c5h9orf78 (zgc:103692,cunh9orf78,LOC107587408,LOC107726294,LOC107710755,LOC107691020,LOC107596954)


Basic Information

Item Value
gene id c5h9orf78
gene name zgc:103692,cunh9orf78,LOC107587408,LOC107726294,LOC107710755,LOC107691020,LOC107596954
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 6943365 ~ 6945577 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239749.1
AAGTTTCGGGAAACGCGAGAAAAGAAGCGGTCCGTCGATGAACGCGGACCGCCGACGTTGCGTACAGACTGTGAAAAATAAACGTTAAATAATtcgagtgttttgttttttttaaatcatgccGCCAGGTAAGAATTTTAGGAGGAGGAAGGAGGAATCGTCCGACGAGGAAGACGATGAGACAAAAGCCGTGGTCAGgtcCAAATTGGATGAAGCCAAGGAGCTCCAAAATTTACGAAGAAGGCAGCATGGAGTAAGCATTGCAACGTTACTTGTTGGGGAGAAGCTTCCTTTGGAGGCTGAGCTTGagGACGACCCGTTCAAACTGAAGACCGGAGGTGTCGTCGACATGAAGAAAGTAAAAGACAGAAATCGAGACATGACAGCAGACGAAAATGACCTGAATCTTGGTACCTCCTTTTCTGCTGAGACTAACAGACGAGATGAAGATGCAGACATGATGAAGTACATCGAGACcgaattaaagaaaaagaaaggcatGGTGGAGGCGGAAGAGCTGAAGGTGAAGGTGAAGAATCCAGAGGACCTCCTGTATGAGCTTCCAGAAAGCATCCGTGTCAGTTCTGCCAAAAAGACAGAAGAGATGTTGTCCAATCAGATGCTGAGTGGAATCCCGGAGGTGGATCTGGGGATAGatgcaaaaataaagaacatCATCAGTACAGAAGAAGCAAAAGCAAAGCTACTTGCTGAGCAGAGGAATAAAAAGAAGGACAGCGGGACCTCTTTTGTTCCCACCAACATTGCTGTGAATTACGTCCAGCATAATCGCTTTTATCACGAGGATGTAAACGCTCCCCAGAGACGACACAGAGAAGAACCCAAAGCCAGGCCACTACGAGTAGGAGACACTGAGAAGCCAGTAGCTGAGACTTCACCACCCAATTATCGCAAGAGGCCAAATAACGAGAAGGCCACTGATGACTACCACTATGAGAAATTCAAGAAGATGAACCGGCGATATTAAACCTCCaccatcacttttttttttcccgtgaATGaaagatgtaaatatttttactgtatttaagtgTTCATAGTTTGCATGCAgtcataaacattttacaataaaactcCCCCCAAAACACTTAATCTTTGCAAATTTTATAAAACGGAACATTGTGTCCAGTGCAGCATGTTAAAGCATTATTATGTGCGCGTTTCGGTCTATAGAACGATCCGTTCAACAGAATTGATTTGTGACTTGATATTAATgaaactttgttttattaaaggttatttttattCTACAGACTTTGCTAAcgaaataaagtaatattataaCCTC

Function

symbol description
zgc:103692 Predicted to be part of spliceosomal complex. Orthologous to human C9orf78 (chromosome 9 open reading frame 78).

NR:

description
CI078 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239749.1 True 1309 mRNA 0.42 9 6943365 6945577

