svopb (LOC107723362,LOC107681854,LOC107598053)


Basic Information

Item Value
gene id svopb
gene name LOC107723362,LOC107681854,LOC107598053
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 7558940 ~ 7567263 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239863.1
GACCAAGCCGTTGAGGTTCCTGCTGAGCCACAGGACCACAGCGTCTGTGAAGACCTCCCAGCCTTGACCCTCATGACTGGTGGGTTGATGAGCCCTCACTGTCAGCACAGAGTTCAGCAGCAGAACGCCTGACGATATTTAGCATTCCAGCATAACCTAGTGAAATGAGTGCACTGAAAAGATCATCCCAAGTGGCTTACCAACGCTGGAAAGACACAAAAATCAGCTTTGTGACATCCCGGGCGGATGATAAAAGCGTCCTCACTGTTCATGAGGAGCAGCCTGGGGAAAACGAGCCTAGCAATGAAGGAGTTTCCACTATTAGGGAGCAAGATTTGGAGGACAGCAAGAAAAGAAGCTGTGGAATCTCAGAAACCTTCACTGTGGAAGAAGCAGTTGAGGCTATTGGTTTTGGAAAGTTTCAGTGGAAGCTGTCTATGATAACAGGAGTTGCGTGGATGGCAGATGCTATGGAAATGATGCTCCTCAGTATTGCAACTCCTCAACTGCGCTGTGAGTGGAGGCTCTCCAGCTGGAAAGTGGCTTTTATAACAGCTATAGTGTTCATTGGAATGATGGTCAGCTCCTCGCTTTGGGGGAACATTTCAGACAAGTATGGCCGAAAAGTGTGTTTAATACTGTGCATGCTGTGGACATTGCACTATGGGCTTCTCAGTGCTTTTGCACCTGTTTACAGCTGGATCTTAGTCTTGCGAGGCCTTGTGGGATTTGGCCTAGGAGGAGCCCCTCAGTCAGTGACATTATATACTGAATTCCTCCCAGTGAAATCCAGAGGGACATCCATAATCCTGTTAGGGGTGTTCTGGGCCTTGGGTGCTGTGTTTGAAGTGTTACTAGCCATGATGGTCATGCCCACATTAGGCTGGAAATGGCTGCTAGGTTTCTCCGCCCTTCCTCTAGTTGTCTTTGCTGCCTCCTGCTGTTGGTTACCAGAGAGTGCTAGATTTGATGTACTGAGAGGCAGAGGAGACAAGGCCCTGGACACTTTGAAATATATAGCAGCAGCTAATGGGAGCTCTGTGCCTACTGGAAGACTTATAGCCAACACGCAGACTGATCGCGGGAGGATTACAGATCTCTTTATACCAGAATACCGAAAAACAACGCTCTTAGTCTGGTTTATCTGGTTTTGCAATGCTTTTTCATATTACGGCATTGTGCTGCTGACCACCGAGCTGTTCCAAGCAGGATCTACGTGCAGCGCCAGCGACAACTCAAGTATGGAACCTCGGTGCAGTTTGGAGTGTAATTACCTGACTTTTCATGATTATGTGGACCTTTTGTGGACCACCCTGGCAGAATTTCCAGGTATTCTGGTGACCTTGTGGATGATTGATCGAGTTGGCAGGAGAAAAAGCATggcagtttgttttttattgttctccGTGTCGATTTTGCCTCTGTATTCCTGCACACAAAGgACACTTCTTACggtctttattttcattgctcGAGCCTGCATAACGGGGGGATGGCAGGTTGCATACGTTTATACACCTGAGGTTTTCCCTACAGCAACCAGAGCTATTGCTATCGGTACAGGCAGTGGCATGGCTCGTGTTGGAGCTCTCATCACACCATTTATTGCTCAGGTCCTTCTGAAGTCATCCGTTTACCTGACTCTTTCTGTGTATTTAATATGTTGCTTGCTGGGCATGGTGGCATCCTGGTTTTTGCCCTTGGAAACAACAGGACGGAGCCTTCAGGAATCAACGCAAAGCACAATGgatcaaaaaaacacagaagagtCCTCCAGCAACGCGTGTCCTTAACGGCATATAGAAAACTGAATCTGCGGGATCTCAGGACTAATAGTGGAAGAGGCCATAAAGTATAATTTTAccatatgtatatgcattttaaagtgaagatacatgtatatattatctGTGATTTCCgtcttttttgtctttagaaatgttacattaaacCATTTATGATGTCAAGAA
>XR_006251015.1
GACCAAGCCGTTGAGGTTCCTGCTGAGCCACAGGACCACAGCGTCTGTGAAGACCTCCCAGCCTTGACCCTCATGACTGGTGGGTTGATGAGCCCTCACTGTCAGCACAGAGTTCAGCAGCAGAACGCCTGACGATATTTAGCATTCCAGCATAACCTAGTGAAATGAGTGCACTGAAAAGATCATCCCAAGTGGCTTACCAACGCTGGAAAGACACAAAAATCAGCTTTGTGACATCCCGGGCGGATGATAAAAGCGTCCTCACTGTTCATGAGGAGCAGCCTGGGGAAAACGAGCCTAGCAATGAAGGAGTTTCCACTATTAGGGAGCAAGATTTGGAGGACAGCAAGAAAAGAAGCTGTGGAATCTCAGAAACCTTCACTGTGGAAGAAGCAGTTGAGGCTATTGGTTTTGGAAAGTTTCAGTGGAAGCTGTCTATGATAACAGGAGTTGCGTGGATGGCAGATGCTATGGAAATGATGCTCCTCAGTATTGCAACTCCTCAACTGCGCTGTGAGTGGAGGCTCTCCAGCTGGAAAGTGGCTTTTATAACAGCTATAGTGTTCATTGGAATGATGGTCAGCTCCTCGCTTTGGGGGAACATTTCAGACAAGTATGGCCGAAAAGTGTGTTTAATACTGTGCATGCTGTGGACATTGCACTATGGGCTTCTCAGTGCTTTTGCACCTGTTTACAGCTGGATCTTAGTCTTGCGAGGCCTTGTGGGATTTGGCCTAGGAGGAGCCCCTCAGTCAGTGACATTATATACTGAATTCCTCCCAGTGAAATCCAGAGGGACATCCATAATCCTGTTAGGGGTGTTCTGGGCCTTGGGTGCTGTGTTTGAAGTGTTACTAGCCATGATGGTCATGCCCACATTAGGCTGGAAATGGCTGCTAGGTTTCTCCGCCCTTCCTCTAGTTGTCTTTGCTGCCTCCTGCTGTTGGTTACCAGAGAGTGCTAGATTTGATGTACTGAGAGGCAGAGGAGACAAGGCCCTGGACACTTTGAAATATATAGCAGCAGCTAATGGGAGCTCTGTGCCTACTGGAAGACTTATAGCCAACACGCAGACTGATCGCGGGAGGATTACAGATCTCTTTATACCAGAATACCGAAAAACAACGCTCTTAGTCTGGTTTATCTGGTTTTGCAATGCTTTTTCATATTACGGCATTGTGCTGCTGACCACCGAGCTGTTCCAAGCAGGATCTACGTGCAGCGCCAGCGACAACTCAAGTATGGAACCTCGGTGCAGTTTGGAGTGTAATTACCTGACTTTTCATGATTATGTGGACCTTTTGTGGACCACCCTGGCAGAATTTCCAGAATAGGTATTCTGGTGACCTTGTGGATGATTGATCGAGTTGGCAGGAGAAAAAGCATggcagtttgttttttattgttctccGTGTCGATTTTGCCTCTGTATTCCTGCACACAAAGgACACTTCTTACggtctttat

