nlgn3b (nlgn3b,LOC107672382,LOC107680388,LOC107733224,LOC107597232,LOC103045798)


Basic Information

Item Value
gene id nlgn3b
gene name nlgn3b,LOC107672382,LOC107680388,LOC107733224,LOC107597232,LOC103045798
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11304365 ~ 11322863 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239523.1
tgtttcgcTGCCGGTTTGTAAGCTCGCTCGTGTCCCTCCGGTTGCTTGGCAACGCGCGTGGCAGTGGGCGCTCCTGACCTTGCGTCCGCGACCGCGCACAGCGCGCGCGCTTAAAATAGACCCGGGGAGATTGACGTTaattgaaaataagaaaaacgcAAGAAGAGCCGAGCGCCGTTCACGCGGCTCGACGGGGGAAAAAGGGGGCATGTTGGATGGTGGGAACGATGAGATATGAGATTATTACAGTGCAAGCTCGGATGCGTTACCGGCTGAGCGAATCGGCAGgTTTGTGCTGAAAGGATCTGTGTGCTGGAAAAATGAACCGCTTCACCTGCTGAATTCATCAACCGGCATGGAGCACTTGGTGGTGCACACCTGGCTGCAGAGCTGCCCACTGGATCTGCCTGAATGCGTGGCGCGTGCTTGTTTTTGAGCGCTCGAGTGTAATTGTGTCGAATCAGAGAGCGTCACTGAGCTACAGACAGAGATTTATCAGTGTGAACGTGTGCTGTGAAGAGGCACCATGTGGCACGCACAGTCAGCAACTTACCTGCCGCTTACCCACCTGCTCCGCCGACCTCTGAACTTTGCACTGCGTTGGCTTCTTGTTTGGTTGATGTGGTCAGTCTCCATGGCAACTGCACTGACCTACCAGCCCACAGTAAATACAGCACTTGGCAGGCTAAGGGGGATGCGGGTGGCTGTGGCAACGGAGGGTCTGGGCCCTGTGGATCAGTACCTGGGTGTGCCTTACGCTGCCCCACCTGTAGGAGAGAAGCGCTTTATGCCTCCCGATGCTCCTTCGGCCTGGTCCGGCGTACGGAACGCCACCCGCTTCCCTCCCGTCTGCCCACAGACCGTTCGCAATGCGGTGCCCGATATCATGATGCCTGTCTGGGCCACCTACAACCTTGACACGGTTGCTACGTACCTGCAGGAGCAGAGTGAGGACTGCCTGTACCTTAATATATACGTACCCACACAAAGCGgTACAAAGAGAACGGGCGACATGTCAGCTGACACAGAGCGTTCGGAGGATGATGgGCTAAGGGATTCTCGAGATGACCCACGTCCTGTGATGCTGTTTATTCATGGTGGCTCGTACATGGAGGGCACAGGGAACATTATGGACGGTAGTGTGCTGGCCAGCTATGGCAATGTCATCATCATAACCCTCAACTACAGAGTGGGGATATTAGGGTTTTTAAGCACAGGTGACCAGGCCGCTAAAGGGAATTATGGTCTCTTGGATCAGATTCAAGCTCTCCGCTGGATCAACAAGAATATTGGATATTTCGGCGGTGATCCGGGCCGCGTGACCGTGTTTGGCTCAGGAATCGGAGCGTCCTGCGTCAGTTTGCTCACTCTTTCACATCATTCTGAAGGTTTGTTTCACAGAGCAATCATTCAGAGTGGCTCAGCACTGTCCAGTTGGTCAGTGAACTATCAGCCTGTGAAATACACACGTCTCCTCGCAGAGCGCGTTGGATGTAATGTCCTCGACACTCAAGATCTGGTCCTCTGCATGCAGAAGCGTAGCTACAGGGAGCTGGTGGAGCAGGAAATTCAGCCAGCACGCTTCCATGTGGCCTTTGGCCCTGTCATTGACGGTGACCTCATCCCGGATGACCCTGAAGTCCTCATGGAGCAGGGAGAGTTCCTTAACTATGACATCATGTTGGGCGTTAACCAGGGGGAGGGATTCCGCTTCGTAGAGGGTGTGGTGGAACCAGAAGAGGGCGGAGTTACTGGCTCGGATTTTGACTTCACCATATCAGATTTTGTAGACGGTCTCTACGGTTATCCAGAAGGGAAGGACACTCTCAGAGAAACCATTAAGTTCATGTACACAGACTGGGCCGATCGAGACAATCCCGAAACCCGACGTAAAACCCTCGTGGCCATGTTTACAGATCACCAGTGGGTGGAGCCAGCTGTGGTGACGGCTGACCTGCATGCACGTTATGGTTCTCCGACCTTCTTCTATGCATTCTACCATCACTGCCAGAGCCCCATGAAGCCTCCATGGGCAGACTCCGCACACGGCGATGAGCTGCCCTACGTCTTTGGAATTCCTCTTATTGGTCCGACAGAACTCTTCCCCTGCAACTTCTCCCGCAATGATATCATGCTGAGCGCCGTCGTCATGACCTACTGGACCAACTTTGCAAAGACCGGggATCCGAACAAGCCAGTTCCTCAGGACActaagttcatccacaccaagGCAAACCGTTTTGAAGAAGTGACATGGGCCAAGTACAGTCCTCATGACCAGCTATATCTGCACATTGGGCTGAAGCCTCGTGTTCGTGATCATTATCGAGCTACTAAAGTGGCCTTCTGGAAGCATCTGGTACCTCACCTGTACAACCTGCATGACATGTTCCACTACACATCCACCACCACAAGGGTCCCACCTCTTCTGACCACACACAGTTCCCACAGCGCTACTCCTCGCCCGGGGGGCAACAAGGCTCGTACCCCAGGTAAGCAGCCCCCCCAATCCACAGCACGCAGCGGGCCGCTGGTCATCGCCAACCCACGGGATTACTCCACAGAGCTGAGCGTCACGATCGCCGTTGGAGCATCGCTTCTCTTTCTCAATGTCCTGGCCTTCGCTGCGCTCTACTACCGCAAGGACAAACGCAGCCGGCAGGACACGCCCCCTCAGTCCGCCCCCCAGCGCCAGACCCCGCCCAACGATCTCAGCTACACGCCCACTTCCATCTCAGGAGGTAACCAGGAGGAGGGCTCCCTGTGCGACCCTCTCCGTCTGACCCCAGCATCATCTCCGCGGGATTACGCCCTCACTCTCCGCCGCTCGCCGGATGACATCCCGCTCATGACGCCCAGTTCTGTCGCGATGACGCCGAACAGCGGCACTATGACCCCCAACACTGTCACCTTGACGCCCAATAGCGTTACAATGACGCCCAACACCATTACCATGTCGCCCAATTCTTTGATGgggtatcccagcatgcaccctTACAACACCTTCACGCACGGATACAACTCCACCAGCCTGCCCCACCCGCACTCCACAACACGCGTATAACATGCAACAGAAACTCCACACGCCGACACGCAACACTCACGCCCCACAAATCCTTATTACTGTAAACCAGATCAAACCGGTGCAAACTGTTAGCCAGTATTCAAAAGTATAAACAGCAGGTGGACCCAATACATAACATGAGCACAATCACCTAGAAGAATCAGCGTAAACCGGAAGGAAGTGTCACCGCAGCACACTAACACAAGCAGTTCGGCTCAGTATGAACGCACTGCTTCGTACGCGTCTGACTTTTGTCGACTTTCACGTTATACGAGCAGTTACGAAACTTCTCCGTGGAATAAGATGGGGGAAAAAGGAGCAGTTGTAGTACCGCTGCCGCCTCTGGGTGGTGCAGCAAGACTCTTAAAGACCCCGCAGGAACAGTAGGGGGCGCTGGAGTCCCATCAGTGGTTCACCATTACGAACCGACCAAGCACTTATTCTAagatatgtaataataataacctgtaataacaaacatattattaatGGCTATTGTACAGTATAACATATATTAACGTCAATGTACAGACAGCTTTTTTGAAtgtgtcagaaaaaaaaataatttctaatcGTTTTTAAACTCAGATTATATCCATAGCAAGAAAGGTCATTCGAAGCCCGATTGATTTTCgatcctgatttttttttttccctttctttttaaaagtactaTTTTATAGCACatttctctctatctttctctctctctctctctctgtctctctgtctttctttcttttctccccCTTTCACTCCGTGGACGGGTGCGTTGTGCATTTTACTTTTGGCGTGCTCTATCCATTTAGTTGTAGATTACGCAAAAGGATCGCATTTTAAAAGAGCTGAATGCGTGCAAAGATTATTCGTGAGCGCGAGAGAGCGGATGTGTACAATTTTCAAGTTAAGcatctttaaataatttgtgtCTTGCTAAATGTTATCATTTTGTGAAAACGCTTTTCGATCATTTGGAATCTGTATTGTATCTGAGTTTGTTCGATATGTTTTGTGAAGATGTTCGAACTCGATTTGAAAGCATTgcgtttctttttctctgtatttATCGGTGATATGACATCACTCATGCAGTAATATGACATCACTCATGCTGTGATATTACATCACTCGCGCCGTGATAGGACATACAGGCTTTGCTGAGAACTTGCGATGTTAATCTTTTCTATAAAACATGAATGTGGTGATTTGTACCGAACACAGGGCTTTCTCCGATGAAGGTCGTTCTATAATAATATCGTGTTTACTATGGGTCTGCACAGAGTTTGCACAGGGGATGCGGTCGTGTAATCATGGTGTCATATCCTGCCAGATGGTTAGATTCTCCATGTTACCCATGTTAACCAACCCTGCCATAATTTTTGGGCCAAATTTGCGATACAGTTTCCTTGGTAACCAGCAGAAAGTTTGTCTGTTAACGTGTTTGTGTGAAAGTCCAACAGCTTTATAAAAGAATTTGCGGTATTTACAACCACTTGAGTTCATCCGGACTCTGAAGAGGAAACACGATGGCAAACGAACGAAAGCAGAAGCGTGTTTCTGCTGGACGAGGAGGAGGGTTGACCTGTGTGCTCA

