ewsr1b (LOC107599962,LOC107744436,LOC107673396,LOC107592307,LOC107672746)


Basic Information

Item Value
gene id ewsr1b
gene name LOC107599962,LOC107744436,LOC107673396,LOC107592307,LOC107672746
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 10611574 ~ 10619892 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239678.1
GTGTTGGTATGTTCCACATTGACTTCACGCACGCGCACTAGTCGCGCATGCACAGTCGTTCACATCGCGTACGTTCTCCAACGGAAAGATGGCGTCAGTCTcaaATTATAGCAGCTACAACCAGGCTGGTGCGCAGCAGTCGTATGGCTCATACACCACCCCACCTGCTCAGGGCTATGGACAGACTGCACAGGGTTATTCTCAGCAAGACTATGGCTCATATGCTCAACCCGCCGCTGCACCCGAGTCCACCTACAGTCAGGCAACGCCCTCTACTGGAGCGTATGCACAGCAGCAGTATGGATCATCATATGGACAAGCAGCTACGACTGCAGCAGCAGCACCAGCTGCATATGGAACAGCACAGCCAGGAGCTTATAATCAGCCTGCACAGAGTTACGGGGCCAGCAGCTACACCAACTCCACTGCAGCCCCTGCTGCCCAGGCCTCATATGGCTCCCAGCCCGGGTACTCCACCCAGCCGGCTTATTCTGGCTACAGCCAGCAACCTGCTGCCTCCGCTCCTCAGAGCTATAGTGCAAGTGGCCAGCCGGCCTACAACCAAGGTGCTTATTCCCAGGCTGGAGCTTATTCTCAGCCTCAAGGTGGGTACCAGGCTCAGCAGCCAGGCTATGGGCAACAGCAGCAGAGCAGCTATGGGCAAGGACAGCCGCCTCAGCAGCACCAGCAAGGACCCCCTGCTGCCTATCCCCCTCAGGGCAACAGTTCTTACGGACAACCTCAGTACGGCCAGCAGAGTGCATCGCAAAATGATTACAACCAGCAAAGCCCTTATAGCAGTTACAGTCAGAGTGGCGTGAGCGGAGGCTACCCAGGGTCACAGCGGGGTGGATACCCAGGGGATTCCGGCAGAGATGGTTACGATCGCGGAGGTCCTCGTGGTCGTGGGGGTATGGGCCGCGGAGGCATGGGCATCGCTGGAGACAGAGGGGGCTTCAATAAGCCTGGTGAAGGCATGAGGGGTGGAATGGATCGTGACATGGGGCATCCAGGAGAGCAGGACTCTGAGAACAGCACAATCTACATCACAGGCCTCACTGAGAATGCCACTCTACCAGAGATGGCTGACTTCTTCAAACACTGTGGAGCAATACGGATAAATCGCCGTCTGAATCAGCCAGCCATAAACATCTACACAGATAAAGACACTGGCAAACCAAAGGGAGATGCCACTCTGTCCTATGAAGAACCTGCTTTTGCCAAAGCTGCTGTTGAATACTTTGATGGTAAGGAGTTCCAGGGACGGAGGTTAAAGGTCTCTATGGCTCGCCGGAAGCCCATGATGGGGGGGATGAGAGGAGGCATGTCAATGAGAGGTGGCCCTGGGATGGATCGTGGAGGTATGGGAAGAGGAGGGGAGAGAGGCGGTTTCCCCCCTCGTGGAGGCCCTCGAGGTGGAATGGGTTGGAATGGACCTCCGGGAGGCAATGTGCAGAAAAGAGCTGGAGACTGGGAATGTCCCAACCCTGGGTGTGGAAATCAGAACTTCTCTTGGAGAACTGAGTGTAACCAATGTAAAGCTCCAAAACCTGAAGGCCTGGGAGCTCCTCCTTTCCCTCCTGCAGGCGGTGAACGTGGCAGGGGTGGAATGAGGGGTGGCCGGGGAATGGATCGTGGTGGTCCGGGGGGCATGCGTGGAGGCTGGGGAGGAGATCGTGGTGGCTTCAGAGGTGGCCGTGGTGGAATGGACAGGGGTGGATTCAGAGGAGGTAGCAGGGGCGGTCCTCCCATGGACAGAGGGGGCAGGAGAGGCATGGGACCCCCAGGCAAGATGGATATGAGGGACCATCGCCAGGAACGCAGAGACAGACCCTACTGAGATCATTCATTCATCAAGCAAACGCAAATTTACATAGAGGAAAATTTTAaagtccttttttatttatgattccATATTTATACATggctatcttttttttttttttttttttttttttcttggtttttaatttcattaccAAGTTGTGGTTTTAGTTAAACATTTAGGTTGcgtttttttgtattcagtaatggccttttttccttttaaagataCTCAGTTGCCCTGTAGTCACCATTTTTGGGGATGTCTGTCTGTCTTACATGTCTCTCTATGTAACTATGTActttgaactgtttttaaaaaaaaaaaataaacttttccaCCTCCAGTCA

