pole3 (pole3,LOC107693859,LOC107587393,LOC107691032,LOC107597112)


Basic Information

Item Value
gene id pole3
gene name pole3,LOC107693859,LOC107587393,LOC107691032,LOC107597112
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 7119341 ~ 7120962 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043238991.1
CAGGGAGAGGTGAAAGGTTAACGCATGGGTTTGGATGATCAAGCGGGCTGCGGACGACTGAAGCGCGTTAGCTTTTGTCCGTACTCGTGCGTTTTGCGGGGGATTGGTTTGCCGATATTCCACCTAACGCGCACGTAAGGTAGCGAAGTTCGTTATTTAACGCACTTCGGTCGTTTTTAGGCTGATAATCGGTGTCTGTTAACCCTCGGATAAGTTCGACGGCTAGGCTAACGCAAAGTTTTCGCGGCTGTTCGGATTGACGTCTGATCGCGCATGTTGGACAACACTAATCGGTTAATATAAAACGAAACGCGTTACGTCGTCGTGCTGCATCTCTTTGAAGTGTGTATTCGGTGTAATGGCCGAGAGACCGGAGGACCTCAATCTTCCCAATGCTGTCATCACACGGATTATAAAGGAGGCGTTGCCAGACGGAGTTAACGTCTCCAAGGAGGCAAGAAGAGCAATATCTCAAGCAGCCAGCGTTTTTGTTCTCTATGCAACATCTTGCGCAAACAATTTCGCTATGAAAGCAAAGAGGAAGACGCTGAATGCTGGAGATGTGATGTCCGCTATGGAGGAGATGGAGTTCGAGCGGTTTTTGCAGCCCTTGCGGGAAGCACTTGAAGCATACAAAAAAGGTCAGAAAGGCAAGAAGGAGGCATCGGAGCAAAAGCGTAAGGACAGGGAGAAGAAGAACAGCACAGATGAGAACGACAAAAGTAGAGATGACGAGGAAGACGAGCACATGGATGATGAGCAGGAGGGAGAGAAtgaaggagaggaagaggatgtGGAGAACTGAGAGAGATCAGGATGTTTGTTTGGTCCGTCCTGGTTTCTATCAGCCATGGCAATACTTCCCACATTAATGGTGGGATAAGGACAAGCCTATGGTACTGAAAAATTTTTCactttagggaaaaaaaaaaaaaaatcctgtggAGCGCATTTCAACAAATTGCACAGTCTCTTCAAATTCAACTTAAATCAGATATAAACACAGTAATGCCCAGTTAAGCAAATTTATGGTCATAAAATGGGCGTGTTGACTTGTGATGAGGAATAAAAGGTGAGCGCTGCTTGATGTCAAACACTTTGTAAACAAGGTTTCTGTTGTGAAACTTAAGCCAGTTTTTTCCCAGGGCAACACCACATAGCCAAGCTTAATACTTTTGTACCaagtttttgtattaataaattgtaactttAAAAA

Function

symbol description
pole3 Predicted to enable chromatin DNA binding activity. Predicted to be involved in cellular response to DNA damage stimulus; chromatin remodeling; and leading strand elongation. Predicted to be part of CHRAC and epsilon DNA polymerase complex. Is expressed in alar plate midbrain region; immature eye; nervous system; pectoral fin; and pharyngeal arch 3-7 skeleton. Orthologous to human POLE3 (DNA polymerase epsilon 3, accessory subunit).

NR:

description
DNA polymerase epsilon subunit 3

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K02326 POLE3; DNA polymerase epsilon subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043238991.1 True 1216 mRNA 0.45 4 7119341 7120962

