LOC122345176 (LOC107720189,LOC107660966)


Basic Information

Item Value
gene id LOC122345176
gene name LOC107720189,LOC107660966
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 17591913 ~ 17593686 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239047.1
GCAAACATTTTAGTTGTATTTGTACAATTTCAGCAGCGCTCGATTCAGTCTGACTCGTGTCCGAATCATTCTGACAGAACCAGTTCAACTGATTCGCTTAAAAGAATCGCCGCGAGAGTTCAAATCTCCATGGCTTCTGAGAGTACGTAAACATGGCCACGAGGAAATATCTCCGCAGATCAATTCAAGAAAGAAAGCGTCTACTTGAGAAATATGACCAGCTTCCTCCAATGTCCAAAGAAGCTGCAGCGCGTCTGCTAAACATCTCGGGGTCGCTGCTTTGCATCTGGCTCCGGAAAAGGAACATAAAAAACGGCAAGTCTAACCTTCCCAGGACCGTCTTCCCATCCCGCAAGACGCCTCGGGTAGAAGCTGCGGTCCTGAGGTGGATCGATGCTTCTCGTGAGAACGGAATTACGGTAGATGATGTAGCGATTCGTAAAAAAGCGACTCTCGTGGCGAGAGAAATGGGCCTCTGCGGTTTCAGGGCGAGCACGGTGTGGTTGGCACGCTTCAAAACACGGGAGACCGTAATACGAGCGATGTTCCGGGTGGGCCGAAAAACGGGAGACGCTACCAAAGAGCCCAAACCCGGTAACGACAACAAAGCCGCGGAGCCGAAAAGCAGCTTCGAAAAAAAGACTCATCAAATCGAAGCCGCGTTGTGGCGGTGGATCGATCAATCTCGCGAGAGCGGCGTCAGCGTAAATGAGTCGACGGTTTGTTCGAAAGCGGCTCGGTTGGCCAGAACCGTGGGTTTTTGTAACTTCAGGGCGAACACAGACTGGTTCGCCCGCTTTAAGTCACGAGAGGGAGTCGTGCGACAGATGTTCCGGATCGGCGCAAATAATCGCCCTTCTGATGATAAAGCACTGGCACAGTTGGTACCGAGAATGGATCTGACATCTGCAGAGACGCGACAACTTGAAGCCGCGCTTTGGAGGTGGATCGATCGGTCTCGGGAGAACGGTGTTGTTACAGACCAGACGATTCTTTCAGAGGCGACCCGCTTGGCTAGGATGGCGGGATTCGGTAACTTTCGGGCAAGCGCGGACTGGCTCAGCCGCTTTAAAACCCGTGAGAAAGTTGTACGAGAGATGTTCCAGCTCGACCGGTATTCGGGAGATCCACAGAGTGACCAAACCGAGCGCAGAAGTGCGTCTGATCAGGTCACCCAACGGTCTGACAAAAGCTCCGCGGAGCAGTCCGGCGATGAGAGCGACTCCCTACCGGATCTGGACATCCCAAAACTCGAGCCGACGGTGGTCACGGCTGAGCTCGACGGCGGTTCTCACGCGGTCACCGTACCTTCGCTGTGGCAGATGAGGGAGGCTATGAAAACACTGGCCACCGGGTTACTGTACAGAGGATTCTGCGACTTTAAACTCCTTCATCAGTTTGAAAAAGAGGTTGACGCTGTTTTGAGAAGATCAGTGGCCCTAAGAGCGCAAAACGGCTCGCAAGCATAACGACTCTGAGACTTAAGCGTGTTCATGTTGTTATGTAGTGTTTCTTTCAGCTCGATCCTAACGGGACAGGCAGTCCCTCAGATGACCACGCGGCGGCGCCAAGTGTTCGTTATAACACACTTTCCTATGTGTTTCCTGACTACGAAATGTGGTTCCGTTAGGCTATTTGTCAACCCAGTTTATAATTTGCAGCATTAACgtgtattaaattatttgtatgtttttattttagttcaaatgCGTAACCACTGACACGAATGTTTCAATTACTGactttatacaaaaataaaagctttttaaaaaaa

