTCACACGCACACTTCGCAAAGTCTTTCATTCAACAACCGGAGGCGTTGCAGAGGATGAGCACTGTGTCGCAGCATCCGCAGATTTTGCAgccacaaaaaaatgaaactctAGGAATGTCCTGCACTTCAAAAATCCAACTCAATTTCACCGGTACAGTCATAAGAATGTATATATGCGCCAGCAGCAAAAGGCGCCTTCCGTTTGACCAGAAATGTACAGACTTTAGGACAATTTAAGCTGTCTTTAAATTGGGTAAGTTAATTTGTTTGActtttctcgctctctctctctctcactttttttattttacacaaaatattgtTCTATTGAAATGAGAAGGTGGGGAGTGCATTCGAAATTATAATGTAGTCTTTCTCTAGTACAAAGCGGTATTCCAGTATTAAATCTTGTTCTGTTAATATTTTagtcataatttaaaaacaacagtggtCTGAAAGACCCGTACCTTGTCTAATTGTAATTTTTCGtatttgttttgtagttttacCTGTACAGAATATGTGAAGTTGAAACTGGTATAAGGTTAACGGGGGACTAACTTTGTTTGGCCACGTTTAAAAGCCTTGTCTGGGCTATGTAGATATGTATAAACGCCACCACAACAATAATCCTACAACTAAGGATTTTGAAGTGgaaaaataattgataataattgaTACTTTTCCATACAAAAGtatagagatatatattttacaaaaattgtatGGCCGATTACCATCTTGTCAGTCATAGCTGCAGTTTCTGtaactgctaaaaaaaacaatctggtCAAACGTGACTTCACGGAAAGCCCTCAGAATTCTTTGAATCTATTATCCTGTTTGCTCTAAATGCctcaaaatgctgtttttactgcCACACTGCCAAAACTAATATAGCACTACTGTAGTTGAGCTGCAGCTGTTTGTCTGGGAAGACAGGAATCACTAGTACAGTACATGACCATTTACTGCCAGTGATAAGAAGTTAAACGTAACTCTTTTCTGCCACATTCATACATCATTCTCTGACTTTAGCAATAATGCCCAGGACAGGCTGGGTCTGTGGTATTCTTAACTTTATGCTAAATGTAAAGCACTCATCCTCATCAATTTATTAACTGTTTTTTGGACAATGCATAATTCAAGGTAAAAATCAGTCAGttgcaaaaattaagttttataaaGAAACAATCATGAAATTTAAGTAATAAGGTGGAGctgactaaatattttttttatacattctaTTGGAATTTTAATCATGATTTAGAACTAATCCTGAAAGATCACAATCAATTAATTCCTATATAAAACTAAGATCCCAGTGGATAAACTGCAATTTTACATGttcttatttatgtatttattattttatttatttattaactttttcaACAAAAAGTGCAACATTTAGgaataaaaaaggaatattgTTCCAATTCGGTAATTGTCTTTGGATCTACCGGAACAATTTTAGAAACAATCTGAGCAAATATGACAGCATTACCAGTCATTCTTAAACAACCACAGAGAAGTTTCCTATAATTCAATATTGCTGAGCATCCTTAACTTGCTGTAATCCACTGTTTGTAAAATCTTAATGCAAGTGGGATATGACAATCATCTTTGACTACTCATATTGCAGGATAGAACCACAAAATGCAGCTACTATAAATTAGGGTACCTATTAATTCTACAAAGGTAGTTTGGGTTTGGACCCTTTCGGTCCAAGGTAAATCTTGTAAAGTACCAACTCATACCACCAGGTGGAGATACTGAGAGAGCTTTTCCCCCTTCTCTTGACCTGTACTCACAGGATGTAAAGCCATATGTCAGTTTCTTATgaaggaaaaaacacaaacacgcaagCTAGGAGTTGACATGCGGTTATACCGATCAGTGAATTTTTAGTAGGTCttgatgcatttatattttgaaatgcacttGAAAGCACTTAACAATGAAGGATTAATAACTACAGATGGTATTGGTattaaaacatgcacaaatgtAGTCTGCTGAGAAGCAATTATACTACCTGTTCAAGTCCTCCTACTGAACCAAACGCTCTCAGCCCAACTTTAGGGAATGTTTCCAGTTCCTTCAGTGTCAGTTACCTGTTCAAGACAATCATTTCTGGGTGCATTTTTTCTTGGCACCCATCTCAGGGACttctcttttaatgtttttaatagaaagagagtactatttaaaaaaaaaaaaaaggacatttttaggGAATAAAATACAATCACAGCGGTTTCTTCACATACAAAACCAACCCAGACAAggctttggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgcgtgcgtaaAGCGTATACCCACCGTTGAGAGGTGAAACAAGCTTGACTGTGGAGAAGGCCTCGCCGCACTGCATCGCTTGTTGCACATCCCAGCAaaacagctctctctctctctctctctctctctctctctgtaaataTCAATGTGCAGCAGTGTACTAGCAACGGTGCCTGTGCTCCAAATTAAAACGTTGTAATTATTAAGCATCTCCTGAAATGAAATGGATTTTATGTAAGTTAGATTATTTATACAGGGCATGAATAAGCTGCTCTCTATCTATTTCTATGCTCATTACAGAAAATGGATTCagtcagaaatcattttaaacttatgatgaaggtttttttttcgtATTAGACTGTGAATTGAGGGCGAGAGGAATTTGTATCTATATGAGAGGTTCAACACTGTTAGGTACTGTAGCAATAACTGGAAGCATTTACTACAGTCATCTTTGCATTctaagattattttttattttattataattatattattattagcctaTTGTTCAGTTATTCTTGCATGCTGGTTCATAATAATGAAACCTTTGggcttttgtgttttcttatgTGTTGCTGATGGAGGGTGGGCAATGGGGAGGGGGTGGAGCTGGGCTCGGGCTTTTTATTCTGAATGTTTCTGGGGTGTTGACGGAACTCAACACACCCTGTTCATTCTTTTCGCGCACACAGACATAAGCACAAAGTATTTCTTACTGTGTAGGAATAAAACAAGGGCACAGAAGGTCAAAACGTACTTTTACTCAAGCGCGCGGAATCAAAGCTTAAAGACGCCGGTGGTTACGCACTAGGGGCGTTATGGCGGGAATTTTTCCATGAGGACAATTCTATTATGTGGGAGCAACAGTTAGTTAATGTCTGTTTACTACAACTTACCCGAGTAATAACATCTGGGGTTCTGTCAGATACATCTTGAATGTAACTTTATCGCCCTCGTGAGGTTTGTTGTAGCCGCTAAAAccagggctgtccaaactcgCTCCTGCAGGACCGGTGTCCTGCGGAGTTTCGCTCCAGCCCTAAATcagacacacctgaagcagctagtCAGTGTCTTACTAGGCATGTTAGAAACTTCcatgcaggtgtgttgaggccaATTGGAGCTAGACTCCGCCGGACACCGGCTCTCCAGGACCGCGTTCGGACAGCCCTGCGTAAACCAACGCAAGGGCTCGCGTTGGGAGTGCGTCGATTAAGCGCTTGCGTCTGCGTACTTTGAGTATGTGTCAGCTCCTAAAAAAGCGACCCCGTACCAGCAAACCAGCtataagtataattaaaaaaatgtagatttgtGCATCTTCTGAAAGCTAAATATataagcttttcattgatgtatagaaaatacatttgttaGGATGGGCACattttgaaactattttaaaatagaaaaaaaggaaattcaaaatattgagaaagttGTCGATGAATGACAAGtacttattacaaaaaatacaaaaaatgctcatggaacatgatttttagGCTACTTCATATTctaatgaatacaaatttgatCCATACAATGCATAGttggctattgctgcaaatatacacattataccGATgagtggttttgtggtccagggtcacatattagcAGTCTCTTATACTTCCGCTAATTGAGTTATATCAACTACATTAGTCCTACACTTGAAATGAAGGaaacgtgtctgtgtgtgattttgAGTGGTATACCCACATGTGACAACAGACGGCTATTCTACTGAACACTACTGATGCATACtacacatttcagtttttccccttttcttttcttaaatattttgttaatttatgaATCGGAATGTGTCTGTCTCCCTcgatgaaaaaacaacaacaaacaaaggtAGCATCTGTTACCAAAACCCTTAAGACTGTATGCGTGCAGCATCTTTTTATGTactaaatatgtaaacatttttgttttcaagtgCCATAGCTAGTGTGAAGTGAAGCTGAATGGCATTACGGGGTAGATGCTTTACTGTATAAGTTGTTTACTTGAGAAGCAATCAAAAAGTGGAATTCAGATGCAAGTGTGAATATTCAAACAACCAACTGTTTGTTGTTCATGGAGAACGGGCTCTGATTGACAGAACTTTAGCGCATGTCCACAATACAAATAAAGCACATGTAGCATGGGAGGGTGGGGGCTTCTGTTAACTTGCCAacagtttgagtgtgtgtgtgtgtgtgttgtatgtacTGTATAAGTGAGTTGGACTGTAAGACAGTATAGAAATGAATGGTGAATAGCACTTTGTGTGATGGACTGAATACGTATGCATGTACTCGTTTGAGTCTGGGGGGGTGGGTTGAGCTTGATGTGCAAGCATTGTGAAATGGACATGTCAAAGTACTGGTTAATCGAGACCTCAAAGTGTCTCCTCCATGTTGTATATACTAAGCGAAGGACTTAAGTGATTTTTGttaaattctatattttatggCTTTTGTAGACATTTCTTtgtgggataaaaaaaaataaagaaaattttatGGA

