tent2 (LOC107720275,LOC107699727,LOC107587508,LOC107756276,LOC107703258)


Basic Information

Item Value
gene id tent2
gene name LOC107720275,LOC107699727,LOC107587508,LOC107756276,LOC107703258
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 19157859 ~ 19164155 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240052.1
gggacttttattttaaaatcgcAGGCAAAAACCCGGAAGCAATggtgttttgatatttttcacaCGCTTGTGCTCTCTTCCTTAGTAAACGTGCCAGCGTTATCGCCGAAGGCAGCAGATGTTTGCTCTGGCTGAGCAGGAGGATGTTCCCTAAAGGTTACGTCTTTTCCCATAAAGATGGGCAATCTGGATATTTACCACACACGCTGTCCCAGCAACGGAGGACTGAAGCCCATCTGAACGTTACAAACTTCATTGGTCCGCCGATGAATATTCCTTTTTTGATTCCAACATGTCAGTGGACGCAAGTAGAGCAGCCTGATGGAAGGAACAGAAAGAGAAGGAGAGATAAACAGACTGAGAGTGACCTGAAGAGACAGCGTTTCGGTTCCCCAGCTCCTCTCAGCCGGCCTTCGAAAAATGCCAACTTTACCCCCCAACCTGCGACTGGACCAGTGTCAAGCAGAGAAATGGGTAATTCCTATTCCTGCGTCCCCACGTGCTCATCTGCCGCCTCCAAGACCGGAGGCTGTGTGCCACCTTTAAGAGAGGGATCCCAGCAGAGCACCTTTCAGCCATCATCAGTCAATGACAAGCTAAGTCAGCAGATTCTCGAGCTGTTTCAGGCTTACGAGCAACAGAATGAAGATCTGGAGAAGAAGGAACGCTGCCGAGCAGCACTGCAGAGGGACATCCAGACAATCTTTCCATgCGCTCAAGTCTTCTTGACCGGCTCATCTTTAAATGGCTTTGGTAGTCGCAGCAGTGATGCAGATCTTTGTCTTGTCACCGAAGAAGGGACgGTAAACAGAAAAGATGCCGTATATGTTCTTAATCTTGTGCGGAAATTGCTTTACAAATTGTCTTACATTGAGAGTCCTAAGCTCATCAGAGCTAAAGTGCCCATTCTGAAATTCAGGGACCGAGTCAGTGGTGTGGAGTTTGACTTGAACTTTAACAACACCGTTGGTATCAGAAACACCTTCTTGCTGCGGACGTACGCCTATGttgaaaaaCGTGTTCGCCCTATCATCCTTGTAATAAAGAAATGGGCAAGTCACCACCGCATCAATGATGCCAGCCGGGGAACACTGAGCAGCTACACGCTGGTTCTTATGGTCCTGCATTACCTTCAGaCTCTTCCTGAACCTGTCATACCATGCCTTCAGATGGATTATCCAGAGTGCTTCAACTGTAAGATGGACATTCATCTTGTGCCCAGTGGACCAAGCAATATTCCAGCTTTTGTGTCTAAAAACCAGTCCTCCCTGGGAGACTTGCTCTTGGATTTCCTCAAGTACTATGCCACTGTTTTCAAATGGGATGAACATGTGATCTCTGTGCGTCAGGCAAGAACTCTCCCCAAGACCAGTTGGAGAGAATGGAGAGATAAGTTCATTTGTGTAGAAGaaccATTTGATCGCACAAACACAGCCAGAGCTGTTCACAACAAGATTAAGTTTGAAGCCATTAAAGCAGAATTTATGAAGTCCTACCAGGTTCTTCAGCTGAGAAAAGATCTCAACTTCATCCTGCCTCTCAAAAATGCAAAACCAAAAAGATAACGTGACCCCCAGATAGTAATAAACATACCGATTGGATTAAACCTGGAGTCTTCAGTCATACATTGTCAGAAGAAATGCTTTACTTCTTTGCAGAGGGCTTTTGGGTGCGCTGGACCTTTTGCAATGTGTTGATATATTATCTAGTCCCTAGTCAGGAACATCAGTGTCTATGTTTGAGTTGTACATGAAACATCAGACAGCGAGCAATATCTTTTGCCCATATGGTACACAGTCTGCATTCAGATAATGAATTAGCTgttgcaaaaactttttttttttctctgagcaTTTTTTGGGTGTATTGGCCAATGTAATCCTTTTCTAGCTCACTGAAATCAGAACAAAACACTATACATGATATCCCGACAGCTTTTATGTGATCTTTGATTTCCTTAAAACCCccaaatagtaaaaaaaaaacacctttttcttGCAACTGACTACTTTTACCTGAAAATTCTGTGAATACACTTCTTTGTTTCTTATATTCTGTCATGTTTTGTATAGTTTGTAcagtcttttaaatgtttatttatctgATTAAAATGTCACTGTGAAATTGTAA