Function

symbol description
nlgn3b Predicted to enable neurexin family protein binding activity and signaling receptor activity. Predicted to be involved in several processes, including neuron cell-cell adhesion; synapse assembly; and synaptic vesicle endocytosis. Predicted to act upstream of or within cell adhesion and synapse organization. Predicted to be located in cell junction and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface and synapse. Predicted to be integral component of plasma membrane. Is expressed in several structures, including digestive system; gonad; heart; nervous system; and swim bladder. Human ortholog(s) of this gene implicated in Asperger syndrome and autistic disorder. Orthologous to human NLGN3 (neuroligin 3).

NR:

description
PREDICTED: neuroligin-3-like isoform X1

GO:

id name namespace
GO:0007416 synapse assembly biological_process
GO:0007155 cell adhesion biological_process
GO:0045202 synapse cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0009986 cell surface cellular_component
GO:0042043 neurexin family protein binding molecular_function

KEGG:

id description
K07378 NLGN; neuroligin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239523.1 True 4657 mRNA 0.51 8 11304365 11322863

Neighbor

gene id symbol gene type direction distance location
cchcr1 LOC107680404,LOC107732622,LOC107747821,LOC107687693,LOC107592355 coding upstream 44885 11250625 ~ 11259480 (+)
stag2a stag2a,LOC107680370,LOC107732619,LOC107597229,LOC107687653,LOC107592356 coding upstream 55201 11233407 ~ 11249164 (+)
acsl4b acsl4b,LOC107747809,LOC107687654,LOC107597230,LOC107732603,LOC107680372,LOC107592357 coding upstream 71371 11223954 ~ 11232994 (+)
cwc15 cwc15,LOC107597228,LOC107592276,LOC107732607,LOC107747811 coding upstream 81545 11218523 ~ 11222820 (+)
fam76b fam76b,LOC107680374,LOC107597227,LOC107687655,LOC107592275 coding upstream 86620 11210376 ~ 11217745 (+)
plp1b LOC107597234,LOC107680389,LOC107672433,LOC107592271 coding downstream 1880 11324743 ~ 11330306 (+)
iqcd LOC107733227,LOC107672405,LOC107597236 coding downstream 39203 11362066 ~ 11364940 (+)
uprt uprt,LOC107733222,LOC107672530,LOC107680369,LOC107748634 coding downstream 77586 11400449 ~ 11403283 (+)
si:dkey-237j10.2 LOC107672540,LOC107756556,LOC107597242,LOC107748630,LOC107680403 coding downstream 144857 11467720 ~ 11471124 (+)
si:ch211-26b3.4 si:ch211-26b3.4,LOC107597246,LOC107756552,LOC107565423,LOC107741180,LOC107680385,LOC107672834 coding downstream 150249 11473112 ~ 11512262 (+)
G35274 kat5,LOC106563454,LOC107597226 non-coding upstream 94960 11204500 ~ 11209405 (+)
G35267 NA non-coding upstream 116671 11187254 ~ 11187694 (+)
G35229 NA non-coding upstream 285173 10945056 ~ 11019192 (+)
G35202 NA non-coding upstream 465998 10838012 ~ 10838367 (+)
G35197 NA non-coding upstream 488064 10813457 ~ 10816301 (+)
G35304 prps1a,LOC103031347,LOC107733231,LOC107597240,LOC107672505 non-coding downstream 59807 11382670 ~ 11387170 (+)
G35309 NA non-coding downstream 82665 11405528 ~ 11405761 (+)
G35311 NA non-coding downstream 91178 11414041 ~ 11414688 (+)
G35322 NA non-coding downstream 118676 11441539 ~ 11442411 (+)
G35316 NA non-coding downstream 141006 11463869 ~ 11465339 (+)
gria3a gria3a,LOC107597231,LOC107672342,LOC107732609,LOC107680378,LOC107733225,LOC107592272 other upstream 934 11266642 ~ 11303431 (+)
LOC122346180 LOC107597222,LOC107680408,LOC107732624,LOC107592391,LOC107732598,LOC107687664,LOC107747817,LOC107687696 other upstream 154140 11136223 ~ 11150225 (+)
map7d2a LOC107687666,LOC107592282,LOC107599951,LOC107754729,LOC107726367,LOC107672739 other upstream 239919 11046479 ~ 11064446 (+)
senp3a senp3a,LOC107744451,LOC107687680,LOC107599939,LOC107672741,LOC107592295,LOC107726393 other upstream 370612 10926823 ~ 10933753 (+)
osbp2b si:ch211-106a19.1,LOC107687692,LOC107744438,LOC107726355,LOC107672777,LOC107592367 other upstream 568306 10717531 ~ 10736059 (+)
glra4b glra4b,LOC107741187,LOC107565418,LOC107680382,LOC108442052,LOC108259905 other downstream 315653 11638516 ~ 11652683 (+)
smarca1 smarca1,LOC107597262,LOC107672796,LOC107741199,LOC107663213,LOC103034185,LOC105028962,LOC105893234,LOC106603320 other downstream 601365 11924228 ~ 11943110 (+)
G35720 LOC107654642,LOC107597266,LOC107743332,LOC107741203,LOC107557123,LOC107663229 other downstream 926275 12249138 ~ 12255672 (+)
si:ch211-225b11.4 si:ch211-225b11.4,LOC107743340,LOC107597327,LOC107654601,LOC107580265,LOC107735986 other downstream 1191150 12514013 ~ 12528790 (+)
iscu si:ch211-191d15.2,iscu,LOC107597282,LOC104937683 other downstream 1380489 12703352 ~ 12705245 (+)

Expression


Co-expression Network