Function

NR:

description
PREDICTED: RNA-binding protein EWS isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239678.1 True 2175 mRNA 0.53 16 10611574 10619892

Neighbor

gene id symbol gene type direction distance location
emid1 emid1,LOC107599927,LOC107744434,LOC107673410,LOC107730716,LOC107672770,LOC107592308 coding upstream 2707 10552975 ~ 10608867 (+)
pnpla7b pnpla7b,pnpla7,LOC107744433,LOC107673412,LOC107599921 coding upstream 64641 10533187 ~ 10546933 (+)
dph7 dph7,LOC107730721,LOC107672791,LOC107744432 coding upstream 80494 10527090 ~ 10531080 (+)
abca2 abca2,LOC107730718 coding upstream 86784 10469676 ~ 10524790 (+)
rorb rorb,LOC107744430,LOC107730723,LOC107599920,LOC107592316 coding upstream 177881 10408635 ~ 10433693 (+)
gas2l1 gas2l1,LOC107673400,LOC107744437,LOC107599929,LOC107592306,LOC107672792,LOC107730708 coding downstream 1765 10621657 ~ 10647143 (+)
ap1b1 ap1b1,LOC107599930 coding downstream 27701 10647593 ~ 10672570 (+)
rasl10a rasl10a,LOC107672696,LOC107744439,LOC107730711,LOC107592305,LOC107599975 coding downstream 54087 10673979 ~ 10687038 (+)
LOC122345984 si:ch211-106a19.1,LOC107599964,LOC107744438,LOC107730710,LOC107592368,LOC103470291,LOC106959535,LOC107672777 coding downstream 70887 10690779 ~ 10701390 (+)
trmt2a trmt2a,LOC107687689,LOC107672731 coding downstream 129509 10749401 ~ 10754264 (+)
G35081 NA non-coding upstream 63949 10547221 ~ 10547625 (+)
G35043 NA non-coding upstream 277766 10333219 ~ 10333808 (+)
G35042 NA non-coding upstream 281252 10329889 ~ 10330322 (+)
G35041 NA non-coding upstream 284113 10327031 ~ 10327461 (+)
G35040 NA non-coding upstream 284860 10325866 ~ 10326714 (+)
G35197 NA non-coding downstream 193565 10813457 ~ 10816301 (+)
G35202 NA non-coding downstream 218120 10838012 ~ 10838367 (+)
G35229 NA non-coding downstream 325164 10945056 ~ 11019192 (+)
G35267 NA non-coding downstream 567362 11187254 ~ 11187694 (+)
G35274 kat5,LOC106563454,LOC107597226 non-coding downstream 584608 11204500 ~ 11209405 (+)
fam219ab fam219ab,LOC107744421,LOC107595023,LOC107673386,LOC107752501,LOC107672754,LOC107592322,LOC107673387,LOC107595025,LOC107744422,LOC107592323 other upstream 471841 10064217 ~ 10139733 (+)
si:ch211-102c2.4 NA other upstream 812216 9796381 ~ 9799358 (+)
man1b1b man1b1b,man1b1,LOC107709694,LOC107681241,LOC107560236,LOC107757969,LOC107690671,LOC107587425 other upstream 1740056 8864202 ~ 8871518 (+)
snx19a snx19a,LOC107597619,LOC107681657 other upstream 2306128 8289720 ~ 8305446 (+)
spns3 spns3,LOC107597443,LOC107712368,LOC107664514,LOC107677447,LOC107722774,LOC107587440 other upstream 2600975 8001578 ~ 8010599 (+)
osbp2b si:ch211-106a19.1,LOC107687692,LOC107744438,LOC107726355,LOC107672777,LOC107592367 other downstream 97639 10717531 ~ 10736059 (+)
senp3a senp3a,LOC107744451,LOC107687680,LOC107599939,LOC107672741,LOC107592295,LOC107726393 other downstream 306931 10926823 ~ 10933753 (+)
map7d2a LOC107687666,LOC107592282,LOC107599951,LOC107754729,LOC107726367,LOC107672739 other downstream 426587 11046479 ~ 11064446 (+)
LOC122346180 LOC107597222,LOC107680408,LOC107732624,LOC107592391,LOC107732598,LOC107687664,LOC107747817,LOC107687696 other downstream 516331 11136223 ~ 11150225 (+)
gria3a gria3a,LOC107597231,LOC107672342,LOC107732609,LOC107680378,LOC107733225,LOC107592272 other downstream 646750 11266642 ~ 11303431 (+)

Expression


Co-expression Network