Function

NR:

description
poly(A) RNA polymerase GLD2

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0043631 RNA polyadenylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004652 polynucleotide adenylyltransferase activity molecular_function

KEGG:

id description
K14079 PAPD4, GLD2; poly(A) RNA polymerase GLD2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240052.1 True 2130 mRNA 0.43 15 19157859 19164155

Neighbor

gene id symbol gene type direction distance location
ckmt2b ckmt2,ckmt2b,LOC107720280 coding upstream 83229 19068905 ~ 19074630 (+)
rasgrf2b rasgrf2b,rasgrf2,LOC107720279,LOC107756301,LOC107703251,LOC108423655 coding upstream 89590 19015311 ~ 19068269 (+)
ubac1 ubac1,LOC107699722,LOC107587514,LOC107555477,LOC106579794 coding upstream 196138 18953377 ~ 18961721 (+)
pomt1 LOC107720285,LOC107699719,LOC107587516,LOC107756274,LOC107555474,LOC107703250 coding upstream 236344 18914683 ~ 18921515 (+)
LOC122345689 NA coding upstream 243779 18900511 ~ 18914080 (+)
cmya5 cmya5,LOC107699728,LOC107720274,LOC107703257,LOC107555495,LOC107756304 coding downstream 362 19164517 ~ 19177886 (+)
thbs4a thbs4,thbs4a,LOC107703260,LOC107555496,LOC107756306,LOC107720209 coding downstream 19853 19184008 ~ 19197620 (+)
setbp1 setbp1,LOC107720273,LOC107587504,LOC107756308,LOC107555500 coding downstream 60770 19224925 ~ 19276149 (+)
slc14a2 slc14a2,LOC107555481,LOC107703230,LOC107756279,LOC108423644,LOC108255524 coding downstream 125396 19289551 ~ 19294961 (+)
trnap-ugg_3 NA coding downstream 253943 19418098 ~ 19418169 (+)
G37620 NA non-coding upstream 230857 18925437 ~ 18927002 (+)
G37619 NA non-coding upstream 232426 18925210 ~ 18925433 (+)
G37618 NA non-coding upstream 233183 18923302 ~ 18924676 (+)
G37540 NA non-coding upstream 407804 18678596 ~ 18750055 (+)
G37501 NA non-coding upstream 769857 18386010 ~ 18388002 (+)
G37734 NA non-coding downstream 123861 19288016 ~ 19288328 (+)
G37843 NA non-coding downstream 429915 19594070 ~ 19647075 (+)
G37951 NA non-coding downstream 595556 19759711 ~ 19760204 (+)
G37956 NA non-coding downstream 630288 19794443 ~ 19867398 (+)
G37958 LOC107745529,LOC107672542,LOC107720246,LOC107552607 non-coding downstream 709087 19873242 ~ 19874144 (+)
msh3 msh3,LOC107720281 other upstream 143759 18962322 ~ 19014100 (+)
G37626 LOC107720210 other upstream 216964 18938813 ~ 18940895 (+)
arsk arsk,LOC107703223,LOC107720292,LOC107756297 other upstream 310185 18842819 ~ 18847674 (+)
LOC122345691 NA other upstream 1630415 17526024 ~ 17527444 (+)
LOC122344991 camsap1b,LOC107587696,LOC107672541,LOC107552625,LOC107720249,LOC107745551 other upstream 1785000 17364849 ~ 17372859 (+)
nrarpb nrarpb,nrarpa,nrarp,LOC108255347,LOC107595556 other downstream 543133 19707288 ~ 19710070 (+)
col27a1b col27a1b,col27a1,LOC107699687,LOC107720196,LOC107552608,LOC107731038,LOC107720245,LOC107672548,LOC107587699 other downstream 803422 19967577 ~ 20035380 (+)
lix1 lix1,LOC107552634,LOC107699708,LOC107587723,LOC107672536 other downstream 979128 20143283 ~ 20151686 (+)
G38092 LOC107699781,LOC107552636,LOC107587661,LOC107672574 other downstream 1020880 20185035 ~ 20513916 (+)
LOC122345823 LOC107740804,LOC107665032,LOC108255802,LOC107672563,LOC107731037 other downstream 1120462 20284617 ~ 20297222 (+)

Expression


Co-expression Network