lmx1ba (lmx1b,lmx1ba,LOC107591520,LOC107668223,LOC107725103,LOC107654328,LOC107557569,LOC105902565)


Basic Information

Item Value
gene id lmx1ba
gene name lmx1b,lmx1ba,LOC107591520,LOC107668223,LOC107725103,LOC107654328,LOC107557569,LOC105902565
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 31895803 ~ 31934473 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239757.1
CTGTTTGTCCTCAGAACATCTGGTGTTGTAGGCGGTTCCGTCGCGATCCAGCACCAATAGCATCCCGTGCGGTCGAGGAGAATGACGCGATCGGAGGGAGTCGAGCAGCTCCACGGACTCCTCAAGAGCAGCGCGGGACTCGTGAACACTCGGCGAGGAGCTCGCGGGATTACCGGACCCCTGACACCGAGGCCGAGAGACGCgctttacttttagtttgtgcCTCGTCTTTCTGGACACCGCCACAGGTCGGCAGAGGCTCGCTGTCCTGCGGCTTTTCGGAGATGTTGGACGGAATCAAAATCGAAGATCAGTTCAGGAGTGGAGCGGAGTCTCTGGGAGTGATGCTGGgttCAGACTGCATgcatcagagtgtgtgtgaaggcTGTCACAGACCGATCTCGGACCGCTTCCTCCTGCGCGTGAACGACGGCTCGTGGCACGAGGAGTGTTTGCAGTGCTCGGTGTGTCAGCAGCTTCTCACCATGAGCTGCTACTCCAGAGATCACAAACTCTACTGCAAACACGACTACCAACAGTTGTTTGCGGCCAAATGCAGCGGCTGTCTGGAAAAGATCTCTCCCACAGAGTTTGTGATGCGCGCACTAGAAAGTGTGTACCACCTAGGCTGCTTCTGCTGCTGCGTGTGCGAGCGTCAGCTGTGTAAAGGAGACGAGTTCGTCCTGAAGGAGGGACAGCTGCTGTGCAAGAACGACTACGAGAGAGAGAAGGACCTGCTGCACTCGGTCAGCCCGGACATGTCTGACTCCGAGAAAAGCGAGGACGAAGATCTGGACGTGAAGCCCGAGAAAGGAGCAGGAGGTCAGGGGAAAGGCGGAGACGACGGCAAAGACCCGCGGAGACCCAAGAGACCTCGCACCATCCTCACCACCCAGCAGCGGCGCGCCTTCAAGGCCTCCTTTGAGGTGTCGTCCAAACCCTGCAGAAAGGTCAGAGAGACGCTGGCAGCTGAGACTGGTCTGAGTGTTCGAGTCGTCCAGGTGTGGTTTCAGAACCAAAGAGCAAAGATGAAGAAATTAGCACGcagacaacagcagcagcaagaGCAGCAAAACTCTCAGAGACTCGGACAAgACGTGATCTCAAGCCGAATGGAGACCCTGATGAACTCTTACACGCCGCTGGCTCCGCCTCCTCAGCATCAGCTAGTGTCCATGGAGCCGGGCGGATACAGCACAGACCCGTTCCAGCAGGGCCTGACCCCTCCGCAGATGCCCGGAGATCACATGAATCCATACGGAACCGACTCGATTTTCCACGACATCGACAGCGACACGTCTCTGACCAGCCTGAGCGACTGCTTCATGGCCGCGTCGGAAGCCGGGTCCCTGCAGAGCCGCGTGGGGAACCCCATCGACCGCCTCTACTCCATGCAGAGCTCCTACTTCGCCTCCTGAAACCAAACCCCGAGACTAAACCCCCCACGAAAAAACCACCTGACAGCCAGGCCATCCAGAATCCCGAGGACaagaaaaccaaaccaaaccaaacggCTCCCGCGGCAGATGAGGAAGGAGGCCTCGAGTCTGTCCAGGTTCAGAGAAGCGCGTGAGGAGACGGGATGAGATGGTCTTCATCTAGACttgtagaaaagaaaaaacaaaacaaaaacctaacCAAATATTCCTAGAGGAGCTACGGGAACGAGTTTAGACCATAAATAGACAGATGCAATACATGCAAAAAGTTGGAAACACTGCGTACGGTACAACAACGTTGCTGTTGAACACGGATCTCAAATGTATGAAAAGAAACTGGAGCCGAAACAGCTGTGTGTTGATAAAGACGACTGGCTATTTATTACGTACATGTGCCAATTAAACCTGCAAAGCTTTATTTAAGACGAATTGTGTTAGAGTAAGTACCATAAGCATCTTCATGTAAGTCCCCGGGAGAGAGCGTAGTATTATACCGTTGATGTTTAAagatgtatatgttttatttcgCTGTGCTATTTATTTGTCGTCGGCATTCTTGGACGCTGTAGAGGATGCAGTTTTTTGCTCAAACTTGCTAAACTTACCAAAGTTTGTTGgtactaaaaataaagaaatgttaacaaa

Function

symbol description
lmx1ba Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within animal organ development and glutamatergic neuron differentiation. Predicted to be active in nucleus. Is expressed in several structures, including axis; midbrain hindbrain boundary neural rod; midbrain neural rod; nervous system; and periocular mesenchyme. Human ortholog(s) of this gene implicated in focal segmental glomerulosclerosis and nail-patella syndrome. Orthologous to human LMX1B (LIM homeobox transcription factor 1 beta).
lmx1b Enables DNA-binding transcription factor activity and sequence-specific double-stranded DNA binding activity. Involved in regulation of transcription, DNA-templated. Located in nucleus. Implicated in focal segmental glomerulosclerosis and nail-patella syndrome.