Function

NR:

description
PREDICTED: synaptic vesicle 2-related protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239863.1 True 1970 mRNA 0.46 17 7558940 7567263
XR_006251015.1 False 1467 transcript 0.48 15 7558940 7566576

Neighbor

gene id symbol gene type direction distance location
arpc5lb arpc5lb,arpc5la,LOC107598357,LOC107681842,LOC107723334,LOC107740947,LOC107587390 coding upstream 47432 7505423 ~ 7511508 (+)
cabp7b cabp7b,cabp7,LOC107587385,LOC107681866,LOC108270594 coding upstream 57371 7494214 ~ 7501569 (+)
m17 LOC107681844,LOC107598316,LOC107723338,LOC107660776,LOC107740965,LOC107587449 coding upstream 85350 7471195 ~ 7473590 (+)
LOC122345181 ns:zf-e68,myhz1.2,myhz1.1,myhz2,myhc4,LOC107598006 coding upstream 188572 7360279 ~ 7370368 (+)
hspb15 hspb15,LOC107587387,LOC107740946,LOC107723340,LOC107691052,LOC107693867 coding upstream 198880 7355694 ~ 7360060 (+)
ssh1b LOC107597252,LOC107681862,LOC107723353,LOC107660766,LOC107740951 coding downstream 510 7567773 ~ 7578212 (+)
coro1cb LOC107723343,LOC107597269,LOC107681860,LOC107587361,LOC107740952 coding downstream 14267 7581530 ~ 7591624 (+)
pkn3 LOC107681845,LOC107737478,LOC107587363,LOC107597294,LOC107712357,LOC107664395 coding downstream 32239 7599502 ~ 7613888 (+)
fam102ab fam102a,fam102ab,LOC107681850,LOC107748511,LOC107664417 coding downstream 75866 7643129 ~ 7672454 (+)
pip5kl1 pip5kl1,LOC107598405,LOC107681849,LOC107712381,LOC107587371,LOC107664401,LOC107748514 coding downstream 108796 7676059 ~ 7683284 (+)
G33899 NA non-coding upstream 69977 7447776 ~ 7488963 (+)
G33903 LOC107723325,LOC107598017,LOC107740964,LOC107587450,LOC107681865,LOC107660777 non-coding upstream 75953 7464371 ~ 7482987 (+)
G33888 NA non-coding upstream 225162 7333469 ~ 7333778 (+)
G33887 NA non-coding upstream 229321 7329347 ~ 7329619 (+)
LOC122344649 NA non-coding upstream 318230 7222397 ~ 7240710 (+)
G34064 NA non-coding downstream 73113 7640376 ~ 7640732 (+)
G34071 NA non-coding downstream 143040 7710303 ~ 7711178 (+)
LOC122345618 NA non-coding downstream 146351 7713614 ~ 7725823 (+)
G34075 LOC107664520,LOC107748505,LOC107597375,LOC107712354,LOC107664410 non-coding downstream 150710 7717973 ~ 7780924 (+)
G34104 NA non-coding downstream 297904 7865167 ~ 7934699 (+)
G33891 myhz1.2,myhz2,myhz1.1,ns:zf-e68,myhc4,mmyhl1,myhb,mmyhl2,LOC107723326,LOC105016875,LOC105016873,LOC106565367,LOC107088603,LOC107384188,LOC107093413,LOC103461378,LOC108241321,LOC107083053,LOC107083052,LOC107378336,LOC106938339,LOC106596646,LOC106596400,LOC106585883,LOC106597527,LOC106594844,LOC108261437,LOC106595486,LOC106598139,LOC108261508,LOC103379498,LOC103379499,LOC108444093,LOC101482140,LOC107660779,LOC108443910,LOC108415768 other upstream 38699 7420140 ~ 7520241 (+)
LOC122345182 ns:zf-e68,myhz1.2,myhz1.1,myhz2,myhc4,LOC107598006,LOC103370545,LOC107723326 other upstream 109443 7373608 ~ 7449497 (+)
G33890 myhc4,myhz2,ns:zf-e68,myhz1.1,myhz1.2,LOC107723326,LOC107660779,LOC108415768 other upstream 112724 7425705 ~ 7446216 (+)
G33878 c9,LOC107691041 other upstream 214862 7338468 ~ 7344078 (+)
gpr107 LOC107723348,LOC107691037,LOC107597176,LOC107693862,LOC107740935 other upstream 258211 7286568 ~ 7300729 (+)
tmem119b LOC107681861,LOC107597286,LOC107587378,LOC107735096 other downstream 25700 7592963 ~ 7597520 (+)
dpm2 dpm2,LOC107664400,LOC107712384,LOC107681851,LOC107598396,LOC107587395 other downstream 105564 7672827 ~ 7674636 (+)
p2rx1 p2rx1,LOC107598068,LOC107712377,LOC107664512,LOC107587372 other downstream 186811 7754074 ~ 7797968 (+)
spns3 spns3,LOC107597443,LOC107712368,LOC107664514,LOC107677447,LOC107722774,LOC107587440 other downstream 434315 8001578 ~ 8010599 (+)
snx19a snx19a,LOC107597619,LOC107681657 other downstream 722457 8289720 ~ 8305446 (+)

Expression


Co-expression Network