LOC122345200


Basic Information

Item Value
gene id LOC122345200
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 14089145 ~ 14094042 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239095.1
TTTCAAATAATCATGTCGTGAATATCCAGGACTTTCCGGAGCGCAGCTGTGGGTTTccttgaatgcaatgatgttGCTTTCTCATTCCCACTCAGAACAGGTCGACAGAACAGCAGAGGCATTTACAGTGAGGATTTTCAAACAATATCAAACGTATACGATGAAACGTACTAGAAGAACCAGGAAAAAACCTGTGAAAAAAGGAGGTATAAACACAAACGAGGAAGAGCTAATAAGCGTGAGACCGACGGTTATACGGTGGAATAGAAGAGGACAGACGACAGTGATATCtgAAAATGTACAAGTGTATGATCTGACCGACGATCTCAGCGAGGAGGAAAATATTCTAGAGGTGCCATCTCCGCCATCTCGAACTGAATCAATAATGAATAACAAATCTATAAGCAATTTTGGAACCCAGGAAGATGAAAACAAACTATATCCCACAAACACATGCCCGGTTTGTTTCTCTGCACTTAAAGCCGCATGTATAAAGGGTACTACTGGACTGCTTCAGTGCACTCGATGCCCGAGCACTCAGCTCCTGTGCGGCTCCTGCCTTTACCCCACGACCTCAGCCGCCTGCACCAACAAGCTGTGCCCCCTCGTCTCCACACTGCTAACCTGCGACTTGGTATCAGATTCAAAGAGCAAAGTGTACGGTTGTCCAACGTTCAGAGCCTGTCCCAAATGTCACAATCTGATTATGCATGAAAAAGGATGCAAGTTTGTAACATGCAGATCATGCCTTCACCGGTTTTGTTTCATCTGCTTGCAAGGTGATTGTAGCAAAGATAAAGAAAAGTACTGGAATCTTTTTTGCAAAAATCCAAGAGCAAAAAGACAGAGATTTATGTCACCACAATCCTAAACAGAGATCCTTCACACTGGATAATATTGTCTAAGATCCAAATGATTAAAAGATTTGttaatatagaatatagatGCTATATAGAAGCAAACAGTAACAAAATTCATTTCACAAACTAATTtaatctgcaaaacaaaaataacattgcaTTGAGCCCATTTTTCCTCTGTGCTTTGAATCTATGCTGTGCCATATACCTAAGATGAACTTTAGTTAGCAGGTCTTCTATATTACTTGCCTTTTTCCCCTTGCAGTTgtagtgtttttctttatttcatttattatgtttgtgtGGTTTGAGGGGTCTTCACAAGTTAGAAATGGAGAGAATGTCtccattttaaagattttgatGGTTGGTATAACACTTGTTGATTTGTGAAGATCAAGTACAAAAGGGTTCAAGTTCAGATTAATCCTGAGCACCATAACACAGATGGCTAAAGGCTGGAAGACActacatgacttttaaaatttgaacagattttaaaatgctagGCATCATACATTTTTCCAACTTTGTAAATAGTCTAATGAACTACATGTTTCTACATGAAGTCTTGTAAGATATTCCAGACcttagaaatattatataaaatttgctattttttttccatca
>XM_043239096.1
ttaattcacaaaGACACAGAAAATTTCAAATAATCATGTCGTGAATATCCAGGACTTTCCGGAGCGCAGCTGTGGGTTTccttgaatgcaatgatgttGCTTTCTCATTCCCACTCAGAACAGGTCGACAGAACAGCAGAGGCATTTACAGTGAGGATTTTCAAACAATATCAAACGTATACGATGAAACGTACTAGAAGAACCAGGAAAAAACCTGTGAAAAAAGGAGGTATAAACACAAACGAGGAAGAGCTAATAAGCGTGAGACCGACGGTTATACGGTGGAATAGAAGAGGACAGACGACAGTGATATCtgAAAATGTACAAGTGTATGATCTGACCGACGATCTCAGCGAGGAGGAAAATATTCTAGAGGTGCCATCTCCGCCATCTCGAACTGAATCAATAATGAATAACAAATCTATAAGCAATTTTGGAACCCAGGAAGATGAAAACAAACTATATCCCACAAACACAGGGGTCGATTCTTCAAGCGAAGCCTGAGCGCATGCGCCTCCGTGAGGGTTCCCACAGACCGATCCTCGCTGGAATACATCAGTTTCCTTGGGTCCACGTACCTCATAAACATGTTGCGAGTCCACAGAAGGCTCGGTTT

