pomt1 (LOC107720285,LOC107699719,LOC107587516,LOC107756274,LOC107555474,LOC107703250)


Basic Information

Item Value
gene id pomt1
gene name LOC107720285,LOC107699719,LOC107587516,LOC107756274,LOC107555474,LOC107703250
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 18914683 ~ 18921515 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240126.1
atgggCTATACTGGCCGGAAACACTAGAGCGCACACGCGCTACGTTCCGTCggtttatttacttgtttaagtattttttaagaCGAAGACTAAAGCCGTGGCTTACGCCAGAGACACGgctgtgtattttattaatgaagTCGAGTTTTAGCGATGGTCGGTATTCACTGCGTTTTGCGGGAGACGCAGCACATGTTCTCAAGAAGGCAGCAGCGTTCACCTATGATTGCGTAACTCTCGAGAAATTCACAACTACATCTAACCGAATCAAGCATGCAGTGTGTGAAACTGCCCATCAGTGTGGCAGTGAAGATCAATCTGCTGCTGGTGGCGGTCACACTCTCAGCTCTCCTGACCAGACTCTATGGCATTCACTTTCCTAAAGCTGTGGTGTTTGATGAGGTATATTATGGACAGTTCCTGTCTCTGTACATGAAGCAAGTGTTTTTCATTGATGAGAGTGGTCCGCCTTTTGGCCACATGATACTAGCTTTAGGAGCGTATTTAGGAGGATTTGACGGCAACTTTGTTTGGAACAGAATAGGAGCAGAATACACCAGTAATGTTCCTGTTTGGAGCCTTCGGGTGATACCGGCCCTCGCTGGCTCTTTCTGTATACCTCTTGCTTATCTTCTGGTGGTGGAGCTCGGATGTTCCCATTCCACAGCGCTGGGGGCCTGTGTGCTCCTCCTCATGGAAAACTCCTTGATTGTGCAATCACGCTTCATGCTGTTGGAGTCTGTTCTTATCTTTTTCCTGCTGTTAGCTGTACTGTCTTACCTCCGCTTCCACAAAGCACACAATTCATCTTTTAGGTGGTTTTGGCTTGTGACCTGTGGGGTCAGTTGTGCATGCGGAATTGGGGTAAAGTACATGGGTGTTTTCACATACTTTTTACTGCTTGGCCTGGCAGCTGTACACACCTGGCATGTCATTGGAGACAGAACCTTAAGCCATGGCAAAGTTGTGGTGCAGATTCTGGTTCGCTTCCTGGCTCTTGTGGTGTTACCCGTCATCATGTACCTTGGATTTTTCTATGTCCACCTTACCCTGTTGTATCGCAGTGGACCACATGACCAGATGATGAGCAGTGCTTTTCAAGCAAGTCTAGAGGGCGGTCTAGCTCGGATCACTCAGGGGCAGCCTTTGGATGTTGCTTTCGGCTCACAGGTCACTCTCCGCACCGTGTCCAGTAAACCTGTTCCCTGCTGGCTTCACTCCCACAAGGCTAACTATCCAGTCAGGTATGAAAATGGCCGTGGTAGCTCCCACCAGCAGCAGGTGACCTGCTATCCTTTTAAAGATGTCAACAACTGGTGGATTATTAAAGACCCTGGGCGGCACAGTCTCGTGGTCAGCAGCCCCCCCAGACCTGTGAGACATGGCAATATTATCCAGCTGCTGCATGGAATGACCTCTCGCTACCTAAACACACATGATGTTGCAGCCCCCATGAGTCCTCACTCACAGGAAGTGACTGGCTACATTGACTTTAATGTGTCTATGCCAGCTCAGAATCTGTGGAGAGTGGACATAGTGAACCGAGAGTCCGATAGAGAGATCTGGAAAACGATTTTATCAGAGGTGCGACTAGTCCACGTGAACACTTCAGCTGTTTTAAAGCTCAGTGGAGCGTCTCTGCCGGAGTGGGGTTTCAAACAGCTGGAGGTGGTTGGGGATAAGATTTATAAAGGCTACCAGCAGAGCGGCGTCTGGAACGTGGAGGAGCATCGCTATGGCAGAAGTCAGGAGCAGAAGGAAAGGGAGCTGGAGTTGAAATCACCTACACACAGCGACATCAAGAGAAACCTCACTTTTATGGCCAAATTTCTTGAGCTGCAgTGGAAGATGCTGACAGTAAAGAATGAAGAGTCTGAGCACAAATACAGCTCTTCACCTCTTGAATGGATCACAATGGACACCAACATTGCCTACTGGCTTCATCCTTCAAGTAATGCACAAATTCAGCTGATCGGGAATATTGTCAATTGGGCCATTGCAAACCTTTCCCTAGTTGTTTACTGTCTTATGTTTCTGACCTACTTACTAAGACGACGGAGGAAGGTTGAAGATATTCCTCAAGACTCTTGGGAACAGCTGATTTTGGCTGGTGTGATTTGTTTTGGAGGCTGGGCAGTGAACTACCTGCCGTTCTTCTTAATGGAGAAGACACTGTTTCTGTATCACTATCTTCCGGCACTTACCTTCAAGATCCTGCAGACACCCATAGTCATAGAGCACCTGTACATCCATGTATTGAGATCCCCAGCTCAAAGGAAAGCATTTGGTGGTGTTATTCTGGCGGTCCTTTGTTCAGTATACATGTCCTACCACAACCTGAGTCCTCTGACCTACGGCCAGCCAGCATTATCGTCAGACGAGCTTGCTGCACTGCGCTGGAGAGAGAGTTGGGATATTCTCCTAAGAAAACGCTGAAAtccatttgtttctttttgctcTCCAGAGATCTGTGAAATACAGTTTCTAGGGTCTAGTAcccaaatttaaaaatgtgaaaagctCTTTAATGAGAAATTATGCTGCTCAACCTCAAAACTCCAAACCAAATGGACTGTAAAGCACTATGTAGTGCTTAATTTATCATGCTCTTATGTTTACATATTCTGTTTGTATgtcaattttattgttttagggACTTGTACAACTAATAAGATGAGTTGCTTTTATTagaattcacttttatttaatccTTGCTAAACACTAACCAATTAAACTTGAAAATAaggaataaacatttttttatatcagac