Function

symbol description
rorb Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in alar plate midbrain region; immature eye; and nervous system. Human ortholog(s) of this gene implicated in idiopathic generalized epilepsy 15. Orthologous to human RORB (RAR related orphan receptor B).

NR:

description
PREDICTED: nuclear receptor ROR-beta isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08533 NR1F2, RORB; RAR-related orphan receptor beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238899.1 True 6555 mRNA 0.42 10 10408635 10433693

Neighbor

gene id symbol gene type direction distance location
mfsd3 si:dkey-229d2.4,mfsd3,LOC107744428,LOC107672752,LOC107673419,LOC107599916,LOC107592373 coding upstream 47568 10342197 ~ 10361067 (+)
anxa1a LOC107744429,LOC107599917,LOC107673431,LOC107738289,LOC107592317,LOC107672753 coding upstream 67515 10337223 ~ 10341120 (+)
LOC122346143 cyp1d1,LOC107599971,LOC107673361 coding upstream 84000 10319660 ~ 10324635 (+)
tmc2b tmc2b,LOC107744486,LOC108255389,LOC108434469,LOC103356627 coding upstream 90031 10309609 ~ 10318604 (+)
tmc1 tmc1,LOC107672717,LOC107738298,LOC107592401,LOC107599958,LOC107744426 coding upstream 101942 10297132 ~ 10306693 (+)
abca2 abca2,LOC107730718 coding downstream 35983 10469676 ~ 10524790 (+)
dph7 dph7,LOC107730721,LOC107672791,LOC107744432 coding downstream 93397 10527090 ~ 10531080 (+)
pnpla7b pnpla7b,pnpla7,LOC107744433,LOC107673412,LOC107599921 coding downstream 99494 10533187 ~ 10546933 (+)
emid1 emid1,LOC107599927,LOC107744434,LOC107673410,LOC107730716,LOC107672770,LOC107592308 coding downstream 119282 10552975 ~ 10608867 (+)
ewsr1b LOC107599962,LOC107744436,LOC107673396,LOC107592307,LOC107672746 coding downstream 177881 10611574 ~ 10619892 (+)
G35043 NA non-coding upstream 74827 10333219 ~ 10333808 (+)
G35042 NA non-coding upstream 78313 10329889 ~ 10330322 (+)
G35041 NA non-coding upstream 81174 10327031 ~ 10327461 (+)
G35040 NA non-coding upstream 81921 10325866 ~ 10326714 (+)
G34959 NA non-coding upstream 116774 10288424 ~ 10291861 (+)
G35081 NA non-coding downstream 113528 10547221 ~ 10547625 (+)
G35197 NA non-coding downstream 379764 10813457 ~ 10816301 (+)
G35202 NA non-coding downstream 404319 10838012 ~ 10838367 (+)
G35229 NA non-coding downstream 511363 10945056 ~ 11019192 (+)
G35267 NA non-coding downstream 753561 11187254 ~ 11187694 (+)
fam219ab fam219ab,LOC107744421,LOC107595023,LOC107673386,LOC107752501,LOC107672754,LOC107592322,LOC107673387,LOC107595025,LOC107744422,LOC107592323 other upstream 268902 10064217 ~ 10139733 (+)
si:ch211-102c2.4 NA other upstream 609277 9796381 ~ 9799358 (+)
man1b1b man1b1b,man1b1,LOC107709694,LOC107681241,LOC107560236,LOC107757969,LOC107690671,LOC107587425 other upstream 1537117 8864202 ~ 8871518 (+)
snx19a snx19a,LOC107597619,LOC107681657 other upstream 2103189 8289720 ~ 8305446 (+)
spns3 spns3,LOC107597443,LOC107712368,LOC107664514,LOC107677447,LOC107722774,LOC107587440 other upstream 2398036 8001578 ~ 8010599 (+)
osbp2b si:ch211-106a19.1,LOC107687692,LOC107744438,LOC107726355,LOC107672777,LOC107592367 other downstream 283838 10717531 ~ 10736059 (+)
senp3a senp3a,LOC107744451,LOC107687680,LOC107599939,LOC107672741,LOC107592295,LOC107726393 other downstream 493130 10926823 ~ 10933753 (+)
map7d2a LOC107687666,LOC107592282,LOC107599951,LOC107754729,LOC107726367,LOC107672739 other downstream 612786 11046479 ~ 11064446 (+)
LOC122346180 LOC107597222,LOC107680408,LOC107732624,LOC107592391,LOC107732598,LOC107687664,LOC107747817,LOC107687696 other downstream 702530 11136223 ~ 11150225 (+)
gria3a gria3a,LOC107597231,LOC107672342,LOC107732609,LOC107680378,LOC107733225,LOC107592272 other downstream 832949 11266642 ~ 11303431 (+)

Expression


Co-expression Network