thbs4a (thbs4,thbs4a,LOC107703260,LOC107555496,LOC107756306,LOC107720209)


Basic Information

Item Value
gene id thbs4a
gene name thbs4,thbs4a,LOC107703260,LOC107555496,LOC107756306,LOC107720209
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 19184008 ~ 19197620 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240051.1
aattaataataaaaaaaatacatcagtcAAATAATTGcgtcaaataaatgaacaaacagtgTTGGGGAGTAACTATAGTTACAAGTAACATGTGACTGTAAATAGTTACAGAGAAAAAGTGTAgtcatattacatattttaatcaaaatgttaaCGATAACAAAGGGGATTAGTCGGAATGTTTTCTCACACATGCTGATTTCATTTATCCCCCTCCCCAGCATGTGCATAAACCCAAATTTATTTCTACGGTATTtgggtttcttttattttttagatttttagattttagatatTCTTTCGCAGATTAGCTGCTTTGTTAGGTGTCAGTGTTTCctgacatatttgtttttcaaaaaacttttatagCTATATCTTGTTATGactttaaatctgtatttaacctcGAAAGGAACGCTGAGGTTAAATGTAGGTGCTAaagtctgattttgtggtgtttgtaccttaaaaataaataaaaggattttaagattttatagaAGGATTTTAAACAGTCTGACAGTAATCAGTGTGGAGCACTGGTGTAggattaattcattaattagtTACATTAGCCTACTTTGCTACTTATTACATAGGGTACTTTAATCTGTAACTTATGACATTTCTAAAGTAACATGtaacactgtaaataaataatagaaataaaataaaaatacattatatagatGTGTATTTAGGATAATCTACAattgtgttgttattattattgttttatatgagAATCTGCAAGATACAATACACAGGCAGTTGTAGAGTTAATGTGGTAAACTCATTCATATGAAGCTGAAAGTTTAATTGATTTTCCATAACTCATCTGTTGTAACACTCAAACTGGCAAGGCTCAGCATGGACATGTCACGCCAGATCATTCCTGTAAAtgtgttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttcttacttactttctctctttctttcatatTTAGCAAATTGTTTGGTTAAGTACAGTCAAATTGTTAagccattattataaaatgattcaaaaaaaaaattattaattgcaacCTTTAACTAGCTGGAACAGGTTCTGACCGAAACCCAAAGCATATACTTCCATCATTTACCATCATTAACAAAGAGCCCTTTAGAAGGTTTTGATCTGACCTGCTCAAAGCAATATGTGACTGGTAAAAAGCACAGAAGCGTTCTGGAGGAGGTGCTTGGTCACACCTTATATATAGAGACATCTGAAAAGCGTAAATCACTTGAGCACCAGTCTGGTTCTCGTTGATCTGCAGGACTACAGGGAACAGGCAGTTCTGTTTTGACGGCTACTGATCTAGACTGAATCAGGGCTCAGAACAGAAACTATTTTTCCAGGAATAAGGGTGGAACACTTCAGCTGGATTTTGTgacatacaattttttaaaatgggtACTTGGATAAGAACCATATTCAGTTTACAGTTAATGTTGCAACTATTTGATACAGTGATAACACAAGGAATTGTCTATGATCTTCTGGTGTCACCGGATTGCTTACCTGACCTTTTGCAAGGAGGAATACAGGCGAAGAACATGGACAATGCTTTTATCCTTGCAAGCCTTCAGCTGCAAAACAAAACTTCATCTCGGGTCTTCCGGATCTTCAATGCCCTGGACAACAcagattattttgatttcaCCGTTCAAGGGAAAACCAACAGAGTCGTTTTGAAATTTCTGAAAAGCAATGGAAAGATTGGAACAATCAGTTTCAGTAAAGTGCAGCTGACAGATGGTCAGCAACACCATATACTGCTCCACTTCAGCGGGCTGCAGCAGGGCACCCCCGCCATGGCCCTCTATGTGGACTGCAGGCTGGTAGAGAGAGTGCAGGACGTCCCGCTAGCCTTCAAATCACTGCCGCAGGGCCGGAAACGAGTCACACTCAAGACACTGCCAACATCATCCCAGGACAAGTTGACAGACCTCAAACTCGTGCTTGATGAGTCTATTGATAATGTGGTGGAGCTTCAGGACTGCAGTGATACAGAGCAGGGGGAACAGACGGAAACACTGCAACTCCTGGGAACAACTTCAAAAATGAATGCTGGTCCAATGTTTGAGCTCATGCGAATGATCCAAGAGTTGAAACAGAAGGTTGATCAGCAGACCAAAGAAACCGCTGACTTGAGAAAGACTATCATGGAGTGTGTTCAATGCAATGATGCGGTTGGATGGGACAAAGCAGGACTACAGAATAAAAAGCAGTCCAAGTGCAGGCCAGGGGTCTGTTTTAAGCCGGATATGTGTATTGAAACAGCTGAAGGTGTGGAATGTACACCCTGTCCTCAGGGCTACACTGGAGATGGGGTTCGATGTGACGATATAGATGAGTGCCAGTTCGACCCATGCTTCTCTGGTGTTCGGTGTATTAACACTGTACCAGGGTTCAGATGTGAGAAGTGTCCACAAGGCTTCACTGGTCCAGATATTCAGGGTGTGGGCGTTCACTATGCccagacaaacaaacaaATATGTAATGATATTGATGAGTGCCAGGTTGATAATGGTGGCTGCACACCCAATTCATTCTGCCATAACACAGTGGGTGCATTTCACTGTGGGATGTGCAGGACTGGATTTACAGGTGACCAGAATAGCGGCTGCGTAAGTACTGGCCTGGACCCTGCTCCTCTAGTTGACAGGCTGTGTGGGAACGGCCAGCCAAACCCATGTGACATCAATGCAGAGTGTGTTGTGGAAAGAGATGGGAGCGTCAGCTGTGCGTGCAAAATTGGCTGGGCAGGAAATGGCTACGTGTGTGGAAAAGACACAGACATCGACGCTTATCCAGATAGTAAACTTCAGTGCAGAGATGGAACCTGCAAGAAGgaTAACTGCATGTTTGTTCCAAACTCCGGCCAAGAAGACGCAGACAGAGATGGAAAGGGAGATGCGTGTGATGAGGATGCAGACAGTGATGGCATCTTTAATGATCAGGACAACTGCTGGTTGGTTCCTAACATAGACCAGAAGAACAGTGATAAAGATCTCCATGGTGATGCTTGTGATAATTGCGTCAACGTGGAGAACGCGGACCAGCGGGACACAGATAAAGATGGACTGGGAGATGCCTGCGATGATGACATAGACGGAGATGGTTTGAAGAACTTCCTGGATAACTGCCAGAGGGTTCCCAACCCTGATCAGAAGGACAAAGATAATGATGGTGTTGGTGATGCATGTGACAGCTGCCCTGATGTGCCAAACCCCAATCAGTCTGATGTTGACGATGATCTTGTTGGAGACACTTGTGACACAAACATTGACAGCGATGGAGATGGTCATCAGAACACCAAAGACAACTGCCCCAACATCATTAACAGCGCACAGCTGGACACTGATAAAGATGGGCTCGGAGACaagtgtgatgatgatgatgataatgatggcATTTTGGATGATGAAGATAATTGTAGACTGGTACCAAACCCAGACCAAAAGGACGAAAACAatgaTGGGGTGGGTGATGCCTGCACTGGAGACTTTGACAAAGATCATGTGATAGACCGAATCGACACCTGCCCTGAGAATGCAGAGATCACTTTGACTGACTTCAGAGCCTATCAGACCGTGGTTCTGGATCCAGAGGGAGAGGCTCAGATCGACCCCAATTGGGTTGTTCTTAATCAGGGGATGGAGATTGTCCAAACCATGAACAGCGACCCGGGACTAGCTGTTGGATACACAGCATTCAGTGGCGTAGACTTTGAGGGCACCTTCCACGTGAATACAGTGACCGACGACGACTACGCAGGCTTCATCTTCGGCTACCAGGATTCCTCCAGCTTCTATGTGGTGATGTGGAAGCAGACGGAGCAGACGTACTGGCAGGCAGTGCCCTTCCGAGCCGTGGCTGAGCCTGGCATTCAGCTTAAGGCTGTGAAGTCTAAAACCGGGCCTGGGGAGTTCCTGAGGAATTCTCTGTGGCACACAGGAGACACAAACAATCAAGTGCGCTTGCTGTGGAAAGACCCTCGTAACGTCGGCTGGAAAGACAAGGTGTCCTACCGCTGGAATCTGAAGCACAGACCCCAAGTGGGATACATCAGTGTGAAGTTTTATGAAGGTACCGACTTGGTTGCAGACTCTGGAGTTGTTATTGACACCAGTATGAGAGGAGGCCGTCTCGGAGTGTTCTGCTTTTCACAGGAAAACATCATCTGGTCCAATCTGAGGTACCGCTGTAATGACACAATTCCGGAAGACTATACAGAACAAGCCAAGGAGTAATGAAACCGGAGAGCACTACTAGTGACGTGACTGATGTTTGGGGTACTTTTATTTCTAGTACAACATGGGCCTTTTACCGACTTTTGCATTCAAGACAAATCCAGTTTTATAGTTATGCTGAATTTACACTTCTGAAATGTTTActgcacaaaaatacagttcAGCAGGAAAGAACGAAGCTTGTGTGTTACGAAACgctcaataaatgttttaatatgaataaatacattgaaatgGTCAGGTTTTGTGCTTGGAGAATATTGTAGACATGTaatcttaaagtgacagtttaaacaaatgtaaaaataaaatgactataaaaatataaaaaaaatacgataatataaaataaaaaagttttgggGTCAGTATAAAGGTTTTCaacattcataaatgttttcttaGGCAGTAAATCAGCTATAGtagctgcaaaaaaaatcagcattcccttcaaaaggaataaattacattttttaaatatatcgaaaaatttaaaaatatattttattaaatatattccttggtgagcataagagacttctttcaaaaactttaatccacagagaaaaaaataaaaaggttgttTCACCATAAATTGCACTTAAAATTTCATATAGTATACGTGTTAGCCATTTCCTTTCTGTGCACaactacaaattaaaaaaacccatgtattaaaacattaaataaagtaaCAGACTTAcaccattttattcatttgctttttttattgaaagaactggaaatatcaataaaaacactaaaaagaaTGTTGATCCTGCAGCAGTTAAACACGTATGACTTCCTTTCATGGAACGTACTGAAATGATaggaaaaagtaaataacaataaagaaagaaaaaacaaatctatgCATATAAATGAGGACAAGAGTTGTTTGTAAACTTGCTGTACATATTTTTGGATTATAATGTCTTCATGCAAAATTAGTGAAAACAGCACAAAGCGCgagattacattttttgcaatattatgaGTACATCTAGTGGTCATCTTTACAATGGGCTATTTACATAAAGCACATATTGCAATCAAATGTCACTTATGTTTagcatatttgtaaataaagaaaaacaatgtttaatccagacaaacattttaaaccaaatacTAAGCATTCGATTTTTCATGAACAGTATGCTTACAGCTTAATGCAGTTGTAGCAGGTAGAGTTTAAGGCAATCGTTACCTATTTGCTAATTCTGATTTATATAAAGGCCAAAAAcatcatcacaggaatataaaCACATGCCGGCTCTAATCTAGAGATTTTGGTTTGTCAAAGCAAGTGGGACAGCTACAACTGCTACACAGGAATAaccataaaatgtcaaataattcCAGTTCTAGATATTTCCTTCATCGAcaacactttattattattattttttttttttaccagggAGCATCAGAAGCGCTGCATTAAGTCTAATACGTGCATCTCCTGTAAACTTAAACTGAATACCACAAACaagaaacacaaacatgcacttATAGCAACAAAAACCTCTTCAAGATTAAATAGAATAGCTGTAACAATGCGTTTTAAGTATAAAAGATCGTACAAACTCATTTTTTGACAAATGACATGCTTGCAAGTCTAGTGCATGAGCtggaataaaatattatagGACATCCATGTTCTAAAGCACCATTTAAATTGTAACGAAAAtcgaaaaaaataagaaaaatctaTAGCTTCAGTGTTGCTGTTGGCCATGTAACAATTTGTGTGGCAGTTTGGGGTTTTGGGGCATAACGGTGTGGCCTTGGCTTTGCCCGTCCGGTCCAAatcatcataaaaacatttactgggAATGGCAGTCGCATGCTTTCCTTAAAACGGTGATTCACAGGAAACAGCACGTGGAATTAATCACTACCTGAGATTTTTTGATGGAGCCGAAAGACAGGAAACTCGCGAAGGAATGTTGCGGACATATTTGGAAATATTGTTTTGGTGTTGTTTCATAAGGAATTATTAGGGTGCTTCAATAAATGCAGTAACGTGACATCTCATGTGAGTACATTTATTCACATATATGTACAAGGGATAATTTTGCACAGTCGTTTCTTAGCTGGTTTTGATCATGTTTCCATGAGTGCAACTGGTGGTGTAGTGTTGTGGTTTTGCAAGGCAGCGCTCTCCtaactaaagaaaaaagagatcaattaaataaatatgtacatttactCAAATAGGAAGTCTTGTTGCCTTAGTGAAACACCCTTAAAGTGAAATACTACTACAAAACACGCTTGAAGACCTTTCGAGAAGAAACGaacgaat

