rasa1a (rasa1,rasa1a,LOC107720192,LOC107553923,LOC107669512,LOC107753180,LOC108443998)


Basic Information

Item Value
gene id rasa1a
gene name rasa1,rasa1a,LOC107720192,LOC107553923,LOC107669512,LOC107753180,LOC108443998
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 17554410 ~ 17586352 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239052.1
GAATATGAGGAAATGAGGTTTCATTCGTTCTCTTTGGACTGCGCCGAGTCGATTGCCGAGCTCACTGATGTGAACGCGTCGGTTCGGTGATCTGCTGGCCTGGTCTGCGCATGAGCGGGGACGCGCAGGGAGAGGAGTGGGACTGGGAGCAGCTGTGGCAAATGTTCCACCAGTCCAGCAATCTCGAGAAGAAAAGGCAATTTACGACTGAAGAAAACACTTTAACGCACTCTTTGAGCGGAATCTAGTGAGGGCAAGCGCGTCGGGCGTCCGCGATCACCTGCGAAGCGTCCAAAGTAGCAGATCGGCGCGTTTTCTGAACTCACTGCAAACAAAATAACAGCCCCGAAAGACTGACAATAAAAGCCCACAACTGACACCAGACCGAGCCGGGGCCTCGATACACCGTCCTCTCCTCAACTCGGACGTTTACCCTGCACTACTTTCAGAGAAAAGCCCTTCTTCTCTTTGTGAAACTCAGGAAACAATGAAGACTTAAACTCATGCGTTAGCCGCtgagctgagtgtgtgtgtgtgtgtgagtgagtgtgtgtgtgtgaagagagtgcgctcttctctcttctccagGAAACTTTCTCCCGTGGCTTTAAAAGACTGGAAGCAGAAGAAGCTTTGACAGACTCGGGGAAGAAGCTCAGGCTGTCTTCTTGATTTCTGCATGGAGGTGAGGGGCGAGGACAGGGGATCGGACGGCAGCAGAGGCCCCGACTCGACCCACTTTCCTCTCTACAGCAAACCCTCGCGAGCACGGCTGACGGATCCTGACATGATGATCTACCCCAGCCCTGGAGGAGAGGACCTCACGGGGAGAGCCGCCGCCGCTGCCGGGTGCGAGTCGCCCTCCTCGGATGGGCCGGGCAGCAGCCGGATGTCGCCCACCGACGGGCCCACGGTCTTCCCACCTTTACCGCCACCCCCTCCGCCGTCTGGAATCGGGGCGCAGGGGAGCGTGGATGAAAGTGATCAACAGGATGGGCCAGAAtatgaggaagaggaggttGTTTTCCCCCTTTCAGCGCCGCCCACCAACCAATGGTACCATGGAATGTTGGACAGAACCATTGCAGAAGAGCGATTGCGTCAGGCTAGGACACCGGGCAGCTACCTCATCAGGGAAAGCGACCGCCGGCCTGGCTCCTTCGTACTGTCCTTTCTCAGCGTGACCAATGTGGTCAATCACTTCAGGATCATTGCGATGTGTGGAGATTACTACATCGGTGGACGACGCTTCTCGTCCCTGTCAGACCTCATCGGTTACTACAGCTATGTGTCTTGCCTACTGAAAGGTGAAAAACTGTCGTCTCCAGTGGCTCCCCCAGAGCCAGTAGAGGACAGGCGACGAGTGAGGGCCATACTTCCATACACCAAAGTGCCAGAAACTGATGAAATCAGTTTTCTCAAAGGAGACATTTTTATCGTTCACAATGAACTGGATGATGGTTGGATGTGGGTAACCAATTTACGGACAGAAGAACAGGGCCTTATAGTGGATGATCTTGTGGAGGAGGTGGGACGAGAAGAGGATCCCCATGAGGaaaaatgtaaCTGGTACCACAGAAAGATCAGCAAACAGGAAGCGTACAACTTGCTAATGACAGTTGGTCAGGTCTGCAGCTTTCTGGTCAGGCCGTCGGACAACACACCTGGCGACTACTCCCTCTTCTTTCGTACCAATGAGAACATCCAAAGGTTCAAGATCAGCCCCACTCCCAACAACCAGTACATGATGGGAGGGCGGTACTATAACAGCGTCGACGATATTATTGAACGTTACCGAAAAGAGCAGATCGTGGAGGGCTACACTCTGAAAGATTCTGTCTCAGTCCAGCAAAAAGAGCAAGTCCTCTCCGACTTGGTCGATGGCAGAGAAATCTATAACACTATTCGACGGAAAACAAAAGATGCTTTCTACAAAAACATCGTCAAGAAAGGATATCTTCTCTTCAACAAAGGCAAGGGTAAGCGTTGGAAGCATTTGTACTTCATCCTGGAGGGCAACGACGCTCAGCTCATTTACTTTGAGAGTGAGAAGCGAGCCACCAAACCCAAAGGACTAATAGATCTGAGCGTGTGCTCGGTGTACGGGGTCCACGACAGTCTGTTTGGCAGGCCAAACTGTTTCCAGATTGTGGTTCAGCACTTTAGTGAGGAGcagtacattttttactttgcCGGGGAGACACCTGAGCAGGCACAGGACTGGATGAAATGCCTGCAGACATTCTGCAATAACCTTAGGAAACCCTTACAGACCACATTCAACAAGCGCTTGCGTCAGGTTAGCAGTCTAGTCCTGTATGTGGAGGAGGCCCACAAACTTCCCATCAAACACTTCACCAACCCTTACTGCACCATCTCGCTGAACAGTGTGCAGGTGGCGAAGACTCATCCTAGAGAGGGACAGAACCCCGTGTTCACGGAGGAGTTCATCTTCGATGACTTGTCGAGCGAAATCAACAGATTTGAAATAAGCTTAAgcaacaagaccaagaagagcaaAGAAAGTGACATCTTGTTCATGCGTTGCCAGCTGAGCAAGCTGCAGAGGGGCCAGATGATCGATGAGTGGTTTCCTCTGAGCTCCTATGTGCCGCTCAAGGGAATTGAGCCAGGCTCACTCCGCGTAAGAGTGCGATACTCTATGGAGAAGATCATGTCTGAGGAAGAGTACAGTGAATTCAAAGAGCTCATCCTGCAGAGAGACTATCACGTGATCTATGCGTTGGCTCACGTTTGCGGACAGGACCGCACCCTGCTGGCCAGCATCCTGCTCCGTATCTTGAGACACGAGCGAGCCGAAGCGCCTTTACTGAGAACCTTGAATGACAGAGAAATTAATATGGAGGATGAAGCCACGACACTGTTTCGGGCCACTACTCTGGCCAGTACTTTGATGGAGCAGTACATGAAGGCCACAGCCACTCCTTTCGTCCATCACGCCCTCAAAGACACCATACTGAAGATCATGGAGAGCAAGCAGTCCTGCGAGCTGAACCCGTCTAAACTGGAGAAGAATGAGGATGTTAACCTGAATCTAGCTCACTTACTCAACATCCTGTCGGAGCTGGTGGAGAAGATATTTATGGCTGCTGAGATCTTGCCCCCGACCCTGAGATACATTTATGGCTGTCTTCAGAAGTCCGTTCAGCAGAAATGGCCTACCAACACTACAATGAGAACCAGAGTTGTGAgTGGTTTTGTCTTCCTAAGGCTCATCTGCCCTGCCATTCTCAACCCCAGAATGTTCAACATCATTGCTGACCCTCCGTCCTCCACAGCAGGTCGAACGCTCACCCTGGTAGCAAAGTCTGTGCAGAACTTGGCCAACCTGGTGGAATTCGGTGCAAAGGAGCCCTACATGGAGGGGGTGAATCCTTTCATCAAGAACAACAAACAAAGGATGATCATGTTTCTGGATGAGCTGGGGAATGTTCCTGATCTCCCGGAATCTACCGAGCACTTTAGGGCTGATTTGTCCCGTGACCTTGCTGCCCTGCATGAGATCTGTGCTACTCATTCTAGCGAACTCCGCACCCTCAGCAATGAGAGAGGAGCACAGCAGCACGTGCTAAAAAAGCTGCTGGCCATCACTGAGCTCCTCCAGCAGAAACAGGCGCATTATGCCTTGTCCAACAGCATCAGGTAGTTCCTCCTCAGTCATTTTGTCTGTCAGTTTGTCTCCGTCTCCATGGAGTAGCCAATGGGACCCAGCATGCTCCACCCTCATCCCCATGCCAGCTCCCAACCTCCCCATATCTTCCATCCTCCCTCTTCCTCCGCCTCATTGTCTGTGCCACGAGAACTATGCAAACTACAGCAGATAACAAAACAGCTGGACTCCCAAGTCCAACACCAATGACTTTATAATCACACGACCAGATCGTTCGGTTTGACTGCTCTCCGTGTCTTGGGTACATATCAATCTAACAGACGGGTCGAATGAATGACCCACTAAGTCGACAgaatgatgtttttaaaatacaggtTGCCAAAGTGTATCTCTTCATCTGCTTGATCTGAAACTGAACTGACACAAGGCTGCAACGATTCTTCTCTATAACTGGATTATGagctaaaatgctttttatactgtaatttgTTACTGATTTACATGGCTATGAATATGCAAAATGTGCTCAGACTAGTGTTTTGTCCTTTTCCCTGTTCCATTTAGTTCGATTTGTGCTGTAGactggattttgtttttctttttatcatccTCAGAGagtatgattattttatatcaaaacaataaattcTCTTGCTGGAATCATGAGTATATAATTTGAGGTAACCTGATTTGTTTTCCATATGTTTGATTGGTTCAGTCTTCCCTGAGACAAATTCAAAGCCAGACTCGTTCTCAGGAGAAATGTTtaacgtaaaaaaaacaaacaaaaaatgtttacagcagTAAAATTTATAATAGTAAAGATTGTATCAGGAATGCATGCACTTATTAAACGTGTTTTATAAAGTACTGACTGTCTCAGATCAGCTCGTGAAAACAGCTTTTGGAAATAACAAGACGGCTGTTGTGCTCCTCTAAAACTATTCTAGTGTTTGTCTATGTTTTCAGTTCTTGATTTTGAATAAAGAACCATTATTATGGTTATCAACAGCA