Neighbor

gene id symbol gene type direction distance location
zgc:55461 tubb4b,LOC107597040,LOC107587400,LOC108258863,LOC107693853,LOC108261046,LOC106575097,LOC103024068,LOC108241762 coding upstream 54254 7062979 ~ 7065087 (+)
glipr2 LOC107723337,LOC107598272,LOC107691043,LOC107587479 coding upstream 59915 7052970 ~ 7059426 (+)
LOC122344685 LOC107691026,LOC107598247,LOC107587401,LOC107693829,LOC100001344 coding upstream 119953 6992222 ~ 6999388 (+)
prkaa1 prkaa1,LOC107730998,LOC107693840,LOC107691024,LOC107597029,LOC107726302 coding upstream 141666 6965149 ~ 6977675 (+)
ifitm1 NA coding upstream 154844 6963937 ~ 6964497 (+)
lrsam1 lrsam1,LOC107597066,LOC107587365,LOC107723333,LOC107740956 coding downstream 3098 7124060 ~ 7133933 (+)
ptpa ptpa,ppp2r4,LOC107723355,LOC107597098,LOC107693860,LOC107587375,LOC107691031 coding downstream 28196 7149158 ~ 7157235 (+)
ntmt1 ntmt1,LOC107723349,LOC107691051,LOC107597156,LOC107693833,LOC107740971,LOC107587381 coding downstream 156023 7276985 ~ 7280143 (+)
ncs1a ncs1,ncs1a,LOC107693863,LOC107691040,LOC107740936 coding downstream 183254 7304216 ~ 7318648 (+)
fbxw2 fbxw2,LOC107723354,LOC107587370,LOC107691038,LOC107597196,LOC107740938 coding downstream 200037 7320999 ~ 7326029 (+)
G33712 NA non-coding upstream 188556 6929647 ~ 6930785 (+)
G33708 NA non-coding upstream 197702 6920745 ~ 6921639 (+)
G33665 NA non-coding upstream 624811 6475701 ~ 6494530 (+)
G33619 NA non-coding upstream 883700 6232297 ~ 6235641 (+)
G33506 NA non-coding upstream 942686 6174621 ~ 6176655 (+)
G33844 NA non-coding downstream 13332 7134294 ~ 7134884 (+)
G33850 NA non-coding downstream 13945 7134907 ~ 7135122 (+)
G33852 NA non-coding downstream 24098 7145060 ~ 7146006 (+)
G33853 LOC107723360,LOC107740932,LOC107691030,LOC107597084,LOC107587366 non-coding downstream 26073 7147035 ~ 7147616 (+)
G33857 NA non-coding downstream 45646 7166608 ~ 7168142 (+)
kank1b kank1b,LOC107730999,LOC107691025,LOC107597012,LOC107587402 other upstream 130569 6978548 ~ 6988772 (+)
si:dkey-34e4.1 si:dkey-34e4.1,LOC107700938,LOC107596916,LOC107710760,LOC107587412 other upstream 293975 6793365 ~ 6825366 (+)
dab2ipb dab2ipb,LOC107693836,LOC107710761,LOC107700936,LOC107726296 other upstream 356533 6617276 ~ 6762808 (+)
G33664 NA other upstream 627355 6473347 ~ 6491986 (+)
hexb hexb,LOC107718643,LOC107700931,LOC107655935,LOC107570862 other upstream 864001 6247795 ~ 6255340 (+)
gpr107 LOC107723348,LOC107691037,LOC107597176,LOC107693862,LOC107740935 other downstream 165606 7286568 ~ 7300729 (+)
G33878 c9,LOC107691041 other downstream 217506 7338468 ~ 7344078 (+)
LOC122345182 ns:zf-e68,myhz1.2,myhz1.1,myhz2,myhc4,LOC107598006,LOC103370545,LOC107723326 other downstream 252646 7373608 ~ 7449497 (+)
G33891 myhz1.2,myhz2,myhz1.1,ns:zf-e68,myhc4,mmyhl1,myhb,mmyhl2,LOC107723326,LOC105016875,LOC105016873,LOC106565367,LOC107088603,LOC107384188,LOC107093413,LOC103461378,LOC108241321,LOC107083053,LOC107083052,LOC107378336,LOC106938339,LOC106596646,LOC106596400,LOC106585883,LOC106597527,LOC106594844,LOC108261437,LOC106595486,LOC106598139,LOC108261508,LOC103379498,LOC103379499,LOC108444093,LOC101482140,LOC107660779,LOC108443910,LOC108415768 other downstream 299178 7420140 ~ 7520241 (+)
G33890 myhc4,myhz2,ns:zf-e68,myhz1.1,myhz1.2,LOC107723326,LOC107660779,LOC108415768 other downstream 304743 7425705 ~ 7446216 (+)

Expression


Co-expression Network