whrnb (dfnb31b,LOC107681240,LOC107560234,LOC107690673,LOC107715750,LOC107709820)


Basic Information

Item Value
gene id whrnb
gene name dfnb31b,LOC107681240,LOC107560234,LOC107690673,LOC107715750,LOC107709820
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 8886982 ~ 8938072 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240078.1
AACACGCGGCTTCATTAAAtcactctcacaaacacacataggGAGATAGAAAGGACAAGGGAAGATATTAGGTATTTTAGCACTTAATTGAATTTCTGTCGTACATTTTGGAGCAGTtttgagtgtgtgcgtgtgtgtgcctTTGGTGAGTGAGTCATAGTGATACGTGACTTACAGCTGAAGTGTATTCACTTCTACAGTGCATAAAGATCAATGGGCATCTCTATTGTCTCATTTAGGCCCATTAATTGTTCATTAATTTATGCCACCGTGCGCCTATGCCAAGAGCGGTAATTGCAAATTAGCAATGAATTTGACTCTTTTGCTGCAATGTCACCATCTTAAAGGTATGTGACACCCGAAAGAATGAAGAAAGTTCGGTTGAGAGGttctgttatcattttaaatcaagcatTTAACAACTGAGGCTGTTGTTGCTTACTTTAATGTTAATTACGTGCTCACGTTTATTGTATTATACTGCACTCTGGTTTATTTCATtcgtattttatcattttatttagcaccGATGCACTCTCCCTGGCAAAACAAATGCAGGTTAAATACAGCCTTTAAGAAAGCAACAGTCTGTCTATGTGAGTTTACTATTAACCCTCAGGGAGACTATTGATGTGCCGTAGGTTGTGGATGTCTGCTGACAGGCCTTTCTAATTCCTCTTTATGAGCTTAGAGGATGACACGTGCGTTTCAACTGAGCTTCCCCAGCAGCTGAAATGCACAGACTGGACTAAAACCTTGCGGCTTGTCTTTTAAGCACATCAGACAGCCTACATAATAAggataattattattgtttaaaacaattcaCGGGCTGCCATGAATGTGCACGAATGGATTATGCAGCTCTTCTCAGCAGATGCAGCATTATACACAGCCTCTGTGAGAGTTGGGTTCTCACAACACCAGCCTGATTTGAGCAGAGCTGCGTTTTAGATGTAATATTACTGTCTTTGCCCAGGCAGACACAAGGGATTAGAGAGCTTCAGGTATAAATGGAGCACTCTcaaataaagcacacacacataaatgcgTCCAAACACTGCCCTCGTTTTGTAAATCTGATCAAAACAGCTTTCACTGACCCGTCTTAACTTAAAAAGAGAAATCAGCTGTAAGATTGAAATGTAAGGGCCTTTTTCATCTGCACCgagacatttctttttaaaatgttccaaaGGGAGATGTCAATCATAATCGGATTTGGTTTTCATTGGTcattactgaaaaatgtatttaggtcaCTACTATTCTGaaagtttttctgtatttgatgGCTCCCTGGaacacttcattttgattggtcagcTGTGGCTTTGTTAGGTCAAATATTTTTGATCTTTAAATTGGATGTTCCAACATTGCCATACTGGAGATTTGATAATTTAAGATCTCAATATTAAATCATAAGTATGTACCAGCATTTGTCTTCCCAGCTAAAACAAATTTTGTTCTAAAATGTCTTGCTAACATACccaaaaaattatgaaatgttctctgaattttcaaaacattttcagtttatctTGGTTATGGGAGCGTTATGGGACTTTTACAGAAATTATTGAAATGCTTATGTTGAATGTTCTCTTAATCATCCAAATCATGAACgtccaaataaaatgtttcagagaAACGTTGAGTCAACAATgcaaataatagaaatataaattttgGGCTAAAGCAAGAACTTTATTAAAGACCAGTTAACTCtgaattaacattatattaacagCACAACAAGAATGATCACATTAGAGAACCTTGACAAAATGTTAGCCGACATTCTGAACAACGAGTTGTTGCttcaaagataaataaataacatttagagGATCTGTCAGTGGCACATACGTGTTAAGTTAAAATCAGGTGACTGTGGTTTCTCCAGTGTTTCCCTTTGAGAACTTTTACGTTAAGTGCGCAATGCTCTTTGGAAACGACTTATTTTTCAATTGATCAACGTCAATAGCCCGGTGgccttgaaaattaaaaatagctcacgcacagaaaaaaaaatgtagtttagtTTGTCCAAATGCGTTCCTCACAGTTGTTTGTTCCTAAGCAACAGAGGCGCCTCGCGCGTGCGTCATTTCCTCCAGAGCGCAGTGTCGGTATCTCACTACGGACTCGGTAGTAGCGACAAGAAATCCGAGCGAGCCGCACTGACCAGACGCGCTGCTCTTCAGAGCTCAGCAGCCAAACTTCAAACCTTCgtgctgtgtttctgtttctttttcggAGTGGGACGCGTCTCGCCACCGGTTCCTCAACGCGCAGTGTCTTACCAAAAGGATTAAAGTCACTATAACGGACGTCAAATCCTCGCGGGACTTAATTCGGGTTTGTTGTTTGCCTTTGAAAGAAGACTGTAGTTTTTCCACTCTtcaaagtgatttatttaaCCGATTTCAGCATTAATCAAAAGTTTCCAAACTGCACCGCGCTAGTTATTCCGCGTTGTTATTTTGAAGACTTAACTCGGCATGGCTGGTCTCACTACAGGTTAACGCACGAATCGCGCCGCGCTTCTGTTTTTAGCGAGAGGCAGCGATCGCGCTCTGTTCCTGATGCCTGATGTGAAACCCCCCTGTGGTTTTGAGGTGTCCGAGAATGAGCACGGAATTGGAGCGCGCTTCTCTCAAGTCGGGCGCGAACTCCCTGGGCTCCGGTGGCCGCGCGCTTTCCGTTAACGTCAAGAAGTTGCACAACGCGCTCAACGTGCTGCTCAACGACTTCGAAAGGGAGCAGTTCATCCACTGTCTCAACGTATACCACGCCAAACGCAATGTCTTTGATCTCGTGCAGACTCTCAAAGTCATTCTCAACACACCCAACAAGCGCCAACTCTTACCCATGCTTCGCCTGGTCATACCCCGCTCGGACCAGCTGCTGTTCGACCAGTACACATCGGAAGGGCTTTATCTGAAGACGGATCTGCTGGCGGCCGGTGTCAAGCACGAGTGCTCGGATGACCACGGAAGCACGAACGCTCACGCCGGAGCATCCTCCGTGCACTTTCTGCACGAGTCCGAGCAGGCCGGTCCCAGTCACGGACCCGTGCGGCAGGCTCCGGTTTTCAGCACCGCGGCTGAGGGGACAGCGCCAGCGCTGATGCAGGAAGCGCCCGATGAAATTCGCCAAGTTACGCTGAAAAGGAGCAAGAGCCATGAAGGCCTGGGATTCAGCATACGGGGTGGGTCAGAGCATGGAGTTGGCATCTATGTGTCTTTGGTGGAGCCGGGATCATCCGCTGAGAGAGAGGGGCTCAGAGTTGGAGACCAGATCATGCAAGTCAATAGCATGGTGTTTGACCGAGTCACTCATGGAGAGGCAGTCAAGGTATTAAAAGGCTCTAAGAAGCTCTCGATGTCGGTCTGTTCTATGGGACGAATCCCAGGTGGTTACGTGACCAATCATGTGTACACATGGGTGGACCCTCAGGGCCGCAGTGTGTCCCCACCACCAGACCTGCTGGAGCAGCATGGCTCAGGAGGAAGACTCTTGGACGTTCAGCAACATGGCCACACACACATTCGGCACGAGGGTGGTGAGAAGAAGGTGAATATCTCACTGGATGATGGGCGATCTTTGGGCTTGATGATCCGTGGAGGTGCTGAGTATGCTCTGGGCATTTATATCACCGGAGTGGACCGAGGGTCTGCTGCAGAGTACAGCGGACTAAAGGTAGGGGATCAGATTCTGGAGGTCAATGGGCGTAGCTTCCGGAGCATCTCTCATGACGAGGCCGTGCAGATCTTGAAGAATTCCCGCCACATGCTGATGACCATAAAGGACGTGGGGCGGCTGCCTCACGCACGCACTGTGGTGGATGAGACCAAATGGATTCCCAGTGCACAGATCGCTGAGAGCTCGGCCAATAGTAACACCCAGAGCATTCTGCCTGTTGATGTTGCAGCAGGAAGTTCAGGAAAGTCAATCTGTTGTAAAGGTGTCGTGCCAGCGGTCGGAGCGGTACGTGCAGGAGCCTGGAGCTCACTGGAGGAGCAGGCGTACATGCTtctgacagagacagagagacagaccaTGAGCTATTACATTCAAGAGTACCAGCGCGCACATATCGGGGTAGAGCCTCTGGCCATGGCCCTGTTTGAACTCTTCAACACACATGCAAAGCTGTCCTTGCTGGCTGAGGTGCGGACCCTGGTCGCTCCGCAGGATCTGGAGCGATTCGATGGGCAGGTGTTACATCACGAGATGGAAGCGTGGAGAGTACGGCACGGAGGCTCGGGCCTCCTGCACCCCGACTCTATCTGCGTCACCCATCCAGACGGCCACATTCCTGCTGTCTGCCAGCTGACCACCGCAGTCCCTGGCTACAACAAGAATGAGTGCAGGTTGGAGGGGAGTTTGATGCCACTTGAGGGTCTAAATTCTCTTCCTGATGTTTCTCTGgacAAGGTGCAGCCGTCAACCGAATCACCCCCCTCGTTCAAGCCTCCCCCTCCACCTGTCCGACACGCCAGCCCTAAAAATCAGACCAAACGACCTTCGTCCAAGCTGTCCCAGACCAATCTTCTCTTTACCGCCCCCTGCAGGCGGCATCAAGAAAACCACACCCACAATCACTCGCACTCGCCCTGCTCTGCTCACACCTCCCCGTGCACCATCCACCACACCACCTCCACCTGCTCCGTCCATCACACTCCTCCACCCTGCTCTCACCATCACAGCTCTCCACGGTCATTATCCTACCACGCCAGCCCTTCTTCTGGACCCCCGTGTAAAGATTTGGTTCAGTTTCTGATGAGCAGGCAGGCGGCAGTGCTCTCCCCGCACCTAGAGTCTCCAAACCGTTCCAGAGACGGAACCCCCATGATCTCTCCGCGCTCCTCTCCATCCATTTCTCCTTCGCTGCTAATGCCCGCGCCGCCCCCCTGTAGCCCCGAGAAGCTGGAGTGCTCGTCCTCTACACACAGCTGCGGCGCCACCCAGACCAGCCCGCTACACCCCGAGCCGGAGACGACAGAGGAAAGGCCTCAGCCCCAGCTACGAGGAGCCACGCTGTCCCAGCTGTCAGACAGCGGACAGACTCTGAGCGAGGACAGTGGAGTGGATATCGCAGAGGCTGGGGGGTTGAGTAAGGACAGCAGCCCGCGGCCAGGTAAACCTCCCTTCCTCCAGGTCACAGGTGACATACGCAGAGCGGAAGGACTCGCACAGGCCACCGCAAAACACATGGGAGTAATGGAGCCTACACTTGTACGGGTGCCCAAGTGTGCCAGTACACTGGGGATTGCTGTTGAAGGGGGTGCCAACACCAGACAGCCTCTGCCACGCATCGCCACCATACAGAAGGGGGGCTGCGCGCATATCTCCGGACAGTTACGGGTGGGTCAGGTGATTCTGGAGGTGAACGGCGTGTCGCTTAAAGGCATGGAGCACCGGGACGCAACTCGGGTCATCGCCGAGGCCTTTAAGACCAAAGACAAAGACTATGTCGACTTTTTGATCGCCGAGATCAACTCTGCTCTGTAGAAGTCGTCCCTCGAGAGTTTTGCTATTTTCCACTGCGAAGACCTTGCACTTTACGTCACGTCCACACAGAGGGGCTGAATGAGTCACGCTTGTCATATCTGAGTCACAGTTAGCTTAGAGTTCAAAAGCTGCAACACGCCCACCTTACGTCTGTGTTCTCGCTGTAAGAACACCTTCACTGAACCTCTGCAGAGCCGAGACTGTGGCTGATATGTTTGATAGGACGAGATCAGGGTTGTATCAAGTCTGTCAGATCTGtgccatacacacacacacacacacacacacactctaccgTTAGGTTCGGGGTCTGTATGATTTCTTATGTTTCTCTTATGCTGTCTTATCTGtctatattttagtatattttactTCGTATACCGTTGCTTATGGTATTTGTTGTTACatgatcatttttaattcactcCGATACGCCGATTTGGTGcttgaaaaacatttctcatcatCAACGTTAAAAACGATACTTCTTTGTGGAAACCTTAAAAGTCGATACGAgcattttcaggattctttgataaattaaaagttcaagagaacagcatttatttcattttgttttcttttttttttttataaaactaaaattttactttttcaatcaattttaaaacataccgaccccaaactttttaatgcTAGGGttgcatctatatatatataatcaaatccTTCATTACTTTCTGTTCATGTTTATTATAgctaatacatatatacagaaatatatttatacggaaatatataaatatctacaGATTTGCTAttacagttcttaaaagaaaatcacatatCATTTCAGTCGTAATATCAAATAGCATAGtcattgtatgtttgtttgttttcactctTCGTTGATTCCAAaggtctttatttatttatttttaatgaaaggaaCTGAATTCAGTGGAAGTAGTGAAATTAAGTGTTATTAATACGCTGTTGTAATATGTGAATGGAGATTTATTTCCGGACAGATGGAGCGAGGAGGAGGATTCGAGAGTATCGCACtgttttttcattctgttttttctgttcttttcctctctgtctctctcacaaaACCAAGCTCTTATATCAGTGTGCAAACTTCAAAGAGAGAAATAATGAAGAAATGcatagaagtatttttttgaagAGATTTGAAGAGATGTTCGGTGTCAGaattatatgtaaatgcatggCTCCTGATTATGCAACATACAGAGAGAGTTATTGTACATAGGTAAAATAATGTAaagctgtatatattttatttatgtaatatattttttgcacataCTGTTGATATAATGTTTTCAATGACtgcatcaaaaacattaaaacccTTAAATATGAAACCAAAACATCAATACTTAGAATAGTAACATAGAAGCATATTAGTTTCTCAACCCAGAGGTTGTTGTTCCCTTCagatatttaattcataaaccACATACCATTATCCAGACAGTCTGTCTCTAAGTTTATAAAGATTtgctttttgttcatttgttgcTTGTCATTTGTCGTACTTcgcaatgtgaaaaaaaaaacataatattgtaaCTTTACAGGAACTAAATTATCGTAGACTTTCAAAACAACACCATATAAAGACAGCGCACAATCCGAGGGTATCAATATTATGcctgaaatatttatgatttatgccAAACTGGAAAAGAgacttaaataaatatttaaagacgGAATTAAATGTCtgcacttattattattattattatttttcccctTGGTGAAATCGTATTGTTATCAGCAAAAAATGTGTGCCTCTGTTATCTGATGAAGTTGTGCTTTGGCGCCCTCGTGTGTTCAAATGAAGCACATGGTTTTAATCTTAAATGTTTGCAATGACAGTactatatctaaatatattatacCTCTAcctattatacatacataatgcaattaatcaatcttttgtttttataatatgacACCATTCAAAGTCGTGTAGGTCGTTTTAAACATtagcaaaacattattttaaacaaacaggtctgtggatgatgcagtcaatatgtgACTGCATTATGTATTGCAGTATCGAGAAAGACCAGCGATTTACGTGAGAATGTTACTGTTAGCTTTTAACACCATCATCCCATCACCCCTCCAGCccaaattaaaggaatagttcacccaaaaatgaacatacaagacattttgaagaaagtttgtaaccaggctgttttggctCACAGTTGATTTCTATAATAGgaaaatactatgaaagtcaaactttcttcaaaatatcttcatttgtgttcagcagaacaaagacatttatacaggtttgggaATATTctagggtgaataaatgatgacagaattttcatttttgggggaacTATTCCTTCAACTCAGCTCTCCGTGCCCGACTCCGTCTGTCAGTGGGTCACCAGCGTCCTGACCGGCAGGCGACAGCTAGTGAGGCTGGGAACATTTTCATCCAGCACCCATATAATAagcactggagctcctcagggctgtgttCTCTCCAcactgctcttctccctctacacCAACGACTGCACCTCTAAAGACCCCAAGCTCCTgaagtttgcagatgacaccACACTCATTCAGTACAGTGAcgagtctgcttacagacaTGAGGTAAAAGAGCTGGCTGTCCGGTGCAGTCTCAACAACCTGGAGCTCAACGTGCTCAAAACGGTGGAGATGACGATGGTCTTCAGGAAGAAACCCTCTCTCCCCCCCACACAACACTAttatactttaatttatttaacaaaacatgcttatttacattttaaatttgcgCATATCATACctgtacatgcatacatgtctatatattatgtttttgctattttgtacaatgtttttttatgtcttgTTGGAGCTTCTGTCACTTCTGTCATTTCTCttatgtgtaaacatacctggcaataaagctCATTCTGATTCTGAACATTAGATTATTACAACGAA