Function

NR:

description
PREDICTED: uncharacterized protein LOC107720189

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239047.1 True 1774 mRNA 0.50 1 17591913 17593686

Neighbor

gene id symbol gene type direction distance location
rasa1a rasa1,rasa1a,LOC107720192,LOC107553923,LOC107669512,LOC107753180,LOC108443998 coding upstream 5561 17554410 ~ 17586352 (+)
LOC122344741 otpb,LOC107720233,LOC107587559,LOC107699682,LOC107682870 coding upstream 214904 17374852 ~ 17377009 (+)
LOC122345919 camsap1,camsap1a,LOC107705949,LOC107675701,LOC107661566 coding upstream 217665 17373273 ~ 17374248 (+)
LOC122345236 sh2d3c,LOC107731039 coding upstream 263499 17319860 ~ 17328414 (+)
LOC122344734 col27a1b,LOC107720245,LOC107672548,LOC107587699,LOC107699687,LOC107731038,LOC107720196,LOC107552608 coding upstream 275644 17260152 ~ 17316269 (+)
polr3g polr3g,LOC107669519,LOC107557435,LOC107756241 coding downstream 302388 17896074 ~ 17899622 (+)
adgrv1 adgrv1,LOC107660972,LOC107669515 coding downstream 313722 17907408 ~ 18012794 (+)
nr2f1a nr2f1a,nr2f1,LOC107671052,LOC107567418,LOC107699709 coding downstream 768187 18361873 ~ 18369522 (+)
slf1 slf1,LOC107703243,LOC107756294 coding downstream 1055079 18648765 ~ 18676675 (+)
fam81b fam81b,LOC107699714,LOC107703202,LOC107587521 coding downstream 1212298 18805984 ~ 18814930 (+)
G37331 LOC107720200,LOC107699749,LOC107756319,LOC107587493,LOC107703272,LOC107567144,LOC108423573 non-coding upstream 234154 17354606 ~ 17357759 (+)
G37333 NA non-coding upstream 238817 17351156 ~ 17353096 (+)
G37330 NA non-coding upstream 240991 17350591 ~ 17350922 (+)
G37308 NA non-coding upstream 701936 16889197 ~ 16889977 (+)
G37291 NA non-coding upstream 764437 16827125 ~ 16827476 (+)
LOC122345748 NA non-coding downstream 182 17593868 ~ 17614996 (+)
G37433 NA non-coding downstream 298265 17891951 ~ 17893273 (+)
G37449 NA non-coding downstream 425644 18019330 ~ 18019601 (+)
G37475 LOC107720216,LOC107575123,LOC107567414,LOC107756269,LOC107720179,LOC107699689 non-coding downstream 444446 18038132 ~ 18044946 (+)
LOC122345897 NA non-coding downstream 511413 18105099 ~ 18120648 (+)
LOC122345691 NA other upstream 64469 17526024 ~ 17527444 (+)
LOC122344991 camsap1b,LOC107587696,LOC107672541,LOC107552625,LOC107720249,LOC107745551 other upstream 219054 17364849 ~ 17372859 (+)
G37228 ncor2,LOC107742750 other upstream 1030172 16486620 ~ 16561741 (+)
G37227 NA other upstream 1031181 16474708 ~ 16560732 (+)
LOC122345998 LOC107718355,LOC107676655,LOC107746825,LOC107680877,LOC107553589,LOC107552586 other upstream 1196351 16391797 ~ 16395562 (+)
arsk arsk,LOC107703223,LOC107720292,LOC107756297 other downstream 1249133 18842819 ~ 18847674 (+)
G37626 LOC107720210 other downstream 1345127 18938813 ~ 18940895 (+)
msh3 msh3,LOC107720281 other downstream 1368636 18962322 ~ 19014100 (+)
nrarpb nrarpb,nrarpa,nrarp,LOC108255347,LOC107595556 other downstream 2113602 19707288 ~ 19710070 (+)
col27a1b col27a1b,col27a1,LOC107699687,LOC107720196,LOC107552608,LOC107731038,LOC107720245,LOC107672548,LOC107587699 other downstream 2373891 19967577 ~ 20035380 (+)

Expression


Co-expression Network