spns2 (spns2,LOC107677434,LOC107597455,LOC107722776,LOC107587355,LOC106602867)


Basic Information

Item Value
gene id spns2
gene name spns2,LOC107677434,LOC107597455,LOC107722776,LOC107587355,LOC106602867
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 8025740 ~ 8090672 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239151.1
CAGAGCGAGAGAAAAGCGCTTCCCGAGCGCTCGATCCTGTCACTGCACAGACATGAACCGAGCTCAGCGAGCAATAATCAGATCGACGATTTGCATTCTTTGCGATTAACACTTAGTTTTTCCTCCATCGCTCAAAGGCGCCGCACTTTTCCGTCCCGACCGTCCTGTCTCCGTTCAGAAATCGTTCAATCGTTTGCGCTGGATCTGTCGTGCCAGAAGATGTGCGTGGAAAGCGATGGATGTGAGATCGAGGGGTGCAGCAGTTCGGATGAGGTGCACACGCTGTCTGGAAGCATGAGCCCGACTCTTAAATCCAGCCCGGACCTGCATCCCTGCAAACCTGGGCAGAAATTCCGTGCCGCATTGCTCCGATGCCGGTCTCCGCTCGTTGCCGCCGGGATTCTGAGTTTTggaaatgtgcttaattacatGGACAGATACACCGTGGCAGGTGTTCTCCTTGACATACAGAAACACTTCGAGGTTGGTGACAGCGGAGCAGGCTTGTTGCAAACAGTTTTCATCTGCAGCTTCATGATTGCTGCACCTATTTTTGGTTACCTGGGGGACCGATTCAACCGAAAGATCATTCTGAGCTGTGGAATCTTCTTCTGGTCAATTGTGACACTGCTAAGCTCCTTTATTACCAAAGATTATTATTGGTTGTTAGTGTTGTCCAGATGCTTGGTGGGAATTGGAGAATCAAGCTACTCGTCCATCTCTCCAACCATCATTGGAGACCTGTTCACAAACAACAAAAGGACCGTAATGCTCTCTGTCTTCTACTTGGCCATCCCATTGGGAAGCGGTCTGGGCTACATCCTGGGATCCATCGCTAAAGATGCTGGAGGGCACTGGTACTGGGCTCTGAGGGTTTCTCCGATGTTGGGGTTGACTGCCGGGACCCTCATTTTCATCTTTGTCCCTGAGCCAAAGAGAGGGAGTGCTGACCATATCGCTGGACGTATAAAGACACGCACTTCCTGGCTCTGTGACATGAAAGCTCTTGCCAAAAACCGCAGTTATGTATTTTCATCTCTGGCATCCGCGGCCGTGTCATTTGCCACGGGGGCGTTTGGGATTTGGATCCCACAGTACCTGGTCAGAGCTCAGGTGGTGCAGAAAACAGCAGTGAGCTGCACCTTTCAACCATGCAGCAGCAAAGACAGTTTGATATTCGGAGCCATCACCTGTGTGACGGGGCTGTTGGGAGTGGTGATCGGTGCCGTGACCACACGCCTCTGCCGTCAGAAGACGGAGCGTGCAGACCCGCTGGTGTGTGCGGTCAGCATGCTGGGCTCTGCTATCTTCATCTGCCTCATCTTTGTTGTGGCCAAGAAGAGCATTGTGGGAGCGTATATCTGCATTTTCATCGGAGAGACGCTGCTCTTTTTGAACTGGGCCATTACGGCGGACATTTTAATGTATGTTGTCATACCGACCAGAAGAGCCACTGCTGTTGCCTTCCAGGGCTTCACCTCACATTTACTAGGGGATGCTGGGAGCCCGTACCTCATTGGCTTGATATCAGACGCACTGCAGGAGAGCTACGCTACGTCAGCGTTATGGCAGTTCCTGAGCTTGGGCTATGCCCTCATGCTCTGCCCCTTTGTCATCGTTTTGGGGGGGATGTTCTTCCTGGCCACCGCCCTTTTCTTCCTGGACGATCGCGACAAAGCGGAGAAACAggtaaACCAGCTTTCCCGGCCGCCATCCACAGTTAAGGTTACCAAATGAGAAGGGGTTGCTGCAATGGGATGGAAAAGTGGGCAAgtggaggaagaaaaaaacaacagaaggaATAAAACTAGCAGCTAACTCGCTATACGCACACTCTACACACTCTCGGATCGCCGCTGTCATATCATCTCTGCTTTTTCGTTTCATCCTGTGAAGGCCGTTCTGAATTCGAGTCGCACCTTGCTCGCCCTAGCAAACCTTCAGCTGGGAAGAGGTCAGCCAATCAGCAACTGGAGCGCAGCTGTCAATGATGTATATAGAGAGCAGCATTGGCTCCAATGGGTGTTTGGAAGAGGGTGCGCTAGAGCGCTCAGTGCCATACTACTGAACACAGCACGGACACACGCTCCCGTCCTGTCACGCTGCCTGTCGATCTGCACCAAGTGCCATAGCATCACATTCCGAATAGGGACCAGCACCGGAGATGCTCACAGCCAACAGGGGGCTCGCCAAAACACCGAAATCCTGtaaaaacagaactgaaaaacaaactacACGGTGAGCCCTGCCTTAAGAAATCTGGCAGAGGCGCAGGTCTGGTCCCTGGTCACTTTTCTTTCGTAAAGATCTTTTTCTTTGCttattattacatgtattttcCATTCTTTTTCTTAGCACTTACCATTTTAATGCAGTGCCAGTGAAATCATGCAGTCACGCATGACACCTGAGATCATTGAAATCGATCATTAtcttttctcttcttcctctgactgtgtgtttttacaaatgaaacTGGAGGGACTTCATAAACTATAGCCGAAAGGGACACTGGATTGtaaatattatctttttataatGAAGAAACAACATGTAAATGCTTTCATACTGAACTTTACTGAAAGAGCCCGCCAGGATGAGTCTCGTAGCGCGTCCAAGAGGAGAGCAGAAATACTGAAAAACGTTAACAAGCGAATAAAGCCAAGGTTATCGTCACTTGTTTAGGGAGGAATTCCTTCCGCAGTGCCGGGTTACCCACCCAGACAGGCAAACCTTCATTTTAAGTGCGGATAAGATTCACAGGATCAGTCTGTAAGAATGAAAGTCTTTGTATGTTGGCTTACCTTGCTCATTTGGTTTTACATATCCCTTTACTGGAAAAGAAGAGACAGAAAGGATGATAGTGTATCGCAGCCAAGTTAATTACCTACACTGCAATCCATCCGCTTTCAAAAAGGGAATTTTAACTCAGAGGTTAAGCTAAgtctaagtttttttttttttttgtggattctGTGAATTTTGTGGAAGTTTTTCATTGCATACACTAAGAAAAGCACTTTGCTTTTCACTGAGTAGTCATGGATGTGAAGAGATAAAGTTGGGAGGGTAAAACTGCAGAAAATATCCTTTTTCGCTCTTATTGGCCTGTGTGGTTTCGCTTCAGATAATAGTTTGTaatatatgcaatttaaaaaaaaaaagaagatttcaTCATTAACAAACGTGAAAGCTTTGACAGTGGCAATAATTTGTATATCTTCATATTTAGCAAGATTTTCTCAGAGCACACATACTCACCACTGTCACTTTTTTTGCAACCTGGCGTTACCAAATCTGTCCGTCTGAAGCTGTTCAAATGTAAATCTGTTCTCTAAGAGAAGGCTTTTTCCCCATCTTGAAAAAAGCACCTTGCCTATAGATTGATGTGGAAAAAGCTGATCTGTGTTTTGAAGGTCTGACTTAACGTATCATGTGAAATTACTGTTCCTATTTGCCAGTCATATCCTTTTACCTTTCATCATGCCAGGTGAAAAGCCTTTGAATGTGATTCTGTCCAATCCAATGTGTTTACACATGCCAATTTATCTTAATGAagcttttgtattattattattattattattattcttttacagatgtcgttttctttctttttacaaatatgaGTTTTATATATAGACACTATAAAGATAAACTATATTATGcagcaattttaatatattgtaaactgCTTTGatgcaatgtatttattacgtttttaatttgtttatttactacCCTTGCTGATAAGATGgaataaggggaaaaaaattatgtcaTAGATATTATGTACAGTTccgtttttgatttattttagtttaaaaaaaaaaaaaaacacctcctCGTCACCATTTGAAGAATTTCTCAGTTGTTCATCTCAGAGAACTGTGTTTTCACAGGAGCCGATTATTTTACTGATTCACAAAGAGCATGATTTACACTTATACGAAAGTACATGTATTGTGTATTAACATGTTTATTAGACCAATGAACCGATACTTTACCTGATTTGTTTTGCACAAGCAACTGGGTGTGTGAATAATTTGCTGATCAGGGGGTTTTCTCTTACTGTCTAATTCAATAGTTCTACACTGGCATTTTGTAAGTGCTAGCTTTGAGGGATTATTACCCATTCACTGCCTGGCTACTAGCTTTTCAAAGTTATTTTATGTGCTGTCAATGATTATATGactattgtttatttgtttgttgaaaGGCAACGCTCACGGTGATCTTGGTCAGATGAACAACTGGCTTGATATTTGTAAGGCCAAGTTCATTTTATTGACAAAACGCTACTGCTAATAAGCAGTTTTATGAGATCATTTTAATTGCTGAATCGTGAGAGTTGAGTATTTCAGATTGCACATTTTCTTGTCATACAAGAATTCTGTAAAGATTAACCTATTTCTGATGTCAAGCAGAAATTAAaaggtgattttattttttagagcaAGTGtgattataaagaaaaatatctaGGACGTTTACTGTGATGCTCCCACAGGGATATACACCTATATGTAACTGatcaaaataaacttatttaatcaaaa