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0046980 tapasin binding molecular_function

KEGG:

id description
ko04612 Antigen processing and presentation
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239095.1 True 1490 mRNA 0.39 4 14091966 14094019
XM_043239096.1 False 616 mRNA 0.44 4 14089145 14094042

Neighbor

gene id symbol gene type direction distance location
si:ch211-284e13.4 si:ch211-284e13.4,LOC107599204,LOC107663370,LOC107746440,LOC107734146,LOC107661201,LOC107596113 coding downstream 2667 14064549 ~ 14086478 (-)
mpzl2b LOC107599229,LOC107746390,LOC107663371,LOC107596204,LOC107661261,LOC107734129 coding downstream 56559 14028417 ~ 14032586 (-)
scn4bb scn4bb,LOC107746389,LOC107599210,LOC107663372,LOC107661197,LOC107734128,LOC107596119 coding downstream 64593 14014414 ~ 14024552 (-)
fxyd2 NA coding downstream 87070 14000559 ~ 14002075 (-)
arhgap35b arhgap35,LOC107746386,LOC107596120,LOC107734134,LOC107663410,LOC108437035 coding downstream 88889 13987489 ~ 14000256 (-)
si:ch211-284e13.6 LOC107746420,LOC107663368,LOC107599222,LOC107734114,LOC107596187 coding upstream 536 14094578 ~ 14099813 (-)
gucy2d gc3,LOC107599205,LOC107661246,LOC107734113 coding upstream 6450 14100492 ~ 14112076 (-)
slc12a9 LOC107746400,LOC107599203,LOC107663403,LOC107661204,LOC107734138 coding upstream 36756 14130798 ~ 14140051 (-)
LOC122345196 LOC107663404,LOC107599202,LOC107746401,LOC107734151,LOC107661205 coding upstream 46200 14140242 ~ 14143791 (-)
mink1 mink1,LOC107746403,LOC107596107 coding upstream 62481 14156523 ~ 14190472 (-)
G36385 LOC107596209,LOC107734118,LOC107661259 non-coding downstream 112075 13975352 ~ 13977070 (-)
G36337 NA non-coding downstream 269811 13818248 ~ 13819334 (-)
G36297 NA non-coding downstream 375725 13712680 ~ 13713420 (-)
G36224 LOC107700249,LOC107746377,LOC107548465,LOC107710575,LOC105912484,LOC105027847,LOC106603104,LOC106563440 non-coding downstream 377186 13708100 ~ 13711959 (-)
G36279 NA non-coding downstream 451822 13633670 ~ 13637323 (-)
G36541 NA non-coding upstream 182054 14276096 ~ 14310067 (-)
G36561 NA non-coding upstream 216582 14310624 ~ 14310860 (-)
G36562 NA non-coding upstream 216920 14310962 ~ 14311328 (-)
G36537 NA non-coding upstream 217726 14311768 ~ 14320994 (-)
G36567 NA non-coding upstream 255066 14349108 ~ 14349936 (-)
rnf214 LOC107663407,LOC107746393,LOC107599207,LOC107596114,LOC107734124,LOC107661199,LOC107599223 other downstream 32440 14040982 ~ 14056705 (-)
tmprss13b LOC107746439,LOC107663381,LOC107599230 other downstream 79609 14001934 ~ 14009536 (-)
LOC122345901 NA other downstream 241075 13845403 ~ 13848070 (-)
G36336 NA other downstream 270203 13817742 ~ 13818942 (-)
G36298 NA other downstream 370602 13717124 ~ 13718543 (-)
znhit1 znhit1,LOC107752359,LOC107661214,LOC106567874 other upstream 185632 14279674 ~ 14282620 (-)
LOC122345141 LOC107752369,LOC107661250,LOC107567461 other upstream 198021 14292063 ~ 14302381 (-)
pdzd2 pdzd2,LOC107746802,LOC107681406,LOC107661237 other upstream 1111909 15205951 ~ 15264945 (-)
zfr zfr,LOC107746805,LOC107681158,LOC107552600,LOC107602019 other upstream 1199814 15293856 ~ 15308440 (-)
npr3 LOC107681138,LOC107746807,LOC107552598,LOC107602007,LOC107708637,LOC107661273 other upstream 1255974 15350016 ~ 15367413 (-)

Expression


Co-expression Network