NR:

description
PREDICTED: LIM/homeobox protein LMX-1.2-like

GO:

id name namespace
GO:0061386 closure of optic fissure biological_process
GO:0048752 semicircular canal morphogenesis biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060117 auditory receptor cell development biological_process
GO:0021592 fourth ventricle development biological_process
GO:0032474 otolith morphogenesis biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09371 LMX1; LIM homeobox transcription factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239757.1 True 2084 mRNA 0.53 8 31895803 31934473

Neighbor

gene id symbol gene type direction distance location
zbtb43 zbtb43,LOC107715540,LOC107668077,LOC107725105,LOC107654302 coding downstream 30913 31859896 ~ 31864890 (-)
LOC122345662 ralgps1,LOC107666038,LOC107557582,LOC107725136,LOC107654291 coding downstream 38201 31759936 ~ 31857602 (-)
zgc:153704 zgc:153704,LOC107591480,LOC107562205,LOC107725160,LOC107665866,LOC107654290 coding downstream 159852 31733458 ~ 31735951 (-)
srrt srrt,LOC107665251,LOC107591506,LOC107725089,LOC107734366 coding downstream 212223 31674315 ~ 31683580 (-)
LOC122345089 NA coding downstream 224195 31668017 ~ 31671608 (-)
mvb12ba mvb12ba,mvb12b,LOC107591487,LOC107666228,LOC107654329,LOC107725155,LOC107557586 coding upstream 9382 31943855 ~ 31960848 (-)
pbx3a pbx3a,LOC107668307,LOC107591489,LOC107725095,LOC107654303,LOC107715538,LOC107550583 coding upstream 45414 31979887 ~ 32016468 (-)
ajm1 zmp:0000000794,cunh9orf172,LOC107725135,LOC107666534,LOC107557588,LOC107715543,LOC107654331 coding upstream 115179 32049652 ~ 32067214 (-)
rabl6a rabl6a,LOC108427817,LOC107725084,LOC107667101,LOC105021747 coding upstream 148087 32082560 ~ 32103786 (-)
zgc:73226 zgc:73226,LOC107704030,LOC107725129,LOC107594543,LOC107557574 coding upstream 366886 32301359 ~ 32310140 (-)
G41051 NA non-coding downstream 97535 31797709 ~ 31798268 (-)
G41037 NA non-coding downstream 163544 31712351 ~ 31732259 (-)
G41023 NA non-coding downstream 193985 31655583 ~ 31701818 (-)
G41064 NA non-coding upstream 41463 31975936 ~ 31977051 (-)
G41065 NA non-coding upstream 43241 31977714 ~ 31978466 (-)
G41177 NA non-coding upstream 451654 32386127 ~ 32386472 (-)
G41198 NA non-coding upstream 504146 32438619 ~ 32439145 (-)
G41191 NA non-coding upstream 509809 32444282 ~ 32445281 (-)
G41035 LOC107734367,LOC107665727,LOC107725151,LOC107591476,LOC107654325,LOC563292 other downstream 172897 31721270 ~ 31722906 (-)
apooa apoo other downstream 184066 31702453 ~ 31711737 (-)
LOC122344987 LOC107591496,LOC107663763,LOC107725109,LOC107734348,LOC107563429,LOC107654309 other downstream 545354 31331349 ~ 31350449 (-)
G40752 hspa5,LOC107686379,LOC107743071,LOC107687227,LOC107567952,LOC107734417,LOC107734415,LOC107686377 other downstream 1069445 30817732 ~ 30826358 (-)
G40713 lzts3,LOC107567954,LOC107687254,LOC107574519,LOC795227,LOC107665914 other downstream 1103084 30789633 ~ 30792719 (-)
tnca zmp:0000000846,LOC107715542,LOC107557573,LOC107591511,LOC102306937,LOC107725145 other upstream 179423 32113896 ~ 32174064 (-)
LOC122346090 LOC107704013,LOC107725152,LOC107748063,LOC107654332,LOC107557589,LOC107594564 other upstream 279558 32214031 ~ 32293782 (-)
LOC122346085 LOC107748069,LOC107679343,LOC107594586 other upstream 349064 32283537 ~ 32314631 (-)
LOC122345737 egflam,LOC107704151,LOC107667876,LOC107725173,LOC107725080,LOC107564362 other upstream 803944 32738417 ~ 32757869 (-)

Expression


Co-expression Network