Function

NR:

description
protein O-mannosyl-transferase 1 isoform X1

GO:

id name namespace
GO:0035269 protein O-linked mannosylation biological_process
GO:0016020 membrane cellular_component
GO:0004169 dolichyl-phosphate-mannose-protein mannosyltransferase activity molecular_function

KEGG:

id description
K00728 POMT, pmt; dolichyl-phosphate-mannose-protein mannosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240126.1 True 2771 mRNA 0.46 19 18914683 18921515

Neighbor

gene id symbol gene type direction distance location
LOC122345689 NA coding upstream 603 18900511 ~ 18914080 (+)
gcnt4a LOC107699693,LOC107720226,LOC107587561,LOC107703224,LOC107555473,LOC107756273 coding upstream 23377 18890017 ~ 18891306 (+)
LOC122345996 NA coding upstream 24748 18885057 ~ 18889935 (+)
ankrd31 LOC107699692,LOC107587543,LOC107720237 coding upstream 29798 18879039 ~ 18884885 (+)
cert1a col4a3bpa,LOC107720288,LOC107587519,LOC107703248,LOC107555488 coding upstream 47242 18847936 ~ 18867441 (+)
ubac1 ubac1,LOC107699722,LOC107587514,LOC107555477,LOC106579794 coding downstream 31862 18953377 ~ 18961721 (+)
rasgrf2b rasgrf2b,rasgrf2,LOC107720279,LOC107756301,LOC107703251,LOC108423655 coding downstream 93796 19015311 ~ 19068269 (+)
ckmt2b ckmt2,ckmt2b,LOC107720280 coding downstream 147390 19068905 ~ 19074630 (+)
tent2 LOC107720275,LOC107699727,LOC107587508,LOC107756276,LOC107703258 coding downstream 236344 19157859 ~ 19164155 (+)
cmya5 cmya5,LOC107699728,LOC107720274,LOC107703257,LOC107555495,LOC107756304 coding downstream 243002 19164517 ~ 19177886 (+)
G37540 NA non-coding upstream 164628 18678596 ~ 18750055 (+)
G37497 NA non-coding upstream 524617 18373499 ~ 18390066 (+)
G37501 NA non-coding upstream 526681 18386010 ~ 18388002 (+)
G37495 NA non-coding upstream 561218 18350686 ~ 18353465 (+)
G37492 NA non-coding upstream 634890 18279536 ~ 18279793 (+)
G37618 NA non-coding downstream 1787 18923302 ~ 18924676 (+)
G37619 NA non-coding downstream 3695 18925210 ~ 18925433 (+)
G37620 NA non-coding downstream 3922 18925437 ~ 18927002 (+)
G37734 NA non-coding downstream 366501 19288016 ~ 19288328 (+)
G37843 NA non-coding downstream 672555 19594070 ~ 19647075 (+)
arsk arsk,LOC107703223,LOC107720292,LOC107756297 other upstream 67009 18842819 ~ 18847674 (+)
LOC122345691 NA other upstream 1387239 17526024 ~ 17527444 (+)
LOC122344991 camsap1b,LOC107587696,LOC107672541,LOC107552625,LOC107720249,LOC107745551 other upstream 1541824 17364849 ~ 17372859 (+)
G37228 ncor2,LOC107742750 other upstream 2352942 16486620 ~ 16561741 (+)
G37227 NA other upstream 2353951 16474708 ~ 16560732 (+)
G37626 LOC107720210 other downstream 17298 18938813 ~ 18940895 (+)
msh3 msh3,LOC107720281 other downstream 40807 18962322 ~ 19014100 (+)
nrarpb nrarpb,nrarpa,nrarp,LOC108255347,LOC107595556 other downstream 785773 19707288 ~ 19710070 (+)
col27a1b col27a1b,col27a1,LOC107699687,LOC107720196,LOC107552608,LOC107731038,LOC107720245,LOC107672548,LOC107587699 other downstream 1046062 19967577 ~ 20035380 (+)
lix1 lix1,LOC107552634,LOC107699708,LOC107587723,LOC107672536 other downstream 1221768 20143283 ~ 20151686 (+)

Expression


Co-expression Network