Neighbor

gene id symbol gene type direction distance location
garnl3 garnl3,si:ch211-182d3.1,LOC107700942,LOC107693837,LOC107710757 coding upstream 27952 6857879 ~ 6915413 (+)
zgc:63972 zgc:63972,LOC107710753,LOC107598209,LOC107726290,LOC107587483,LOC107700896 coding upstream 295005 6639247 ~ 6648360 (+)
fibcd1b fibcd1,LOC107739453,LOC108428067,LOC107693814,LOC107596897,LOC105015243,LOC107700935 coding upstream 351785 6522536 ~ 6591580 (+)
arhgef28a arhgef28,LOC107718644,LOC107596821,LOC107757522 coding upstream 780880 6105795 ~ 6162485 (+)
btf3 btf3,LOC107655933 coding upstream 847349 6092247 ~ 6096016 (+)
rpl7a rpl7a,LOC107691022,LOC107596970,LOC107726288,LOC107693850,LOC100194725 coding downstream 3741 6949318 ~ 6952114 (+)
LOC122346228 NA coding downstream 4322 6949899 ~ 6949965 (+)
LOC122346219 NA coding downstream 4634 6950211 ~ 6950281 (+)
LOC122346218 NA coding downstream 5109 6950686 ~ 6950758 (+)
LOC122346226 NA coding downstream 5713 6951290 ~ 6951366 (+)
G33712 NA non-coding upstream 12580 6929647 ~ 6930785 (+)
G33708 NA non-coding upstream 21726 6920745 ~ 6921639 (+)
G33665 NA non-coding upstream 448835 6475701 ~ 6494530 (+)
G33619 NA non-coding upstream 707724 6232297 ~ 6235641 (+)
G33506 NA non-coding upstream 766710 6174621 ~ 6176655 (+)
G33844 NA non-coding downstream 188717 7134294 ~ 7134884 (+)
G33850 NA non-coding downstream 189330 7134907 ~ 7135122 (+)
G33852 NA non-coding downstream 199483 7145060 ~ 7146006 (+)
G33853 LOC107723360,LOC107740932,LOC107691030,LOC107597084,LOC107587366 non-coding downstream 201458 7147035 ~ 7147616 (+)
G33857 NA non-coding downstream 221031 7166608 ~ 7168142 (+)
si:dkey-34e4.1 si:dkey-34e4.1,LOC107700938,LOC107596916,LOC107710760,LOC107587412 other upstream 117999 6793365 ~ 6825366 (+)
dab2ipb dab2ipb,LOC107693836,LOC107710761,LOC107700936,LOC107726296 other upstream 180557 6617276 ~ 6762808 (+)
G33664 NA other upstream 451379 6473347 ~ 6491986 (+)
hexb hexb,LOC107718643,LOC107700931,LOC107655935,LOC107570862 other upstream 688025 6247795 ~ 6255340 (+)
G33494 foxd1,LOC107598200,LOC107718663,LOC107700903,LOC107596217,LOC107757501 other upstream 854803 6087262 ~ 6088562 (+)
kank1b kank1b,LOC107730999,LOC107691025,LOC107597012,LOC107587402 other downstream 32971 6978548 ~ 6988772 (+)
gpr107 LOC107723348,LOC107691037,LOC107597176,LOC107693862,LOC107740935 other downstream 340991 7286568 ~ 7300729 (+)
G33878 c9,LOC107691041 other downstream 392891 7338468 ~ 7344078 (+)
LOC122345182 ns:zf-e68,myhz1.2,myhz1.1,myhz2,myhc4,LOC107598006,LOC103370545,LOC107723326 other downstream 428031 7373608 ~ 7449497 (+)
G33891 myhz1.2,myhz2,myhz1.1,ns:zf-e68,myhc4,mmyhl1,myhb,mmyhl2,LOC107723326,LOC105016875,LOC105016873,LOC106565367,LOC107088603,LOC107384188,LOC107093413,LOC103461378,LOC108241321,LOC107083053,LOC107083052,LOC107378336,LOC106938339,LOC106596646,LOC106596400,LOC106585883,LOC106597527,LOC106594844,LOC108261437,LOC106595486,LOC106598139,LOC108261508,LOC103379498,LOC103379499,LOC108444093,LOC101482140,LOC107660779,LOC108443910,LOC108415768 other downstream 474563 7420140 ~ 7520241 (+)

Expression


Co-expression Network