rpl7a (rpl7a,LOC107691022,LOC107596970,LOC107726288,LOC107693850,LOC100194725)


Basic Information

Item Value
gene id rpl7a
gene name rpl7a,LOC107691022,LOC107596970,LOC107726288,LOC107693850,LOC100194725
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 6949318 ~ 6952114 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239750.1
tcttcctttccgTCTGAACCAACATGCCTAAGGGAAAAAAGGCTAAGGGGAAGAAGGTGGCACCAGCCCCTTCAGTGGCCAAGAAGCATGAGGCCAAGAAAGTCGTGAATCCCCTGTTTGAGAAGAGGCCCAAGAACTTTGGCATTGGTCAAGACATCCAGCCGAAGAGGGATCTGACCCAATTCGTGAAATGGCCACGTTACGTCCGGCTGCAGCGCCAGCGGGCCATCCTCTATAAGCGTCTGAAGGTTCCCCCTGCAATCAACCAGTTCTCCCAGGCTCTGGACCGCCAGACCGCTACCCAGCTGTTCAAGCTGGCCCACAAGTACAGGCCCGAGACCAAGCATGAGAAGAAACGGAGACTGCTGGCTCGTGCTGAACAGAAGGCTGCTGGAAAAGGCGACCAGCCCACCAAGAGGCCACCAGTCCTCCGCGCAGGTGTGAACACAGTAACCACACTAGTGGAGAGCAAGAAGGCACAGCTGGTCGTTATCGCTCACGATGTGGATCCCATTGAGCTGGTGGTGTTCCTGCCTGCTTTGTGCCGTAAGATGGGTGTCCCCTACTGCATCGTCAAGGGCAAGGCTAGACTGGGCAGACTAGTGCACAGAAAGACCTGCACCTCTCTTGCCTTCACACAGACCAACCCTGAAGACAAGGCAGCTCTTGCTAAGCTGGTGGAGGCCATCAAGACCAACTACAATGACAGATACGAGGAGATCCGTCGTCACTGGGGAGGCAATGTCCTGGGTCCCAAGTCGACTGCTCGCATTGCTAAACTTGAGAAAGCAAAGGCCAAGGAGCTGGCTACTAAACTGGGTTGAGCTgtcttgtttaataataaaaaattatccCACAAA

Function

symbol description
rpl7a Predicted to enable RNA binding activity. Predicted to be involved in maturation of LSU-rRNA. Predicted to act upstream of or within ribosome biogenesis. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in brain; eye; immature eye; neural plate; and presumptive neural plate. Orthologous to human RPL7A (ribosomal protein L7a).

NR:

description
60S ribosomal protein L7a

GO:

id name namespace
GO:0042254 ribosome biogenesis biological_process
GO:0005840 ribosome cellular_component

KEGG:

id description
K02936 RP-L7Ae, RPL7A; large subunit ribosomal protein L7Ae

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239750.1 True 860 mRNA 0.54 8 6949318 6952114

Neighbor

gene id symbol gene type direction distance location
c5h9orf78 zgc:103692,cunh9orf78,LOC107587408,LOC107726294,LOC107710755,LOC107691020,LOC107596954 coding upstream 3741 6943365 ~ 6945577 (+)
garnl3 garnl3,si:ch211-182d3.1,LOC107700942,LOC107693837,LOC107710757 coding upstream 33905 6857879 ~ 6915413 (+)
zgc:63972 zgc:63972,LOC107710753,LOC107598209,LOC107726290,LOC107587483,LOC107700896 coding upstream 300958 6639247 ~ 6648360 (+)
fibcd1b fibcd1,LOC107739453,LOC108428067,LOC107693814,LOC107596897,LOC105015243,LOC107700935 coding upstream 357738 6522536 ~ 6591580 (+)
arhgef28a arhgef28,LOC107718644,LOC107596821,LOC107757522 coding upstream 786833 6105795 ~ 6162485 (+)
surf6 surf6 coding downstream 2715 6954829 ~ 6957123 (+)
kyat1 ccbl1,LOC107731000,LOC107691018,LOC107596979,LOC107726298,LOC107587404,LOC108431029 coding downstream 5159 6957273 ~ 6962389 (+)
ifitm1 NA coding downstream 11823 6963937 ~ 6964497 (+)
prkaa1 prkaa1,LOC107730998,LOC107693840,LOC107691024,LOC107597029,LOC107726302 coding downstream 13035 6965149 ~ 6977675 (+)
LOC122344685 LOC107691026,LOC107598247,LOC107587401,LOC107693829,LOC100001344 coding downstream 40108 6992222 ~ 6999388 (+)
G33712 NA non-coding upstream 18533 6929647 ~ 6930785 (+)
G33708 NA non-coding upstream 27679 6920745 ~ 6921639 (+)
G33665 NA non-coding upstream 454788 6475701 ~ 6494530 (+)
G33619 NA non-coding upstream 713677 6232297 ~ 6235641 (+)
G33506 NA non-coding upstream 772663 6174621 ~ 6176655 (+)
G33844 NA non-coding downstream 182180 7134294 ~ 7134884 (+)
G33850 NA non-coding downstream 182793 7134907 ~ 7135122 (+)
G33852 NA non-coding downstream 192946 7145060 ~ 7146006 (+)
G33853 LOC107723360,LOC107740932,LOC107691030,LOC107597084,LOC107587366 non-coding downstream 194921 7147035 ~ 7147616 (+)
G33857 NA non-coding downstream 214494 7166608 ~ 7168142 (+)
si:dkey-34e4.1 si:dkey-34e4.1,LOC107700938,LOC107596916,LOC107710760,LOC107587412 other upstream 123952 6793365 ~ 6825366 (+)
dab2ipb dab2ipb,LOC107693836,LOC107710761,LOC107700936,LOC107726296 other upstream 186510 6617276 ~ 6762808 (+)
G33664 NA other upstream 457332 6473347 ~ 6491986 (+)
hexb hexb,LOC107718643,LOC107700931,LOC107655935,LOC107570862 other upstream 693978 6247795 ~ 6255340 (+)
G33494 foxd1,LOC107598200,LOC107718663,LOC107700903,LOC107596217,LOC107757501 other upstream 860756 6087262 ~ 6088562 (+)
kank1b kank1b,LOC107730999,LOC107691025,LOC107597012,LOC107587402 other downstream 26434 6978548 ~ 6988772 (+)
gpr107 LOC107723348,LOC107691037,LOC107597176,LOC107693862,LOC107740935 other downstream 334454 7286568 ~ 7300729 (+)
G33878 c9,LOC107691041 other downstream 386354 7338468 ~ 7344078 (+)
LOC122345182 ns:zf-e68,myhz1.2,myhz1.1,myhz2,myhc4,LOC107598006,LOC103370545,LOC107723326 other downstream 421494 7373608 ~ 7449497 (+)
G33891 myhz1.2,myhz2,myhz1.1,ns:zf-e68,myhc4,mmyhl1,myhb,mmyhl2,LOC107723326,LOC105016875,LOC105016873,LOC106565367,LOC107088603,LOC107384188,LOC107093413,LOC103461378,LOC108241321,LOC107083053,LOC107083052,LOC107378336,LOC106938339,LOC106596646,LOC106596400,LOC106585883,LOC106597527,LOC106594844,LOC108261437,LOC106595486,LOC106598139,LOC108261508,LOC103379498,LOC103379499,LOC108444093,LOC101482140,LOC107660779,LOC108443910,LOC108415768 other downstream 468026 7420140 ~ 7520241 (+)

Expression


Co-expression Network