ubac1 (ubac1,LOC107699722,LOC107587514,LOC107555477,LOC106579794)


Basic Information

Item Value
gene id ubac1
gene name ubac1,LOC107699722,LOC107587514,LOC107555477,LOC106579794
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 18953377 ~ 18961721 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239697.1
TGCTGCTCCCTACCGACTGATGTCGTTCTCTCATCGCAGGTGTCAACGGAGCGAGCGTCTCTGCTGCAGCTGCGAGCGAGCAAACCTCTCTGTCCCGGCGAAAATATATCAGTCCTACGGAGCAGGCGGGCAGGACTGATCTGACGGCCTGAAAATGTCCGAATGAGACCGTGAGCCCGTGTCTGTTGCCAGGGCAGGTTTTAGCGGAGAAGAGGGCGGCTTTCCGGGCTGTAGACAGCGGGCTCGCGGAGCGTCTTCAGCGGGGAACGCTGCGGtcccgccgccgccgccgctaCAATGTTCGTGCAGGAGGAGAAGATCTTTGCAGGCAAAGTCCTGAAGGTCCACATCTGTACCATGGAGGGCACCGAGTGGCTGGAGGAAGTCACGGAAGACACCACTATAGAGAAACTCAAGGAGAAATGCTTAAAACATTATGTCCACGGAAGTCTAGAGGATCCTAAAACTCTTACACATCACAAACTCATTCACGCTGCCACTGAGAGAATTCTCACAGAATCCAAAACAGTTGCTGAGGAAAATCTCAAAGATAAAGACTGCTTATTATTGATAAAGAAAAGACCTCCACCGGCTCCGCCAAAAATGGCTGACATATCTTCTGAAGAGAAGAAGAAGCAAGAGAACAAGGCACCGGATAAGGAGGCCATCCTCAAAGCCACGGCAAACCTGTCCACTCGTAACACTGACCGCACTGTAACTCAACACAATATCAGAGATTTTCAAACAGAGCTGAGGAAGATTCTGGTCTCACTTATTGAGGTGGCTCAGAAGCTGCTGGCTCTGAATCCAGATGCTGTTGAACTCTTTAAAAAGGCCAATGCCATGCTGGACGAGGACGAGGAGGACCGCGTGGACGAAACGGCCCTGCAGCAGCTGACTGAGATGGGTTTCCCCGAGAGTCGTGCTGTGAAGGCTCTGCGCTTAAACCACATGTCTGTGACCCAGGCTATGGAATGGCTGATTGAACACGTGGATGACCCCATGGTTGACACTCCTCTGCCTGGACAGGACACCCCAGGGGCGGCCGCCGCTGCAGCTCCTGCCCCTGCCCCAACACCCTCTGCCACAGCTTTAGGAGCCCGGGCCCGGCTGTCCTCCCAGGCCAGCCTAGAGGAGGCCAAGCAAGACGAACTGACAGAGATCTTCAAACGGATCAGGAGGAAAAGAGAGTTCAGGCCTGACTCACGGgcagTCATTGCGCTGATGGAGATGGGCTTTGATGAGAAGGAGGTGATTGATGCCCTGCGCGTCAATAACAATCAACAGGATGCTgctTGTGAATGGCTGCTTGGTGACAGAAAGCCCACCCCTGAGGATCTGGACAAGGGCATTGATACCAACAGTCCCCTGTTTCAGGCCATCCTGGAGAACCCCGTTGTACAGCTTGGTCTCACAAACCCCAAGACTCTTCtagCATTCGAGGACATGCTGGAGAACCCTCTGAACAGCACGCAGTGGATGAACGATCCTGAGACAGGTCCCGTCATGCTCCAGATCTCCAGAATCTTCCAGACACTCAATCGCACGTAAAGCACACCTCATCTGTGGAGCAGCTGGAACCACAGCATAGGGGGAAAAGGTCAATCATTTAGATgacagagcgtgtgtgtgtgtgtgtgtgtatagtttgtgtgtgtgtgtatgtgacatAACTATTGTTTTAAGTGGAGAAGTCACAGAAGATGAATGTAAAAATACGATTATGACATTTTCACATATACAGAGGATAATATCTATTTATAACTACACAACACTTGTACAAATACAATGTAAGCGGTAACTTAATGATAAATAGCTAACtccattatttagttttttatgttttaataagatctgtttttaattatattaagcacattactttattttatataatttctctATATAATTGTACgattggaataaaaaaaaaaaaggataggaAAAAAAATCGCCAGAAAGCaattttctatgttttttgtGCTCAAAGATCAAATTTCAAACCAAATTATTCAACACTTCACATGGTACACTTGTCATAACTGAATGTTTCTACAGGGAgataaataatgtgcattttattttttttcaccggttcaatgaaaatgaaatccTTCATGTATTAGATCGTAAGGTCCTtccaaaaacatcaaatgatGGTACGTTTTGAGGGAAAGCAAAGCAAGCACCAGCAGTTTTCGGCGACACCTCATTCGAAAATTATTCAAGCATTATGGTTTCATTAACATGATGTTGTGGTAAGGCAATAGCAATTGGCAGCCCCTTGCGGACAAAGATACATGAAAGATAGGGAAATCAAACCCGATTCCTCGTATCTCTTTCACTCTTCTGTTCCATAAAAAGACTATTCAGCTGAACCCATCTGTCCAAATGGACACAAGTCAGCTTTGATTCTGTCGGTTTAGAAAAAGCTGATGTAAATGAGTACTGGATCATTATTCATTATCTTAGTTTTGTCTCCCAGTAGCTCCTGCATCAGGGGTTTCTAAGTATTACAGTACCTTTATCCACCATCATGATCAAGCTGCTGCCTCTGATCTCCCTCTCATCTCGGCACGTTTAATGTGAGTCTTACTTTCCATCAGGAGGCTGGACAGACTTTAGTTTGCacttaactaaaacaaaacgaCTCTTATTTTGTGGATTGGTTGTACTACACAGTATGTTTGTGTTCAGCGACAAGGATGTGCTCTCAGTGTCATGTcactttttacagtgcactTTCTAGTTtgcaaaggctgcatttatagtacacaacattattttaaagggtGTAGGAGATGTTCGCTTTGAAACTCCCTGTCTGGGATCATGTTGAGGCATTGTTTGGTGTGGAGATCTTTCATTTGTATGCTCCGCTTCAAATACCTGCTCTGGgatttctaaaagaaatgaagacccgagatgaaaaatgttatttaaatgtctctattatgatttttttttttttttttaacattttgatttgcatcagataaatatattacaaaaatgcggtcattttaaatttagaagTAATTGTGTGAATTAGAGGAttcgatattttttttttttttttttttttttttttttcttttggccAAGTGTGGAGTGTTtccatttaatatttgaatCGTGTTGGTGTGAAGTGTGTGCTCAGGGGTTTCTTAGCCATACCGGGCAAATATCTGCTATAGTAATGCCTACTTTATCAATACAAATAACAGTAGTGTAGTGATTGCATTATCAGAGAACTCTATGAATATATCTGAAAACTTACTCTTTAAATGAAGACTTACTATCcttgtgtgatatttattttgaggCCAAATATAACCAATCATGAAACCATCCCTAGAGATATCGTCATTATAATACAGTTTTAGAAGACCTCATCAATTGCAGTGTTCACTTCGTTGTCTGAGTGGCTTCAAAAGTAGGTGAAGATTATGTTGAACACGTTTAGCATTTGAAATCAGATCATCTCCATTGTCTTGAGAACTAGTTTGGTCTTAAGAAATTGTAGCTTATGTTGTTTTGGGGGACTAGAGAGTACAGGCTTCTatgcaattcagtttttttggtTGACTCGACTGAAAAACTACAGGTTTCAGTatcataatgcatttaatcGACGCGTACTTTTATATCGTATCGTTTGATTTGAATCAAATTTTTGGTTTCATCATGGCTAAGCTCTGTAGAGTAGAAAGTGCTGTATGATTTcagtatttcaaaatgtttgacgTTTATTCATTTACGGTTTAGAGATGCTCGTATGGTTATACGGTGTCTTTTTGGAATCTGGATTTTCATTTTCCTAATGCCAGTGTGCAGTCTTTGATCTCAGTCATTTTTCTCCCTCATTTTTAAAAGGCTATCAGGTCGCAGAGGTTATGATGAAATATCTTGAAGGTTTGGTGCTCTTGtgttctcattttaattttgtgtctTTGCTCCATGTACAAGTTCAGTTTCACATAAGGCTCCTACAGTCTGAGAGTTGAAATGTAACTTTCTCAATCCACATGTTGAAAAGCCTTTcatgacaaataataaaaaaaatgttttgaaa

Function

symbol description
ubac1 Predicted to be involved in protein ubiquitination. Predicted to be located in cytoplasm. Orthologous to human UBAC1 (UBA domain containing 1).

