pnpla7b (pnpla7b,pnpla7,LOC107744433,LOC107673412,LOC107599921)


Basic Information

Item Value
gene id pnpla7b
gene name pnpla7b,pnpla7,LOC107744433,LOC107673412,LOC107599921
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 10533187 ~ 10546933 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239815.1
TTTTTTGGAAGGATCTGGCAACGCGTGTAATCGGTAGGAGTACTGACATTGTGAATGGAATCCCTGGGAGACTCCAAAGTGCATTAAGAGTGCCAAAAACAGTTTGGAAACGCCGTTCAGAAGATATGGAAGAAAAAGAACAAGATgatatatgcagtatatttcCGGCAGTGCTGCCATCTGGGACTGAGATCAAGGCTCGAGTGCAGCACTTCATAGAGGATCAGTTACAGAGTACCATGtgGACTGGTGTGCTGATTGGAGCTGCTGTTGCGGTTTCGTTCATTAGTATTGTTGCCTTTTTTCTGCACAGAAGATACAAATTGGGAGAAGAGCAAGCTGAAGGTCCTAAATACCGTTTTAGAAAAAGAGACAAAGTGATGTTTTATGGCAGGAAGATAATGAGAAAGGTCCAGACCTTATCCTCACCAGCCACCTCAGGTCCGGTATCTCAAAAGCGattcagaaaaagaacaaaagttcTATCAATAGCTCGCAAAATTCTACGCATACGAAGAGAGCCACCAGCCCTGCAGCCAAAAGAGCCTCCGCCTTCGCTCTTGGAAGCAGATTTGACTGAATTCGACATGCAGAACTCCCACCTGCCCTCTGAGGTCCTGTATATGCTGAAAAACGTGAGGGTTCTGGGTCACTTTGAAAAGCCTCTGTTCCTGGAGCTGTGTCGGCACATGGTGTTTGTGCAGCTACAGCAAGGGGAAGGATTATTTCGCCCAGGAGACACTGATGACAGCATCTTTGTAGTGCAGGATGGGCGTCTTGATCTGTGTATCCATGAGAATGATGGGACTGAGGTTGTGGTGAAGCATGTTTTGCCTGGAGACAGTGTTCACAGTCTGCTCAGCATCCTCGATGTCATCACTGGATATCCAGCTCCCTACAAAACTGTCTCAGCCAGAGCAGCAGCCCCAACTACTGTTCTCCGCCTTCCTGCACAGGCTTTCCAGTCCGTCTTTGAAAAATACCCAGAGACCCTAGTCAGAGTTATTCAGataaTCATGGTGCGTCTTCAGAGAGTTACCTTTCTTGCCCTTCACAACTATCTAGGCCTGACCACGGAACTTTTCAATAAGGAAAGTCAAGCTGTTCCGCTGGTCTCAGTGGCCAGTGCTGTAGGAGAAGGCGCTCCAGGCAAAGGGCTGCGCAGACACTCGCAGACAACTGAGGACGTTTCTGAAAAGGTCCAGCAAAGGTCAACAGACCGTTACAGTGACACAAGAGGAGAGgatgcttGGAAGCATCGCACAGAAAGTCCTACTGCTTTATTCAGAAAGTCTCGTTCACTGTCAACAccttttgacggcacccatgCTGGTTCTCCTGACCGCAATATGGCCTTTGACAGAGCAAGCATTACGAAAGAGGAAGCCCCTACAAGTCCTATTGCCGTTCCTAAATACGTAAGGAAGAAGTCGGTGACAATGCAGCATTCTCCTTCGGCTGTGTTTCACTACTCAGACACTGGGGGGCATTCCAGCCACATCCACCATTGTAAAGTTAATGCCATTTTTCAAGCTGCCAAGAAGGACTTGCTTAAAATCATTCAGCTTCAGGACACCAGTCTTCTGGAAGATAGGGTGACTCTGAGACAAGTAAAAGCGGGCTCTATCGTTGCAAGCGAGGGAGATCAGGATGTGAGCGTGCAGTTTGTCATCTCAGGAACTCTCCATGTGTACCAGAGACTGATTGACAGAGAGGAAGAAACATGTCTTTTTGTGGCTCACCCTGGAGAGATGGTGGGCCACCTGGCTGTTCTCACAGGAGAGCCTCTCATCTTTTCTGTGCGTGCCCACCGTGACTGCTGCTTCCTGTCTATCTCCAAAACACACTTCTATGAGATAATGCGTGCCGAGCCTAGGATGGTATTAAATGTGGCTCACACAGTGGTACGGAGGGTCTCTTCCTTTGTCCGACAGATTGACTTTGCTCTGGACTGGATGGCACTGGAGGCCGGTAGGGCTGTCTATAGACAGGGAGATAAGTCAGATAGCACTTTCATTGTCCTGAGTGGACGTCTGCGTTCCGTCATCATGAAGGATGATGGGAAAAAAGAGCTTGCTGGAGAGTATGGTCGGGGGGATCTCATTGGTGTGGTGGAAGCTTTGACTCATTTAAACAGAGCAACCACAGTCCATGCAGTCCGGGACTCTGAACTGGCCAAACTGCCCGAAGGAGCTCTTAACTCTATTAAGAGGAAATACCCACAGGTTGTGACTCGCCTGATTCATCTTCTTGGGCAGAAAATCTTGGGCAACATGCAGCAAGTGAATGGTCCACTATCAGTGCGCAGTCTGGGTTTTCACACCCCAAGCAGTAAGTGGGACGCAGGTAACCCAGCTGCCAATCTGTCTACGGTCGCCATACTGCCTGTTTCTGAGGAGGTGCCTTTGACTGCCTTCACACTGGAGCTGCAGCATGCTCTCAGTGCTATTGGCCCCACTTTGCTCCTAACCAGTGACATCATCAGACAGCGCCTGGGTGTTGCAGCCTTGGATAGTGTTCATGAGTATCGTTTGTCAAGCTGGTTGGGTCAACAAGAGGACATCCACCGGATTGTTCTGTATCAGTCGGATAGTTCTCTGACTCCTTGGAATCAGCGTTGCATCAGACAGGCAGACTGCATCATTATAGTGGGTGTGGGTGAACAGGAGCCCACTGTGGGAGAGCTAGAGCGAATGCTAGAGAGCAGTGCTGTGAGAGCTCAGAAGCAGCTGGTCCTGTTGCACCGTGAGGACGGGCCGCCGCCAAGAGGAACAGCAGAATGGCTCAACATGCGCAGCTGGATCTCTAGACATCTGCACCTGTCCTGTCCCCACAGGGTCTTCTCCAGGAGGAGCCTGCCTAAACTGAGAGAGATGTATCAGCGGGTATTTGAGAAGCCTCCCGACCGCCATTCTGACTTCTCTCGTCTGGCTCGGATCCTGACAGGCAACGCTATTGCTCTGGTGCTTGGAGGAGGGGGGGCCAGAGGCTGCTCTCAGGTGGGCATCATTCGGGCGTTGAGTGAGGCAGGGATCCCTGTGGATCTGATTGGTGGCACTTCCATTGGTTCGTTGATAGGAGCGCTCTATGCTGAAGAGCGAAGCGTCAGTCGTATGACGGTTAGGGCACGCCAGTGGGCCATGGATTTTGGATCCATATTTAAGAAGATCACAGACCTGACGTACCCAGTGACGTCCATGTTTACTGGAGCATCATTTAACTCCAGCATTAGTGGAATCTTCCAGGACAAACAGATTGAGGACCTTTGGATCCCTTATTTCAACATTACCACAGACATCACTGCCTCCTCCATGAGAGTGAACACTGATGGTTCTCTGTGGAGATATGTGCGTGCCAGCATGTCTCTCTCTGGGTACCTTCCCCCTCTGTGTGACCCTAAAGATGGACACTTGCTCATGGATGGAGGCTACATCAATAACCTGCCTGCTGACACAGCTCGTTCAATGGGTGCCAAGTTGGTGATTGCCGTTGATGTTGGCAGTCAGGATGAAACCGATCTGACTAATTATGGAGACTCTTTATCTGGATGGTGGCTGCTATGGAAACGCTTGAACCCTCTGTCAGAAAAAGTAAAGGTGTTGAACATGGCAGAGATCCAGACCCGTCTGGCTTATGTGTGTTCTGTGCGTCAGCTAGAGATGGTAAAAGACAGTGACTACTGCGAGTACCTGCGACCGCCCATCGATCGCTATGGCACACTGGACTTTGGCAAATTTGATGAGATTGCTGACGTTGGTTACCAGCATGGGAAGACCGTGTTTGATGTGTGGTGTCGGAGCGGGGTGAGGGAGACGATGCTTAAAGACCAGCATCAAGAGGAGTTCCACAAGTCCAGGAGCACTAATGTGACCTGTCCCAATGCTTCTTTCACTGATCTGGCTGAAATAGTGTCCAGAATAGAGCCAGTGACGCAGGCCGTGATGGATGaggagtcCGAGTGCCAGACAGACTATGATGAAGATGCAGTGCTATCAGACTTCGATCTGTCCAATCCAAACAGCGAACACAGTGAGCATActgaagatgaagaggatgagACAGCAGATACAGCCGATACAGATGATGAAATGGAGATCAGGACAAGGAGACATCGAATATTCAAAAACAACAGCCATCATAACACCTGACCTCAAATACTTTTcagagttatttttttcttaagcaACATTATcagtattaaaattaagttactTGAATGGGTAGAAACTAACAGGTACTTATTAGAACAAGCAAGCATTATGCTACATTAgaacacaatattattttttgtaaggGATTGCTAACAGAACACTAAGCTGTCAAAGTAGTAACAATTGCTAAAAAAGAAACTGTGGTTTTCTTGcctttacttttagtttttttcaaaaagttcaATAATATTTGAAGCccttaacatttcattttcatgcaaGCTGTCAATGCAAGTTCAACACAGTTTATTGTGTGAAACGATAAACTTTTGTGTCTATATTATGCTAAAAAAGTTAACCATAGTTCAGGTGGTTTATAACCTGAAGAGAAGGATGAACTAGTAAACATAATTGAGAGATATTCTGATTTGAGTATTTGTAACCATGTAAATGTTGGTAGATCACTGTATCGAAAGTCATTTTGTTGTGAATTATGAGTGAAGTGTTGATTGAAGCAGCtaacaatgttttaatgtgcTATTTGCCTTATAAAAAATTAACAGTT