Function

symbol description
thbs4a Predicted to enable calcium ion binding activity and heparin binding activity. Predicted to act upstream of or within cell adhesion. Predicted to be located in extracellular region. Predicted to be active in collagen-containing extracellular matrix. Orthologous to human THBS4 (thrombospondin 4).
thbs4 Enables calcium ion binding activity; heparin binding activity; and integrin binding activity. Involved in several processes, including endothelial cell-cell adhesion; myoblast migration; and positive regulation of neutrophil chemotaxis. Located in basement membrane and extracellular space.

NR:

description
thrombospondin-4-B-like

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K04659 THBS2S; thrombospondin 2/3/4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240051.1 True 6608 mRNA 0.39 21 19184008 19197620

Neighbor

gene id symbol gene type direction distance location
cmya5 cmya5,LOC107699728,LOC107720274,LOC107703257,LOC107555495,LOC107756304 coding upstream 6122 19164517 ~ 19177886 (+)
tent2 LOC107720275,LOC107699727,LOC107587508,LOC107756276,LOC107703258 coding upstream 19853 19157859 ~ 19164155 (+)
ckmt2b ckmt2,ckmt2b,LOC107720280 coding upstream 109378 19068905 ~ 19074630 (+)
rasgrf2b rasgrf2b,rasgrf2,LOC107720279,LOC107756301,LOC107703251,LOC108423655 coding upstream 115739 19015311 ~ 19068269 (+)
ubac1 ubac1,LOC107699722,LOC107587514,LOC107555477,LOC106579794 coding upstream 222287 18953377 ~ 18961721 (+)
setbp1 setbp1,LOC107720273,LOC107587504,LOC107756308,LOC107555500 coding downstream 27305 19224925 ~ 19276149 (+)
slc14a2 slc14a2,LOC107555481,LOC107703230,LOC107756279,LOC108423644,LOC108255524 coding downstream 91931 19289551 ~ 19294961 (+)
trnap-ugg_3 NA coding downstream 220478 19418098 ~ 19418169 (+)
ptar1 LOC107699739,LOC107587501,LOC107567149,LOC107703268,LOC107756313 coding downstream 250638 19448258 ~ 19457740 (+)
apba1a apba1,apba1a,LOC107587500,LOC107720269,LOC107756314,LOC107567151 coding downstream 260738 19458358 ~ 19506727 (+)
G37620 NA non-coding upstream 257006 18925437 ~ 18927002 (+)
G37619 NA non-coding upstream 258575 18925210 ~ 18925433 (+)
G37618 NA non-coding upstream 259332 18923302 ~ 18924676 (+)
G37540 NA non-coding upstream 433953 18678596 ~ 18750055 (+)
G37501 NA non-coding upstream 796006 18386010 ~ 18388002 (+)
G37734 NA non-coding downstream 90396 19288016 ~ 19288328 (+)
G37843 NA non-coding downstream 396450 19594070 ~ 19647075 (+)
G37951 NA non-coding downstream 562091 19759711 ~ 19760204 (+)
G37956 NA non-coding downstream 596823 19794443 ~ 19867398 (+)
G37958 LOC107745529,LOC107672542,LOC107720246,LOC107552607 non-coding downstream 675622 19873242 ~ 19874144 (+)
msh3 msh3,LOC107720281 other upstream 169908 18962322 ~ 19014100 (+)
G37626 LOC107720210 other upstream 243113 18938813 ~ 18940895 (+)
arsk arsk,LOC107703223,LOC107720292,LOC107756297 other upstream 336334 18842819 ~ 18847674 (+)
LOC122345691 NA other upstream 1656564 17526024 ~ 17527444 (+)
LOC122344991 camsap1b,LOC107587696,LOC107672541,LOC107552625,LOC107720249,LOC107745551 other upstream 1811149 17364849 ~ 17372859 (+)
nrarpb nrarpb,nrarpa,nrarp,LOC108255347,LOC107595556 other downstream 509668 19707288 ~ 19710070 (+)
col27a1b col27a1b,col27a1,LOC107699687,LOC107720196,LOC107552608,LOC107731038,LOC107720245,LOC107672548,LOC107587699 other downstream 769957 19967577 ~ 20035380 (+)
lix1 lix1,LOC107552634,LOC107699708,LOC107587723,LOC107672536 other downstream 945663 20143283 ~ 20151686 (+)
G38092 LOC107699781,LOC107552636,LOC107587661,LOC107672574 other downstream 987415 20185035 ~ 20513916 (+)
LOC122345823 LOC107740804,LOC107665032,LOC108255802,LOC107672563,LOC107731037 other downstream 1086997 20284617 ~ 20297222 (+)

Expression


Co-expression Network