NR:

description
PREDICTED: ubiquitin-associated domain-containing protein 1

GO: NA

KEGG:

id description
K12174 KPC2, UBAC1; Kip1 ubiquitination-promoting complex protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239697.1 True 4075 mRNA 0.42 10 18953377 18961721

Neighbor

gene id symbol gene type direction distance location
pomt1 LOC107720285,LOC107699719,LOC107587516,LOC107756274,LOC107555474,LOC107703250 coding upstream 31862 18914683 ~ 18921515 (+)
LOC122345689 NA coding upstream 39297 18900511 ~ 18914080 (+)
gcnt4a LOC107699693,LOC107720226,LOC107587561,LOC107703224,LOC107555473,LOC107756273 coding upstream 62071 18890017 ~ 18891306 (+)
LOC122345996 NA coding upstream 63442 18885057 ~ 18889935 (+)
ankrd31 LOC107699692,LOC107587543,LOC107720237 coding upstream 68492 18879039 ~ 18884885 (+)
rasgrf2b rasgrf2b,rasgrf2,LOC107720279,LOC107756301,LOC107703251,LOC108423655 coding downstream 53590 19015311 ~ 19068269 (+)
ckmt2b ckmt2,ckmt2b,LOC107720280 coding downstream 107184 19068905 ~ 19074630 (+)
tent2 LOC107720275,LOC107699727,LOC107587508,LOC107756276,LOC107703258 coding downstream 196138 19157859 ~ 19164155 (+)
cmya5 cmya5,LOC107699728,LOC107720274,LOC107703257,LOC107555495,LOC107756304 coding downstream 202796 19164517 ~ 19177886 (+)
thbs4a thbs4,thbs4a,LOC107703260,LOC107555496,LOC107756306,LOC107720209 coding downstream 222287 19184008 ~ 19197620 (+)
G37620 NA non-coding upstream 26375 18925437 ~ 18927002 (+)
G37619 NA non-coding upstream 27944 18925210 ~ 18925433 (+)
G37618 NA non-coding upstream 28701 18923302 ~ 18924676 (+)
G37540 NA non-coding upstream 203322 18678596 ~ 18750055 (+)
G37497 NA non-coding upstream 563311 18373499 ~ 18390066 (+)
G37734 NA non-coding downstream 326295 19288016 ~ 19288328 (+)
G37843 NA non-coding downstream 632349 19594070 ~ 19647075 (+)
G37951 NA non-coding downstream 797990 19759711 ~ 19760204 (+)
G37956 NA non-coding downstream 832722 19794443 ~ 19867398 (+)
G37958 LOC107745529,LOC107672542,LOC107720246,LOC107552607 non-coding downstream 911521 19873242 ~ 19874144 (+)
G37626 LOC107720210 other upstream 12482 18938813 ~ 18940895 (+)
arsk arsk,LOC107703223,LOC107720292,LOC107756297 other upstream 105703 18842819 ~ 18847674 (+)
LOC122345691 NA other upstream 1425933 17526024 ~ 17527444 (+)
LOC122344991 camsap1b,LOC107587696,LOC107672541,LOC107552625,LOC107720249,LOC107745551 other upstream 1580518 17364849 ~ 17372859 (+)
G37228 ncor2,LOC107742750 other upstream 2391636 16486620 ~ 16561741 (+)
msh3 msh3,LOC107720281 other downstream 601 18962322 ~ 19014100 (+)
nrarpb nrarpb,nrarpa,nrarp,LOC108255347,LOC107595556 other downstream 745567 19707288 ~ 19710070 (+)
col27a1b col27a1b,col27a1,LOC107699687,LOC107720196,LOC107552608,LOC107731038,LOC107720245,LOC107672548,LOC107587699 other downstream 1005856 19967577 ~ 20035380 (+)
lix1 lix1,LOC107552634,LOC107699708,LOC107587723,LOC107672536 other downstream 1181562 20143283 ~ 20151686 (+)
G38092 LOC107699781,LOC107552636,LOC107587661,LOC107672574 other downstream 1223314 20185035 ~ 20513916 (+)

Expression


Co-expression Network