Function

symbol description
spns2 Predicted to enable transmembrane transporter activity. Acts upstream of or within several processes, including branching involved in blood vessel morphogenesis; embryonic organ development; and sphingosine-1-phosphate receptor signaling pathway. Predicted to be located in endosome membrane and plasma membrane. Predicted to be integral component of membrane. Is expressed in several structures, including blastodisc; cardiovascular system; intermediate cell mass of mesoderm; tail bud; and yolk. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 115. Orthologous to human SPNS2 (sphingolipid transporter 2).

NR:

description
PREDICTED: protein spinster homolog 2 isoform X1

GO:

id name namespace
GO:0003376 sphingosine-1-phosphate receptor signaling pathway biological_process
GO:0055085 transmembrane transport biological_process
GO:0001569 branching involved in blood vessel morphogenesis biological_process
GO:0061035 regulation of cartilage development biological_process
GO:0006869 lipid transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K23677 SPNS; MFS transporter, Spinster family, sphingosine-1-phosphate transporter

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239151.1 True 4559 mRNA 0.43 13 8025740 8090672

Neighbor

gene id symbol gene type direction distance location
LOC122344894 cyb5d2,LOC107664515,LOC107712371,LOC107597422,LOC107664398 coding upstream 49102 7975083 ~ 7976638 (+)
sh3glb2b sh3glb2b,LOC107748508,LOC107681863,LOC107664415,LOC107597332 coding upstream 322569 7683732 ~ 7703171 (+)
pip5kl1 pip5kl1,LOC107598405,LOC107681849,LOC107712381,LOC107587371,LOC107664401,LOC107748514 coding upstream 342456 7676059 ~ 7683284 (+)
fam102ab fam102a,fam102ab,LOC107681850,LOC107748511,LOC107664417 coding upstream 353286 7643129 ~ 7672454 (+)
pkn3 LOC107681845,LOC107737478,LOC107587363,LOC107597294,LOC107712357,LOC107664395 coding upstream 411852 7599502 ~ 7613888 (+)
ftr82 LOC107712362,LOC107664526,LOC107597500,LOC107677429,LOC107587354,LOC107722781 coding downstream 29517 8120189 ~ 8126047 (+)
ift22 ift22,LOC107597505,LOC107712360,LOC107664522,LOC107677430,LOC107722786,LOC107587352 coding downstream 36991 8127663 ~ 8128952 (+)
tcnba tcnl coding downstream 66218 8156890 ~ 8158237 (+)
tcnbb NA coding downstream 69235 8159907 ~ 8161393 (+)
c2cd2l LOC107717878,LOC107597552,LOC107722772,LOC107677417,LOC107587343 coding downstream 85630 8176302 ~ 8202258 (+)
G34116 NA non-coding upstream 29582 7993152 ~ 7996158 (+)
G34104 NA non-coding upstream 91041 7865167 ~ 7934699 (+)
LOC122345061 NA non-coding upstream 94392 7912092 ~ 7931348 (+)
G34075 LOC107664520,LOC107748505,LOC107597375,LOC107712354,LOC107664410 non-coding upstream 244816 7717973 ~ 7780924 (+)
LOC122345618 NA non-coding upstream 299917 7713614 ~ 7725823 (+)
G34163 NA non-coding downstream 38433 8129105 ~ 8131150 (+)
G34358 NA non-coding downstream 337811 8428483 ~ 8431274 (+)
G34383 NA non-coding downstream 356126 8446798 ~ 8447021 (+)
G34384 NA non-coding downstream 357180 8447852 ~ 8448278 (+)
G34387 NA non-coding downstream 366116 8456788 ~ 8460239 (+)
spns3 spns3,LOC107597443,LOC107712368,LOC107664514,LOC107677447,LOC107722774,LOC107587440 other upstream 15141 8001578 ~ 8010599 (+)
p2rx1 p2rx1,LOC107598068,LOC107712377,LOC107664512,LOC107587372 other upstream 227772 7754074 ~ 7797968 (+)
dpm2 dpm2,LOC107664400,LOC107712384,LOC107681851,LOC107598396,LOC107587395 other upstream 351104 7672827 ~ 7674636 (+)
tmem119b LOC107681861,LOC107597286,LOC107587378,LOC107735096 other upstream 428220 7592963 ~ 7597520 (+)
svopb LOC107723362,LOC107681854,LOC107598053 other upstream 458477 7558940 ~ 7567263 (+)
snx19a snx19a,LOC107597619,LOC107681657 other downstream 199048 8289720 ~ 8305446 (+)
man1b1b man1b1b,man1b1,LOC107709694,LOC107681241,LOC107560236,LOC107757969,LOC107690671,LOC107587425 other downstream 773530 8864202 ~ 8871518 (+)
si:ch211-102c2.4 NA other downstream 1705709 9796381 ~ 9799358 (+)
fam219ab fam219ab,LOC107744421,LOC107595023,LOC107673386,LOC107752501,LOC107672754,LOC107592322,LOC107673387,LOC107595025,LOC107744422,LOC107592323 other downstream 1973545 10064217 ~ 10139733 (+)
osbp2b si:ch211-106a19.1,LOC107687692,LOC107744438,LOC107726355,LOC107672777,LOC107592367 other downstream 2626859 10717531 ~ 10736059 (+)

Expression


Co-expression Network