prkaa1 (prkaa1,LOC107730998,LOC107693840,LOC107691024,LOC107597029,LOC107726302)


Basic Information

Item Value
gene id prkaa1
gene name prkaa1,LOC107730998,LOC107693840,LOC107691024,LOC107597029,LOC107726302
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 6965149 ~ 6977675 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239641.1
tctttccctctctatctctatctcgctcgctctctctctcaggtagGGCCTCAGAGCGAAGATGGCGACGGACAAACAGAAACATGAAGGCAGGGTGAAAATCGGACATTATATTCTCGGAGACACCCTGGGAGTGGGCACGTTCGGAAAAGTCAAAGTGGGCCAGCATGAATTGACCAAGCACCAGGTGGCGGTAAAGATTCTGAACCGGCAGAAGATCCGCAGTCTGGACGTGGTGGGCAAGATTCGACGAGAGATCCAGAACCTCAAACTATTCCGTCACCCGCATATCATCAAACTTTATCAAGTCATCAGCACACCAACAGACATCTTTATGGTAATGGAGTATGTGTCAGGCGGAGAACTCTTTGACTACATCTGTAAAAATGGAAAGTTGGACGAGAAGGAGAGCAGGCGTCTTTTCCAGCAGATCATCTCAGGGGTGGATTACTGCCACAGACATATGGTGGTGCACAGAGACCTCAAGCCTGAGAACGTCCTGCTGGACGCGCACATGAATGCCAAGATTGCAGACTTTGGCTTGTCAAACATGATGTCAGATGGAGAATTTTTAAGGACGAGTTGCGGTTCTCCTAATTATGCTGCTCCTGAAGTCATCTCTGGAAGGTTATACGCAGGTCCTGAGGTGGACATCTGGAGCAGTGGAGTGATTTTGTACGCCCTGCTGTGCGGAACGCTGCCGTTTGACGACGACCACGTGCCAACACTGTTCAAGAAGATCTGCGATGGCATCTTCTTCACGCCTCAGTACCTGAACCCCTCCGTTATTAGCCTTCTGAAACACATGCTCCAGGTGGACCCCATGAAGAGAGCCACTATTAAAGAGATTCGGGAGGATGAGTGGTTTAAACTAGATCTCCCCAAGTATCTGTTCCCAGAGGACGCTGCGTATAGCAGTAATATGATCGATGAGGAGGCACTGAAGGAGGTGTGCGAGAAGTTTGAGTGCACTGAGGAGGAGGTGCTCAACTGCTTGTACAGTCGGAATCACCAGGATCCTCTTGCTGTGGCCTATCACTTGATCATAGACAACCGGCGCATTATGAGCGAGGCCAAAGATTTCTATTTGGCCTCCAGCCCCCCGGACAGCTTCCTAGACGACCTGCCCGCGCACCACTCCGCGAAGATTCACCCCGAGAGAGTGCCATTCCTGGTGACCGAGTCCCAGCCACGACCTCGACACACACTGGATGAGCTCAACCCCCAAAAGTCCAAGCATCTCGGTGTCCGGCGGGCCAAGTGGCACCTGGGAATCCGTAGCCAGAGCAGACCGAATGATATCATGAGCGAGGTCTGTCGTGCTATGAAGCAGTTGGACTATGAGTGGAAGGTAGTTAATCCTTATTACTTGCGGGTGCGGAGGAAGAACCCAGTCACTGGCATACATACAAAGATGAGCCTCCAGCTCTACCAAGTGGACAGCAGGACCTACTTACTAGACTTCAGGAGCATAGATGATGACATGATAGAAGTGAAATCAGGAAGTGCCACACCTCACCGCTCTGGCTCAGTCGGTAACTACCGGACTACCCTAAAGAACGACAGGAACGAGAAAAACGAATGCGAGGATGCAGCAAAGGGCGACACGTCCGCACCCTCCACGCCTCCCATATCCGGAGGGAAAGCGGCAGAAGGCTCTCTGGCTTCTTCTCTTACCTCCTCAGTGGATTCCACAGGGGGAGAGATCCTCCCCCGCCCAGGAAGTCACACCATAGAGTTCTTTGAGATGTGCGCCAACCTCATCAAGCTGCTAGCGCGATAACTTGTGGTTCCTCTGATGccttctctctcactctcctctGTCTTCCCTCTCACTCTCTggcttttttctctttcctctggAATACTGTCTACCTCTTCATCCTCTGATATCCGTGTCATCGTCCACAGCGGCCCTTCTATCTCTGttctttttgtctctctttctctctctcagcgtCTTTAGAGCAATAAGCATGCGGACGGACTCGAGACTCCATGCATCCCATTCGCATGAACGCGCTGAGCGGTCTGTGGCACTGCGGTCACCAACATCAGCCTGTTTAGAAGCATTGAGAAAAGGTACAAGAAGGAAAAGGACGGAGGTTGCTGTGTTTCTGTGCCACAGTTAAGATGTCAGAAAGATTGCTAACTCTTTTAGGGATGGTTTTACAGTTCTTTTCTGGGTTCTATAGCGAGGATTTCCTCGCAGGGAGTGAGACGTTGAGGTGCATTTAAATGAGTTATACACTGAGCTAGCTGTACTGTACACAATGCTGTTGCTATTCTTGGTGGACCAAGAGAGATATAAAGAGCGAGCCCTTGTGAGGCATGTGGGACGACAAGAAAGGCAGAAAGCGCTTTTGCACAGTTTTACCTGTAAGTTTTTGTGGGCCAGTGTCAGAACTGGTTATCCCATTGAAGCGGCCTACTGGGAAGGGCACTCAATTAGGAGGAGCCACCTTAAAAGCAAGGCCAATTTAACGTGGTGGGCACTTTAACACAAAGGGACAACTTGATAAATCAGCCTTTCTTAAGGAAGAGACcaatattaaacacatttatccTGAAGGAGTGCAAAGTCCTTGCCTCCGTTTCatagatttttgttgtttgtttttgtttgtctgtcacactttagtttttttttttttttttttttttctactcgCTCACATTTTACAGAAATTTAAGTATATACAgaatttaaacatgcatttggATTTATATTTATCAGTGCTTTAAACGGGGTTGTAGATTGTATTAAAATTGTGATATCGGactggattttttaaaaaatatttgattgtatCGCTGTAAGATGTTTTATTCCATACACTGCTTTatcaaaaactttttcttttttttttttttactgttctttTAGTTGTTTTACAAAACAGTGGTTGCTTGAAAAAGACATTCTCATTAAAGGAAATGTATCCCCCCCAACTTTTACAAATGAAGTCTATTTGGTAAGACGGGTCAAGTATTAAAACGTTTTACGTTTACGGCTGAGatgtaataaacacacacacacacacacacagctgaggtGTCTAATTAAGTTTATCACCacaatgaaaatggaaaaaaagatccAATTAGAATTGAAATATTGACGCATCCCGATCGATCTTCATACTCACGTCTTAATGCTGTGATTGCAAAGTCATACGTGTAAGATCAGAAAAGAGGATAGCGCTTCCTACTCGCATGTGACTTTATGTGCCCTTGTACGAAACTGTGTCATAAACAGAATTCTACAAAAGTCCACAAAGAACTGCAACCCGTTAACAACGAATGCAATTATGTAGGAGCTCACTGATGTCTTCAGAGCAGTTGTTTCatagatgaaaaagaaaacaatgcaaGTTTTAAACTACTTTACTCGGAGCTCCAGCTCTGTTCAAATGAAATATCCAATATAGAAAAATCTAACacgtaatttaaaaataatacattaattgtATCGCAcagcatatttacattttaaagtcgTTCTTACCGCGTTTAAAACTCTTAGTTCTTACAAATGCAGCAGTGTCTCGTTCTCAAAAAGAATAGGAGATTTAAGGCCGGTATTTCTGATTTGACCTTCTGGAATTCTTGAGTCTTTTGTTACGTGCGTTTCCTAAAAGGATGGTgacggttttttttttgtcgtcaACTGCACTGTCATTTCAGAATCTCCCATTAATGAGATTTCAGAGCTAAAACTTGACAATCTGTGCTTTGCAAGTCAGCTTAAGACAAATCCAGGGAAATTTAGTTTTGCTCCGTTCCCTTTATCCCCCCCTCCCAAAGGTTATTTCCCCATGTAGCTGTCTAATCAAATGTTAACTCTTCTTTATCACTAGGGAAGCATTTCAGTGTCTCCACGGGTTGTTTATTCAGCCAACGCAAAGAGGTTTAGAAAATCTGTTGTTCTTCTCTTAACTGCAGTTATGTTGATTATCTGTGCAGAAATGCACCTTGCCAATGTAAATTGACAGATATTTACTGATAATTTACAGTTGAAAAGATGATTTGTAAATACAACTGCCTAATAAAATGATACATGAAAAAATGA

Function

symbol description
prkaa1 Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within negative regulation of hh target transcription factor activity. Predicted to be active in nucleus. Is expressed in several structures, including axis; digestive system; margin; mesoderm; and nervous system. Human ortholog(s) of this gene implicated in Huntington's disease; breast cancer; and colon cancer. Orthologous to human PRKAA1 (protein kinase AMP-activated catalytic subunit alpha 1).

NR:

description
PREDICTED: 5'-AMP-activated protein kinase catalytic subunit alpha-1

GO: NA

KEGG:

id description
K07198 PRKAA, AMPK; 5'-AMP-activated protein kinase, catalytic alpha subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239641.1 True 4072 mRNA 0.44 10 6965149 6977675

Neighbor

gene id symbol gene type direction distance location
ifitm1 NA coding upstream 652 6963937 ~ 6964497 (+)
kyat1 ccbl1,LOC107731000,LOC107691018,LOC107596979,LOC107726298,LOC107587404,LOC108431029 coding upstream 2760 6957273 ~ 6962389 (+)
surf6 surf6 coding upstream 8026 6954829 ~ 6957123 (+)
LOC122346227 NA coding upstream 13420 6951658 ~ 6951729 (+)
LOC122346226 NA coding upstream 13783 6951290 ~ 6951366 (+)
LOC122344685 LOC107691026,LOC107598247,LOC107587401,LOC107693829,LOC100001344 coding downstream 14547 6992222 ~ 6999388 (+)
glipr2 LOC107723337,LOC107598272,LOC107691043,LOC107587479 coding downstream 75295 7052970 ~ 7059426 (+)
zgc:55461 tubb4b,LOC107597040,LOC107587400,LOC108258863,LOC107693853,LOC108261046,LOC106575097,LOC103024068,LOC108241762 coding downstream 85304 7062979 ~ 7065087 (+)
pole3 pole3,LOC107693859,LOC107587393,LOC107691032,LOC107597112 coding downstream 141666 7119341 ~ 7120962 (+)
lrsam1 lrsam1,LOC107597066,LOC107587365,LOC107723333,LOC107740956 coding downstream 146385 7124060 ~ 7133933 (+)
G33712 NA non-coding upstream 34364 6929647 ~ 6930785 (+)
G33708 NA non-coding upstream 43510 6920745 ~ 6921639 (+)
G33665 NA non-coding upstream 470619 6475701 ~ 6494530 (+)
G33619 NA non-coding upstream 729508 6232297 ~ 6235641 (+)
G33506 NA non-coding upstream 788494 6174621 ~ 6176655 (+)
G33844 NA non-coding downstream 156619 7134294 ~ 7134884 (+)
G33850 NA non-coding downstream 157232 7134907 ~ 7135122 (+)
G33852 NA non-coding downstream 167385 7145060 ~ 7146006 (+)
G33853 LOC107723360,LOC107740932,LOC107691030,LOC107597084,LOC107587366 non-coding downstream 169360 7147035 ~ 7147616 (+)
G33857 NA non-coding downstream 188933 7166608 ~ 7168142 (+)
si:dkey-34e4.1 si:dkey-34e4.1,LOC107700938,LOC107596916,LOC107710760,LOC107587412 other upstream 139783 6793365 ~ 6825366 (+)
dab2ipb dab2ipb,LOC107693836,LOC107710761,LOC107700936,LOC107726296 other upstream 202341 6617276 ~ 6762808 (+)
G33664 NA other upstream 473163 6473347 ~ 6491986 (+)
hexb hexb,LOC107718643,LOC107700931,LOC107655935,LOC107570862 other upstream 709809 6247795 ~ 6255340 (+)
G33494 foxd1,LOC107598200,LOC107718663,LOC107700903,LOC107596217,LOC107757501 other upstream 876587 6087262 ~ 6088562 (+)
kank1b kank1b,LOC107730999,LOC107691025,LOC107597012,LOC107587402 other downstream 873 6978548 ~ 6988772 (+)
gpr107 LOC107723348,LOC107691037,LOC107597176,LOC107693862,LOC107740935 other downstream 308893 7286568 ~ 7300729 (+)
G33878 c9,LOC107691041 other downstream 360793 7338468 ~ 7344078 (+)
LOC122345182 ns:zf-e68,myhz1.2,myhz1.1,myhz2,myhc4,LOC107598006,LOC103370545,LOC107723326 other downstream 395933 7373608 ~ 7449497 (+)
G33891 myhz1.2,myhz2,myhz1.1,ns:zf-e68,myhc4,mmyhl1,myhb,mmyhl2,LOC107723326,LOC105016875,LOC105016873,LOC106565367,LOC107088603,LOC107384188,LOC107093413,LOC103461378,LOC108241321,LOC107083053,LOC107083052,LOC107378336,LOC106938339,LOC106596646,LOC106596400,LOC106585883,LOC106597527,LOC106594844,LOC108261437,LOC106595486,LOC106598139,LOC108261508,LOC103379498,LOC103379499,LOC108444093,LOC101482140,LOC107660779,LOC108443910,LOC108415768 other downstream 442465 7420140 ~ 7520241 (+)

Expression


Co-expression Network