LOC122345300 (vcp,LOC107681079,LOC107708640,LOC103357444)


Basic Information

Item Value
gene id LOC122345300
gene name vcp,LOC107681079,LOC107708640,LOC103357444
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 15463434 ~ 15471417 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239299.1
TTTTCCCCGCAGAGTTGATGTTAGCAGGCTAATCCAGTGCAGAGGTAAAAAAGCTAGTGTGAAGGTTGGAATCGGTCACTCTAGCGAGCTACTCATTTCCAtcaactatttatatattttctcgGGAGAAGCAATATGGCTTCGGGTGGAGAATCCAAAAATGATGATCTTTCCACTGCCATTCTGAAGCAGAAGAACAGGCCAAATAGGCTGATCGTTGATGAATCCATCAATGAGGACAACAGtgttgtgtctctctctcagGCAAAGATGGATGAGCTCCAGCTCTTTAGGGGGGACACAGTGCTGTTGAAGGGTAAGAAGAGGAGGGAGACCGTTTGCATCGTCCTGTCTGACGACACCTGCTCTGACGAAAAGGTtcgcatgaacagggtggtccGAAACAACCTCAGGGTGCGCCTTGGTGATGTCATCAGTATTCAGCCATGTCCAGATGTGAAGTATGGAAAGCGCATTCATGTTCTGCCAATCGATGACACAGTGGAGGGCATCACTGGCAACCTGTTTGAGGTCTATCTTAAGCCTTACTTCTTGGAGGCTTACCGACCAATCCGAAAAGGTGATATTTTCCTGGTCCGAGGAGGCATGCGCGCTGTGGAGTTCAAAGTGGTGGAAACTGATCCCAGCCCATACTGTATTGTGGCCCCAGACACAGTCATCCACTGTGAGGGGGAACCCATCAAGAGAGAGGATGAGGAAGAGTCTCTGAATGAGGTGGGTTATGATGACATTGGAGGGGTAAGGAAACAGCTCGCCCAAATCAAAGAAATGGTGGAGCTACCTCTGAGACACCCAGCTCTCTTCAAGGCTATTGGAGTGAAGCCTCCCCGTGGCATTCTGCTGTATGGACCCCCTGGAACTGGAAAGACTCTCATCGCTCGTGCTGTGGCAAATGAAACTGGAGCATTCTTCTTCCTCATCAATGGACCTGAGATCATGAGTAAACTGGCAGGAGAATCTGAGAGCAATTTGCGAAAGGCTTTTGAGGAAGCAGAGAAGAACGCACCAGCCATCATCTTTATTGATGAACTTGATGCCATTGCACCAAAAAGAGAGAAGACTCACGGTGAAGTGGAAAGGCGCATTGTGTCTCAGCTTCTCACTCTGATGGACGGACTGAAGCAAAGGGCTCATGTCATTGTCATGGCAGCCACTAATAGACCCAACAGCATTGACCCAGCTCTCAGGCGATTTGGACGCTTTGACAGAGAGGTGGACATCGGCATTCCAGATGCTACTGGAAGACTTGAGATACTTCAGATCCATACCAAGAACATGAAGCTTGCAGATGATGTTGATCTGGAGCAGGTTGCAAATGAGACCCATGGTCATGTGGGAGCTGATCTGGCTGCACTTTGCTCCGAGGCTGCACTGCAAGCCATTCGAAAGAAAATGGACCTCATTGATCTGGAGGATGAGACCATTGATGCAGAGGTTATGAACTCCCTGGCTGTAACAATGGATGACTTCAGGTGGGCTCTTAGCCAGAGCAACCCATCTGCCCTGAGAGAGACAGTTGTGGAGGTTCCCAACATCACCTGGGAGGATATCGGTGGCCTTGACGATGTGAAGAGAGAGCTACAGGAGCTGGTGCAGTACCCAGTGGAACATCCAGACAAATTCCTTAAGTTTGGCATGACCCCATCCAAGGGTGTGCTGTTCTACGGACCACCAGGTTGTGGTAAAACCCTGCTGGCCAAGGCCATTGCCAATGAGTGCCAGGCCAACTTCATCTCAATCAAGGGCCCAGAACTGCTCACCATGTGGTTTGGAGAATCAGAGGCTAATGTCCGTGAGATCTTTGACAAGGCTCGTCAAGCTGCTCCTTGTGTGCTCTTCTTTGATGAGTTGGACTCCATTGCTAAGGCTCGTGGTGGAAATGTTGGCGACGGTGGTGGCGCTGCTGACAGAGTCATTAACCAGATTCTCACAGAAATGGATGGTATGTCCAGCAAGAAGAACGTCTTCATCATTGGGGCCACCAACAGACCAGACATCATTGATCCTGCCATCCTCAGGCCTGGCCGACTGGACCAGCTTATCTACATCCCACTGCCTGATGAGAAGTCTCGCATTGCCATTCTCAAAGCTAATCTCAGGAAGTCTCCAATCTCAAAGgacgTGGACCTGGACTTCTTGGCCAAGATGACCAATGGCTTTTCCGGTGCTGACTTGACTGAGATCTGTCAGAGAGCCTGTAAACTGGCCATCCGTGAGTCTATCGAGAATGAGATCAGACGGGAACGCGAGAGGCAGACTAACCCTTCTGCAATGgaGGTGGAAGAGGATGACCCTGTGCCTGAGATTAGAAAGGACCATTTCGAGGAAGCTATGCGCTTTGCCCGCCGCTCTGTCAGTGATAATGACATCCGCAAATACGAGATGTTCGCACAGACCCTGCAACAAAGCAGAGGCTTTGGCAGTTTCAGattcccATCCAGTAACCAAGGAGGAAGTGGACCAAGTCAGGGCTCTTCTGGTAGTGGTGGAGGCAACATCTTTAATGAGGACAACGATGATGATCTTTATGGATAAATGTGACCACGTGGCTAACCTTCACAGGCCACTCTTCATACAGGCCGCCGtgtacaaaagacaaaaaataaaaaattccacATTTTTAGGACtgtg

