arpc5lb (arpc5lb,arpc5la,LOC107598357,LOC107681842,LOC107723334,LOC107740947,LOC107587390)


Basic Information

Item Value
gene id arpc5lb
gene name arpc5lb,arpc5la,LOC107598357,LOC107681842,LOC107723334,LOC107740947,LOC107587390
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 7505423 ~ 7511508 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239908.1
TACCACAGATTTACCAAAGGGAGCTATagcatagttcaattaggacatttaagtcatttttataaacatgtcttagaaaaaagcattactagTGTGCATTTTAAGATAAATCAAAGGCAAAATTAGCCAGGGCAAGTTTCTTCAAGGcattcttctttcagacgaacacaagTCTGAGTTTGATGTTTCCTGGcacttccaagcttggtaatgctcggCAATGCATAAATAACTGACTTTTGACTTGACTAATGAAGTATACGCCGAGTCATCATAGGCCAGCcaagtcagttatttacgttaCAATTGGAAAGCTAGAAATATTTCGTTagaaaaacccatcgatctgcttcagaagacatgtgataacccccgaaggtgtataggttagttttacattgcagtacttgtggatatatATTTTGCAGAGCTTCAATGTAATGGCTGCTATCCACCCGCATTAccaagagccaggataaataaaaaaatttaaaagatggcttcggggtgagtaaaatatggggaattttaatttttaggtgagctattcctttaagcctTTCCTGTGAATCCTTGggtatatgtatttaatactaGGTATTTGAAGAATTTAacgtgaactgtccctttaattgtAAAATCCTTTCATGCACTCCCACCCAGCAGGCGGCGGTAGTGCTCCAGCTTTCGCCATCATACctttcatattaaatatgcgGCTCCGCATCGGTACACCGAAACAGCTCGTGTGCTGGCGTGTGGCGGTATAGCACACTGAACGCAGCCCACTTCGACTAAGCAACTCATCCATCTTTGGATGTGCTTCAATGTGGAGTCCCTGACGCCGACCACAAGCAGAGACCGAAATCTCGCACCGGAGCGCAGGAACTGTTACAGCACACGGGACGCCGGAGAGGGACACTGGCCCCGATGGCCAAGAACACGCTGTCTTCGCGCTTCAGAAAGGTGGACATTGATGAATTCGACGAGAATAAATTCGTGGACGATCACGACGAGCCCGCCGACCAGCAAGGACCCGACGCGGTGGAGGTCGACAACCTCATCAGGCAAGGGGACATGATGGCAGCCCTTCACATTGCTCTTAGGAACCCTCCAATCAACAGCAGGAACCCAGCAATAAAGGAAAGAGCTCAGGTTGTGGTATTGAGGGTCCTAACATCGTTTAAGAGCAGCGATATAGAGCCCGCTGTTAAATCTCTCGACAAGAATGGAGTTGATCTTCTCATGAAGTACATCTACAAAGGCTTTGAGAGGCCCACAGAAAATAGCAGTGCCATATTGCTGCAGTGGCATGAAAAGgcatttGCTGTTGGAGGACTAGGCTCTATTGTTCGAGTTATGACAGCCAGGAAGACTGTATGACTACCCGACTGAACCTGGACACAGTGACGCTGTCACACCGAGGACACGAGGCAGGTTTGCCTGTTGCTTaaaggaaagaagaaaagacCATCATATTGAATGCTTCTGTctcgaagaaaaaaaaaaagtctatgaACTGTAAACTGTAGAGAAACACCGAAGCACTTGTTTCAAACggaaaaaaaattgcttgtGTACAAGTGAAGTAATGTTCATATGCCAATATAGCATAAGTTGTTTTATGATATACTGGCATCAAAAAGATTTCAATCCGACGTGGTTTTGAGTGGGAAGAAACGTactgtggaaaacaaaacaaagccgGTGTTAACATGGTGAATACAGCATATTTAAGATCAGGTGAATTAGAGCAGCTGAAGCGAGCTCAAACATATGAGGTTGTTATTGGATTTGAAGTGTTTTCTGTggttaaaaaagatttaatcaatgttttatttttattttatttcacatcttTGGTCCCATACtctcgttttgtttttgtgcagagATTTAATAATGGAACCAGTGATGTACACCAAAGGGGTAGACTGGGGATCATTGTAAAGTGCCtgctacattaaaataaatggatcTCCTTTATGTCGTCA

Function

symbol description
arpc5la Predicted to enable actin filament binding activity. Predicted to be involved in Arp2/3 complex-mediated actin nucleation and cell migration. Predicted to act upstream of or within regulation of actin filament polymerization. Predicted to be located in actin cytoskeleton. Predicted to be part of Arp2/3 protein complex. Predicted to be active in cytoplasm. Is expressed in notochord. Orthologous to human ARPC5L (actin related protein 2/3 complex subunit 5 like).
arpc5lb Predicted to enable actin filament binding activity. Predicted to be involved in Arp2/3 complex-mediated actin nucleation and cell migration. Predicted to act upstream of or within regulation of actin filament polymerization. Predicted to be located in actin cytoskeleton. Predicted to be part of Arp2/3 protein complex. Predicted to be active in cytoplasm. Orthologous to human ARPC5L (actin related protein 2/3 complex subunit 5 like).

NR:

description
PREDICTED: actin-related protein 2/3 complex subunit 5-like protein

GO:

id name namespace
GO:0030833 regulation of actin filament polymerization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K05754 ARPC5; actin related protein 2/3 complex, subunit 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239908.1 True 1994 mRNA 0.42 4 7505423 7511508

Neighbor

gene id symbol gene type direction distance location
cabp7b cabp7b,cabp7,LOC107587385,LOC107681866,LOC108270594 coding upstream 3854 7494214 ~ 7501569 (+)
m17 LOC107681844,LOC107598316,LOC107723338,LOC107660776,LOC107740965,LOC107587449 coding upstream 31833 7471195 ~ 7473590 (+)
LOC122345181 ns:zf-e68,myhz1.2,myhz1.1,myhz2,myhc4,LOC107598006 coding upstream 135055 7360279 ~ 7370368 (+)
hspb15 hspb15,LOC107587387,LOC107740946,LOC107723340,LOC107691052,LOC107693867 coding upstream 145363 7355694 ~ 7360060 (+)
dab2 LOC107723357,LOC107597220,LOC107691042,LOC107693866,LOC107587364,LOC107740939 coding upstream 150188 7345990 ~ 7355235 (+)
ssh1b LOC107597252,LOC107681862,LOC107723353,LOC107660766,LOC107740951 coding downstream 56265 7567773 ~ 7578212 (+)
coro1cb LOC107723343,LOC107597269,LOC107681860,LOC107587361,LOC107740952 coding downstream 70022 7581530 ~ 7591624 (+)
pkn3 LOC107681845,LOC107737478,LOC107587363,LOC107597294,LOC107712357,LOC107664395 coding downstream 87994 7599502 ~ 7613888 (+)
fam102ab fam102a,fam102ab,LOC107681850,LOC107748511,LOC107664417 coding downstream 131621 7643129 ~ 7672454 (+)
pip5kl1 pip5kl1,LOC107598405,LOC107681849,LOC107712381,LOC107587371,LOC107664401,LOC107748514 coding downstream 164551 7676059 ~ 7683284 (+)
G33899 NA non-coding upstream 16460 7447776 ~ 7488963 (+)
G33903 LOC107723325,LOC107598017,LOC107740964,LOC107587450,LOC107681865,LOC107660777 non-coding upstream 22436 7464371 ~ 7482987 (+)
G33888 NA non-coding upstream 171645 7333469 ~ 7333778 (+)
G33887 NA non-coding upstream 175804 7329347 ~ 7329619 (+)
LOC122344649 NA non-coding upstream 264713 7222397 ~ 7240710 (+)
G34064 NA non-coding downstream 128868 7640376 ~ 7640732 (+)
G34071 NA non-coding downstream 198795 7710303 ~ 7711178 (+)
LOC122345618 NA non-coding downstream 202106 7713614 ~ 7725823 (+)
G34075 LOC107664520,LOC107748505,LOC107597375,LOC107712354,LOC107664410 non-coding downstream 206465 7717973 ~ 7780924 (+)
G34104 NA non-coding downstream 353659 7865167 ~ 7934699 (+)
LOC122345182 ns:zf-e68,myhz1.2,myhz1.1,myhz2,myhc4,LOC107598006,LOC103370545,LOC107723326 other upstream 55926 7373608 ~ 7449497 (+)
G33890 myhc4,myhz2,ns:zf-e68,myhz1.1,myhz1.2,LOC107723326,LOC107660779,LOC108415768 other upstream 59207 7425705 ~ 7446216 (+)
G33878 c9,LOC107691041 other upstream 161345 7338468 ~ 7344078 (+)
gpr107 LOC107723348,LOC107691037,LOC107597176,LOC107693862,LOC107740935 other upstream 204694 7286568 ~ 7300729 (+)
kank1b kank1b,LOC107730999,LOC107691025,LOC107597012,LOC107587402 other upstream 516651 6978548 ~ 6988772 (+)
svopb LOC107723362,LOC107681854,LOC107598053 other downstream 47432 7558940 ~ 7567263 (+)
tmem119b LOC107681861,LOC107597286,LOC107587378,LOC107735096 other downstream 81455 7592963 ~ 7597520 (+)
dpm2 dpm2,LOC107664400,LOC107712384,LOC107681851,LOC107598396,LOC107587395 other downstream 161319 7672827 ~ 7674636 (+)
p2rx1 p2rx1,LOC107598068,LOC107712377,LOC107664512,LOC107587372 other downstream 242566 7754074 ~ 7797968 (+)
spns3 spns3,LOC107597443,LOC107712368,LOC107664514,LOC107677447,LOC107722774,LOC107587440 other downstream 490070 8001578 ~ 8010599 (+)

Expression


Co-expression Network