Function

NR:

description
PREDICTED: whirlin-like isoform X2

GO: NA

KEGG:

id description
K21879 WHRN, USH2D; whirlin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240078.1 True 8499 mRNA 0.44 12 8886982 8938072

Neighbor

gene id symbol gene type direction distance location
noxa1 LOC107709691,LOC107560237,LOC107681242,LOC107690672,LOC107587322 coding upstream 1118 8878270 ~ 8885864 (+)
cacna1ba cacna1ba,LOC107690670,LOC107757972,LOC107681248 coding upstream 70975 8725190 ~ 8816007 (+)
ehmt1a ehmt1a,LOC107709696,LOC107566127,LOC107681217,LOC107757960,LOC107690686 coding upstream 162676 8713852 ~ 8724306 (+)
arrdc1a LOC107566126,LOC107587470,LOC107690693,LOC107757967,LOC107709697 coding upstream 174206 8705207 ~ 8712776 (+)
LOC122344932 LOC107709690,LOC107566118,LOC107681226 coding upstream 182752 8702286 ~ 8704230 (+)
niban2b fam129bb,LOC107709838,LOC107560233,LOC107681249,LOC107715759,LOC107690674,LOC107587422 coding downstream 12312 8950384 ~ 8972068 (+)
npdc1b LOC107709839,LOC107560231,LOC107690676,LOC107681258 coding downstream 34845 8972917 ~ 8991023 (+)
traf2a traf2a,LOC107587320,LOC107690679,LOC107715757,LOC107560229,LOC107709841,LOC103036375,LOC108423724 coding downstream 70454 9008526 ~ 9016381 (+)
tncb tnc,LOC107715756,LOC107681236,LOC107690680,LOC107709842,LOC107560216 coding downstream 134708 9072780 ~ 9104866 (+)
b3galt8 LOC107709844,LOC107681239,LOC107560227,LOC107754785,LOC107587317,LOC107690696 coding downstream 167428 9105500 ~ 9107204 (+)
G34470 NA non-coding upstream 12287 8874095 ~ 8874695 (+)
G34466 NA non-coding upstream 22781 8862846 ~ 8864201 (+)
G34449 NA non-coding upstream 244301 8642191 ~ 8642681 (+)
G34418 NA non-coding upstream 321486 8564645 ~ 8565496 (+)
G34409 NA non-coding upstream 347264 8532539 ~ 8539718 (+)
G34472 NA non-coding downstream 193 8938265 ~ 8939370 (+)
G34480 LOC107560223,LOC107711009,LOC107681213 non-coding downstream 55824 8993896 ~ 9001220 (+)
G34689 NA non-coding downstream 308838 9246910 ~ 9248013 (+)
G34688 NA non-coding downstream 310187 9248259 ~ 9251790 (+)
G34725 NA non-coding downstream 422787 9360859 ~ 9433507 (+)
man1b1b man1b1b,man1b1,LOC107709694,LOC107681241,LOC107560236,LOC107757969,LOC107690671,LOC107587425 other upstream 15464 8864202 ~ 8871518 (+)
snx19a snx19a,LOC107597619,LOC107681657 other upstream 581536 8289720 ~ 8305446 (+)
spns3 spns3,LOC107597443,LOC107712368,LOC107664514,LOC107677447,LOC107722774,LOC107587440 other upstream 876383 8001578 ~ 8010599 (+)
p2rx1 p2rx1,LOC107598068,LOC107712377,LOC107664512,LOC107587372 other upstream 1089014 7754074 ~ 7797968 (+)
dpm2 dpm2,LOC107664400,LOC107712384,LOC107681851,LOC107598396,LOC107587395 other upstream 1212346 7672827 ~ 7674636 (+)
si:ch211-102c2.4 NA other downstream 858309 9796381 ~ 9799358 (+)
fam219ab fam219ab,LOC107744421,LOC107595023,LOC107673386,LOC107752501,LOC107672754,LOC107592322,LOC107673387,LOC107595025,LOC107744422,LOC107592323 other downstream 1126145 10064217 ~ 10139733 (+)
osbp2b si:ch211-106a19.1,LOC107687692,LOC107744438,LOC107726355,LOC107672777,LOC107592367 other downstream 1779459 10717531 ~ 10736059 (+)
senp3a senp3a,LOC107744451,LOC107687680,LOC107599939,LOC107672741,LOC107592295,LOC107726393 other downstream 1988751 10926823 ~ 10933753 (+)
map7d2a LOC107687666,LOC107592282,LOC107599951,LOC107754729,LOC107726367,LOC107672739 other downstream 2108407 11046479 ~ 11064446 (+)

Expression


Co-expression Network