Function

symbol description
vcp Predicted to enable ATP hydrolysis activity and polyubiquitin modification-dependent protein binding activity. Acts upstream of or within chordate embryonic development; locomotory behavior; and regulation of cellular catabolic process. Predicted to be located in cytoplasm and site of double-strand break. Predicted to be part of VCP-NPL4-UFD1 AAA ATPase complex. Predicted to be active in cytosol and nucleus. Is expressed in several structures, including brain; digestive system; eye; fin bud; and trunk musculature. Human ortholog(s) of this gene implicated in several diseases, including Charcot-Marie-Tooth disease type 2Y; Paget's disease of bone; amyotrophic lateral sclerosis type 14; inclusion body myopathy with early-onset Paget disease of bone with or without frontotemporal dementia 1; and inclusion body myositis. Orthologous to human VCP (valosin containing protein).

NR:

description
PREDICTED: transitional endoplasmic reticulum ATPase

GO:

id name namespace
GO:0006302 double-strand break repair biological_process
GO:0030433 ubiquitin-dependent ERAD pathway biological_process
GO:0007049 cell cycle biological_process
GO:2000058 regulation of ubiquitin-dependent protein catabolic process biological_process
GO:0018279 protein N-linked glycosylation via asparagine biological_process
GO:0019985 translesion synthesis biological_process
GO:0006810 transport biological_process
GO:0009790 embryo development biological_process
GO:0005829 cytosol cellular_component
GO:0035861 site of double-strand break cellular_component
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function
GO:0008289 lipid binding molecular_function

KEGG:

id description
K13525 VCP, CDC48; transitional endoplasmic reticulum ATPase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239299.1 True 2652 mRNA 0.50 17 15463434 15471417

Neighbor

gene id symbol gene type direction distance location
fancg fancg,LOC107552563,LOC107746873,LOC107602006,LOC107708626,LOC107681392 coding upstream 479 15457352 ~ 15462955 (+)
pias2 LOC107681092,LOC107746809,LOC107676652 coding upstream 12912 15444366 ~ 15450522 (+)
arid3c arid3c,LOC107708619,LOC107681123,LOC107601998,LOC107746872,LOC103046366,LOC107552548 coding upstream 28565 15374137 ~ 15434869 (+)
sub1b sub1b,sub1,LOC107552599,LOC107602008,LOC107746806,LOC107661272 coding upstream 151768 15308839 ~ 15311666 (+)
si:dkey-3h3.3 LOC107681178 coding upstream 289597 15171061 ~ 15173837 (+)
LOC122344704 NA coding downstream 29085 15500502 ~ 15504606 (+)
cfap251 LOC107746856,LOC107681387,LOC107577995 coding downstream 84505 15555922 ~ 15563758 (+)
bcl7a LOC107552594,LOC107746817,LOC107680981,LOC107708648,LOC107553587,LOC107676671 coding downstream 92729 15564146 ~ 15568246 (+)
pigl pigl,LOC107746821,LOC107680910,LOC107552588,LOC107718344,LOC107676669,LOC107575753 coding downstream 213386 15684803 ~ 15705172 (+)
ubb ubb,UBC,LOC107553588 coding downstream 238562 15709979 ~ 15712715 (+)
G36793 NA non-coding upstream 120570 15327099 ~ 15342864 (+)
G36765 NA non-coding upstream 163078 15295704 ~ 15300356 (+)
G36762 NA non-coding upstream 167878 15275657 ~ 15295556 (+)
G36739 NA non-coding upstream 256008 15195528 ~ 15207426 (+)
G36746 NA non-coding upstream 286487 15174397 ~ 15176947 (+)
G36847 NA non-coding downstream 23241 15494658 ~ 15494950 (+)
G36852 NA non-coding downstream 33757 15505174 ~ 15505753 (+)
G36926 NA non-coding downstream 106701 15578118 ~ 15583662 (+)
G36918 LOC107746818,LOC107680961,LOC107552589 non-coding downstream 124031 15595448 ~ 15600161 (+)
G36937 LOC107680951,LOC107553567,LOC107746860,LOC107552540,LOC107718342,LOC107676644 non-coding downstream 150408 15621825 ~ 15623293 (+)
G36640 NA other upstream 742947 14718532 ~ 14720487 (+)
fgf5 fgf5,LOC107599194,LOC107746784,LOC107663393,LOC107661278,LOC107602014,LOC107744874 other upstream 810523 14645945 ~ 14652911 (+)
mrpl1 LOC107663378,LOC107746869,LOC107752362,LOC107599195 other upstream 1113443 14347562 ~ 14349991 (+)
LOC122345214 NA other upstream 1125669 14333023 ~ 14337765 (+)
LOC122345142 NA other upstream 1158130 14300043 ~ 14305304 (+)
LOC122345998 LOC107718355,LOC107676655,LOC107746825,LOC107680877,LOC107553589,LOC107552586 other downstream 920380 16391797 ~ 16395562 (+)
G37227 NA other downstream 1003291 16474708 ~ 16560732 (+)
G37228 ncor2,LOC107742750 other downstream 1015203 16486620 ~ 16561741 (+)
LOC122344991 camsap1b,LOC107587696,LOC107672541,LOC107552625,LOC107720249,LOC107745551 other downstream 1893432 17364849 ~ 17372859 (+)
LOC122345691 NA other downstream 2054607 17526024 ~ 17527444 (+)

Expression


Co-expression Network