Function

symbol description
rasa1a Predicted to enable GTPase activator activity. Acts upstream of or within blood vessel development and ephrin receptor signaling pathway. Is expressed in head. Human ortholog(s) of this gene implicated in arteriovenous malformation and basal cell carcinoma. Orthologous to human RASA1 (RAS p21 protein activator 1).
rasa1 Enables several functions, including GTPase activator activity; GTPase binding activity; and phosphotyrosine residue binding activity. Involved in several processes, including blood vessel morphogenesis; negative regulation of cell-matrix adhesion; and regulation of actin filament polymerization. Predicted to be located in cytosol. Implicated in arteriovenous malformation and basal cell carcinoma.

NR:

description
PREDICTED: ras GTPase-activating protein 1

GO: NA

KEGG:

id description
K04352 RASA1, RASGAP; Ras GTPase-activating protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239052.1 True 4645 mRNA 0.49 25 17554410 17586352

Neighbor

gene id symbol gene type direction distance location
LOC122344741 otpb,LOC107720233,LOC107587559,LOC107699682,LOC107682870 coding upstream 177401 17374852 ~ 17377009 (+)
LOC122345919 camsap1,camsap1a,LOC107705949,LOC107675701,LOC107661566 coding upstream 180162 17373273 ~ 17374248 (+)
LOC122345236 sh2d3c,LOC107731039 coding upstream 225996 17319860 ~ 17328414 (+)
LOC122344734 col27a1b,LOC107720245,LOC107672548,LOC107587699,LOC107699687,LOC107731038,LOC107720196,LOC107552608 coding upstream 238141 17260152 ~ 17316269 (+)
LOC122344732 LOC107570126,LOC107742021,LOC107694705,LOC107675326,LOC107715436,LOC107574130 coding upstream 300511 17229394 ~ 17253899 (+)
LOC122345176 LOC107720189,LOC107660966 coding downstream 5561 17591913 ~ 17593686 (+)
polr3g polr3g,LOC107669519,LOC107557435,LOC107756241 coding downstream 309722 17896074 ~ 17899622 (+)
adgrv1 adgrv1,LOC107660972,LOC107669515 coding downstream 321056 17907408 ~ 18012794 (+)
nr2f1a nr2f1a,nr2f1,LOC107671052,LOC107567418,LOC107699709 coding downstream 775521 18361873 ~ 18369522 (+)
slf1 slf1,LOC107703243,LOC107756294 coding downstream 1062413 18648765 ~ 18676675 (+)
G37331 LOC107720200,LOC107699749,LOC107756319,LOC107587493,LOC107703272,LOC107567144,LOC108423573 non-coding upstream 196651 17354606 ~ 17357759 (+)
G37333 NA non-coding upstream 201314 17351156 ~ 17353096 (+)
G37330 NA non-coding upstream 203488 17350591 ~ 17350922 (+)
G37308 NA non-coding upstream 664433 16889197 ~ 16889977 (+)
G37291 NA non-coding upstream 726934 16827125 ~ 16827476 (+)
LOC122345748 NA non-coding downstream 7516 17593868 ~ 17614996 (+)
G37433 NA non-coding downstream 305599 17891951 ~ 17893273 (+)
G37449 NA non-coding downstream 432978 18019330 ~ 18019601 (+)
G37475 LOC107720216,LOC107575123,LOC107567414,LOC107756269,LOC107720179,LOC107699689 non-coding downstream 451780 18038132 ~ 18044946 (+)
LOC122345897 NA non-coding downstream 518747 18105099 ~ 18120648 (+)
LOC122345691 NA other upstream 26966 17526024 ~ 17527444 (+)
LOC122344991 camsap1b,LOC107587696,LOC107672541,LOC107552625,LOC107720249,LOC107745551 other upstream 181551 17364849 ~ 17372859 (+)
G37228 ncor2,LOC107742750 other upstream 992669 16486620 ~ 16561741 (+)
G37227 NA other upstream 993678 16474708 ~ 16560732 (+)
LOC122345998 LOC107718355,LOC107676655,LOC107746825,LOC107680877,LOC107553589,LOC107552586 other upstream 1158848 16391797 ~ 16395562 (+)
arsk arsk,LOC107703223,LOC107720292,LOC107756297 other downstream 1256467 18842819 ~ 18847674 (+)
G37626 LOC107720210 other downstream 1352461 18938813 ~ 18940895 (+)
msh3 msh3,LOC107720281 other downstream 1375970 18962322 ~ 19014100 (+)
nrarpb nrarpb,nrarpa,nrarp,LOC108255347,LOC107595556 other downstream 2120936 19707288 ~ 19710070 (+)
col27a1b col27a1b,col27a1,LOC107699687,LOC107720196,LOC107552608,LOC107731038,LOC107720245,LOC107672548,LOC107587699 other downstream 2381225 19967577 ~ 20035380 (+)

Expression


Co-expression Network