Function

symbol description
pnpla7b Predicted to enable lysophospholipase activity. Predicted to act upstream of or within lipid catabolic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human PNPLA7 (patatin like phospholipase domain containing 7).
pnpla7 Predicted to enable lysophospholipase activity. Predicted to be involved in phosphatidylcholine catabolic process. Predicted to be located in endoplasmic reticulum membrane and lipid droplet. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum.

NR:

description
patatin-like phospholipase domain-containing protein 7

GO: NA

KEGG:

id description
K14676 NTE, NRE; lysophospholipid hydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239815.1 True 4716 mRNA 0.47 36 10533187 10546933

Neighbor

gene id symbol gene type direction distance location
dph7 dph7,LOC107730721,LOC107672791,LOC107744432 coding upstream 2107 10527090 ~ 10531080 (+)
abca2 abca2,LOC107730718 coding upstream 8397 10469676 ~ 10524790 (+)
rorb rorb,LOC107744430,LOC107730723,LOC107599920,LOC107592316 coding upstream 99494 10408635 ~ 10433693 (+)
mfsd3 si:dkey-229d2.4,mfsd3,LOC107744428,LOC107672752,LOC107673419,LOC107599916,LOC107592373 coding upstream 172120 10342197 ~ 10361067 (+)
anxa1a LOC107744429,LOC107599917,LOC107673431,LOC107738289,LOC107592317,LOC107672753 coding upstream 192067 10337223 ~ 10341120 (+)
emid1 emid1,LOC107599927,LOC107744434,LOC107673410,LOC107730716,LOC107672770,LOC107592308 coding downstream 6042 10552975 ~ 10608867 (+)
ewsr1b LOC107599962,LOC107744436,LOC107673396,LOC107592307,LOC107672746 coding downstream 64641 10611574 ~ 10619892 (+)
gas2l1 gas2l1,LOC107673400,LOC107744437,LOC107599929,LOC107592306,LOC107672792,LOC107730708 coding downstream 74724 10621657 ~ 10647143 (+)
ap1b1 ap1b1,LOC107599930 coding downstream 100660 10647593 ~ 10672570 (+)
rasl10a rasl10a,LOC107672696,LOC107744439,LOC107730711,LOC107592305,LOC107599975 coding downstream 127046 10673979 ~ 10687038 (+)
G35043 NA non-coding upstream 199379 10333219 ~ 10333808 (+)
G35042 NA non-coding upstream 202865 10329889 ~ 10330322 (+)
G35041 NA non-coding upstream 205726 10327031 ~ 10327461 (+)
G35040 NA non-coding upstream 206473 10325866 ~ 10326714 (+)
G34959 NA non-coding upstream 241326 10288424 ~ 10291861 (+)
G35081 NA non-coding downstream 288 10547221 ~ 10547625 (+)
G35197 NA non-coding downstream 266524 10813457 ~ 10816301 (+)
G35202 NA non-coding downstream 291079 10838012 ~ 10838367 (+)
G35229 NA non-coding downstream 398123 10945056 ~ 11019192 (+)
G35267 NA non-coding downstream 640321 11187254 ~ 11187694 (+)
fam219ab fam219ab,LOC107744421,LOC107595023,LOC107673386,LOC107752501,LOC107672754,LOC107592322,LOC107673387,LOC107595025,LOC107744422,LOC107592323 other upstream 393454 10064217 ~ 10139733 (+)
si:ch211-102c2.4 NA other upstream 733829 9796381 ~ 9799358 (+)
man1b1b man1b1b,man1b1,LOC107709694,LOC107681241,LOC107560236,LOC107757969,LOC107690671,LOC107587425 other upstream 1661669 8864202 ~ 8871518 (+)
snx19a snx19a,LOC107597619,LOC107681657 other upstream 2227741 8289720 ~ 8305446 (+)
spns3 spns3,LOC107597443,LOC107712368,LOC107664514,LOC107677447,LOC107722774,LOC107587440 other upstream 2522588 8001578 ~ 8010599 (+)
osbp2b si:ch211-106a19.1,LOC107687692,LOC107744438,LOC107726355,LOC107672777,LOC107592367 other downstream 170598 10717531 ~ 10736059 (+)
senp3a senp3a,LOC107744451,LOC107687680,LOC107599939,LOC107672741,LOC107592295,LOC107726393 other downstream 379890 10926823 ~ 10933753 (+)
map7d2a LOC107687666,LOC107592282,LOC107599951,LOC107754729,LOC107726367,LOC107672739 other downstream 499546 11046479 ~ 11064446 (+)
LOC122346180 LOC107597222,LOC107680408,LOC107732624,LOC107592391,LOC107732598,LOC107687664,LOC107747817,LOC107687696 other downstream 589290 11136223 ~ 11150225 (+)
gria3a gria3a,LOC107597231,LOC107672342,LOC107732609,LOC107680378,LOC107733225,LOC107592272 other downstream 719709 11266642 ~ 11303431 (+)

Expression


Co-expression Network