nr2f1a (nr2f1a,nr2f1,LOC107671052,LOC107567418,LOC107699709)


Basic Information

Item Value
gene id nr2f1a
gene name nr2f1a,nr2f1,LOC107671052,LOC107567418,LOC107699709
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 18361873 ~ 18369522 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240148.1
ATGTTAGTGACATCTGAGGACATGGTTTGTGCACTGACTCGCGATCTCGAGACGGTATTGTTCCGTCAAATGACGTAAAACGTTAATGGATCCTTCACAGTTCGGATCTAGACGCCGCgatgaatatttttgtaattaagaCTACAGCTTCGAACAAAACACTTTCAACTTTGTGCTGCTCGCACCAGTCCTTCCGCCTCACGcgcatttgtttatatttcacgTGCGCGTATAGTTCGCCCCTCGCTTTCATCCCGTTTTCCTCCGCTTCTTTCTGGGGTTTCTTCCTCTTTTTGTGACAATAGACGGTCCATTCTAATCGGGTTTCAAAGTAAATAGCAGCGCAGGGGCGAGCGCAATGTAAATTGTGCTTGTCAGAGCCCTCAGTCGTAGGTAGCGAGGAGCGAGGACTCTAACCAATGGAGTGAAGGAGGCTTGGCTAACCTTAGCCTCCCATTTTCTCTCTCCCCCCTCGATGCAGGGTTCTGACCAGTCAGTCGCCTTTGATTATCAGTTGCCAGCAGCCCCTCTCTTGGCTCCTTGACACGAGCACCATATAAGGCGCAGCGATCTCCATAGAAACGTGTCAGTTTCAATAGTAGTGTCAAAGTTCACTATATACAGACATTCGCGCAGATCTCCGTTTCGGAAACATTGCTCCGCTGGTACTCCCGTTAAAACGCATTCTTTTTTGGGTCTCCGCTTCTTACATATTccattagttgttttttttctttttatcctcGCTCTGTTCCTACTGGAGAGGTGAAACTACATAGGCACTCGGGCgacgctgtttttttttttcttttgctggaCCAGATGAGCTTTATTCATGAACATAGATAGAGAAATCCGTTCTTCAGTGTTTCCTCCTCTCCAACCGCGAAGACGGAGAGAGGAGCAAGGAAGAGAAAAGAGGGGAATTTATTTCGCACGGCACTTTGGATCTCCGGTCCACCAGAAAGCTATTATTTTTGCTTCAACGTGAAGATTTTTTATTGCGGTATTTTTTAAGAAacccgattttttttttattacgtctGGGATCGCTTTCTCTCTACACGATTGGGTTCCCGAATGGCTGACTGCAATTTACCTTGGAACTGGCCTCCCGACAATTGCATATCCTGATCGGGTGCCTTTCTGTCGACTCCGGTATTTTGAATGTATTGATCGTTTTCTGcttctacttttttttccctatgAGATTGAGTGCTCCGATTTGAATTCGCGCTGCCGTTCGTCCAAGACTTCCCTTTTCCCTGCTCCGATATCCGAGCGACCAGTTCGCTTGAAAGCACTTTTCGGGCCCGAGATATGGCAATGGTAGTTAGCGTCTGGCGAGATCCGCAGGAAGACGTGGCCGGAGGACCTCCGAGCGGCCCCAATCCAGCAGCTCAGCCGGCGAGGGAGCAACAGCAGGCGGCGTCAGCGGCACCGCACACTCCGCAGACCCCCAGTCAGCCAGGACCCCCGTCCACACCGGGGACGGCTGGCGACAAGGGCAGCCAGAATTCTGGACAGAGTCAACAGCATATAGAATGTGTTGTTTGCGGGGACAAATCGAGCGGCAAGCACTATGGTCAATTCACCTGCGAAGGATGCAAAAGTTTCTTCAAGAGGAGTGTCCGAAGGAACTTAACGTATACATGTCGTGCCAACAGGAACTGTCCTATTGACCAGCACCATCGTAATCAGTGCCAATATTGTCGGCTGAAGAAGTGTTTAAAAGTGGGCATGCGGCGGGAagcGGTTCAGCGAGGAAGAATGCCTCCAACCCAACCGAACCCGGGCCAGTACGCGCTAACGAACGGGGATCCCCTGAACGGTCATTGCTATCTCTCCGGATACATCTCGTTACTACTTCGGGCCGAGCCTTATCCTACTTCTCGCTATGGCAGCCAGTGCATGCAGCCCAATAATATTATGGGGATCGAGAACATCTGCGAGCTTGCAGCTCGCCTGCTCTTCAGTGCTGTGGAATGGGCGAGGAACATCCCTTTCTTTCCCGACCTGCAGATCACCGACCAGGTGTCCCTGCTCAGACTGACGTGGAGCGAGTTATTTGTGCTAAACGCGGCTCAGTGCTCCATGCCCCTGCATGTGGCCCCGCTGCTCGCCGCCGCCGGCCTGCACGCCTCGCCTATGTCGGCGGACCGCGTCGTGGCCTTCATGGATCACATTCGCATCTTCCAGGAGCAGGTCGAGAAGCTCAAAGCGCTGCACGTCGATTCTGCAGAATACAGCTGCATCAAGGCGATAGTGCTCTTCACATCAGACGCTTGCGGCCTGTCAGACGCCGCACACATCGAGAGCCTGCAGGAGAAGTCTCAGTGCGCCCTGGAGGAGTACGTGAGGAGCCAGTACCCGAACCAGCCCAGTCGCTTTGGCAAGCTTTTACTGCGACTGCCTTCTCTCCGCACTGTCTCTTCGTCTGTAATTGAACAGCTGTTCTTCGTTCGCTTGGTAGGTAAAACTCCCATTGAAACCCTCATCAGGGATATGTTATTATCCGGGAGCAGCTTCAACTGGCCCTACATGTCCATTCAATGATCCGAATGAGCGAGTGAAACAAAAAGACTAAAGGACCAAAATTCTGCAAGCCCTTTCAAGAAGACTATATATATAGGACCTAATTTCTGACCACTTAGGAAGACACTCTTTTTTGTCTTCTGGGACCGAAATGGAATATGTAATGTACAAAGATTAAAGAACTGGACGTACTCCCGTGTAAATCCATCGCCGTCATCAAGAACACTCTCCATTTTGTAAAATACtagtctttattttcattttgggttttttttttcttttctttttttgtaaagaacaaaatacgtacaaataaaatgaagaacatCATATGCGCAGTAAACGAGCGAGACTTAGCGGGAAAGAAATTTCCAAGCAATTATAAGAAATGTCCTGTGTCTATGTAtctctgttttgtattttttctggTTCTAAACCAGTTTTTTCTGTGATTCtatactaatgatttttgataTAACCTTTTGCTTCTTATAATGAGTGCGATATATGTTGTTGAAGATATGTTCTCCAAGAATTAAAAATTGAAgtgagaatttaaaaataaagaaaaacgtTAGACAAATAAGACACAGTCTAATCGCAATGACAATTTCACTGATGGTTGAACCTTCCCCCACTTGATGCTATGGACATGCAACTTCGGCAAATCTGACCTCATGGACATTTTAAAGGAGAGGACACCggtgaaactttttttcttggtcgtatgtgtgtgcgagtgtgtgtgttgagtcAATCATCAGTCAGAgataaaagacatgaaaaatcaaaagcacttttaatatatcattttcaaatacattttgtttgtttcgtcTTGATATTTTcgctatttctttttttttttttttttattggatgttgcctttcatttttttgctcaaTCCATGATATGCCTGTGCAGAAGGGTCGCGTGAAGTTGTGTGATGGTGACTATACTATTAAAAAGGAAATAGGCAACACTG
>XM_043240149.1
tgttttgttgaaAACTGGGTATGTTAGTGACATCTGAGGACATGGTTTGTGCACTGACTCGCGATCTCGAGACGGTATTGTTCCGTCAAATGACGTAAAACGTTAATGGATCCTTCACAGTTCGGATCTAGACGCCGCgatgaatatttttgtaattaagaCTACAGCTTCGAACAAAACACTTTCAACTTTGTGCTGCTCGCACCAGTCCTTCCGCCTCACGcgcatttgtttatatttcacgTGCGCGTATAGTTCGCCCCTCGCTTTCATCCCGTTTTCCTCCGCTTCTTTCTGGGGTTTCTTCCTCTTTTTGTGACAATAGACGGTCCATTCTAATCGGGTTTCAAAGTAAATAGCAGCGCAGGGGCGAGCGCAATGTAAATTGTGCTTGTCAGAGCCCTCAGTCGTAGGTAGCGAGGAGCGAGGACTCTAACCAATGGAGTGAAGGAGGCTTGGCTAACCTTAGCCTCCCATTTTCTCTCTCCCCCCTCGATGCAGGGTTCTGACCAGTCAGTCGCCTTTGATTATCAGTTGCCAGCAGCCCCTCTCTTGGCTCCTTGACACGAGCACCATATAAGGCGCAGCGATCTCCATAGAAACGTGTCAGTTTCAATAGTAGTGTCAAAGTTCACTATATACAGACATTCGCGCAGATCTCCGTTTCGGAAACATTGCTCCGCTGGTACTCCCGTTAAAACGCATTCTTTTTTGGGTCTCCGCTTCTTACATATTccattagttgttttttttctttttatcctcGCTCTGTTCCTACTGGAGAGGTGAAACTACATAGGCACTCGGGCgacgctgtttttttttttcttttgctggaCCAGATGAGCTTTATTCATGAACATAGATAGAGAAATCCGTTCTTCAGTGTTTCCTCCTCTCCAACCGCGAAGACGGAGAGAGGAGCAAGGAAGAGAAAAGAGGGGAATTTATTTCGCACGGCACTTTGGATCTCCGGTCCACCAGAAAGCTATTATTTTTGCTTCAACGTGAAGATTTTTTATTGCGGTATTTTTTAAGAAacccgattttttttttattacgtctGGGATCGCTTTCTCTCTACACGATTGGGTTCCCGAATGGCTGACTGCAATTTACCTTGGAACTGGCCTCCCGACAATTGCATATCCTGATCGGGTGCCTTTCTGTCGACTCCGGTATTTTGAATGTATTGATCGTTTTCTGcttctacttttttttccctatgAGATTGAGTGCTCCGATTTGAATTCGCGCTGCCGTTCGTCCAAGACTTCCCTTTTCCCTGCTCCGATATCCGAGCGACCAGTTCGCTTGAAAGCACTTTTCGGGCCCGAGATATGGCAATGGTAGTTAGCGTCTGGCGAGATCCGCAGGAAGACGTGGCCGGAGGACCTCCGAGCGGCCCCAATCCAGCAGCTCAGCCGGCGAGGGAGCAACAGCAGGCGGCGTCAGCGGCACCGCACACTCCGCAGACCCCCAGTCAGCCAGGACCCCCGTCCACACCGGGGACGGCTGGCGACAAGGGCAGCCAGAATTCTGGACAGAGTCAACAGCATATAGAATGTGTTGTTTGCGGGGACAAATCGAGCGGCAAGCACTATGGTCAATTCACCTGCGAAGGATGCAAAAGTTTCTTCAAGAGGAGTGTCCGAAGGAACTTAACGTATACATGTCGTGCCAACAGGAACTGTCCTATTGACCAGCACCATCGTAATCAGTGCCAATATTGTCGGCTGAAGAAGTGTTTAAAAGTGGGCATGCGGCGGGAagTTCAGCGAGGAAGAATGCCTCCAACCCAACCGAACCCGGGCCAGTACGCGCTAACGAACGGGGATCCCCTGAACGGTCATTGCTATCTCTCCGGATACATCTCGTTACTACTTCGGGCCGAGCCTTATCCTACTTCTCGCTATGGCAGCCAGTGCATGCAGCCCAATAATATTATGGGGATCGAGAACATCTGCGAGCTTGCAGCTCGCCTGCTCTTCAGTGCTGTGGAATGGGCGAGGAACATCCCTTTCTTTCCCGACCTGCAGATCACCGACCAGGTGTCCCTGCTCAGACTGACGTGGAGCGAGTTATTTGTGCTAAACGCGGCTCAGTGCTCCATGCCCCTGCATGTGGCCCCGCTGCTCGCCGCCGCCGGCCTGCACGCCTCGCCTATGTCGGCGGACCGCGTCGTGGCCTTCATGGATCACATTCGCATCTTCCAGGAGCAGGTCGAGAAGCTCAAAGCGCTGCACGTCGATTCTGCAGAATACAGCTGCATCAAGGCGATAGTGCTCTTCACATCAGACGCTTGCGGCCTGTCAGACGCCGCACACATCGAGAGCCTGCAGGAGAAGTCTCAGTGCGCCCTGGAGGAGTACGTGAGGAGCCAGTACCCGAACCAGCCCAGTCGCTTTGGCAAGCTTTTACTGCGACTGCCTTCTCTCCGCACTGTCTCTTCGTCTGTAATTGAACAGCTGTTCTTCGTTCGCTTGGTAGGTAAAACTCCCATTGAAACCCTCATCAGGGATATGTTATTATCCGGGAGCAGCTTCAACTGGCCCTACATGTCCATTCAATGATCCGAATGAGCGAGTGAAACAAAAAGACTAAAGGACCAAAATTCTGCAAGCCCTTTCAAGAAGACTATATATATAGGACCTAATTTCTGACCACTTAGGAAGACACTCTTTTTTGTCTTCTGGGACCGAAATGGAATATGTAATGTACAAAGATTAAAGAACTGGACGTACTCCCGTGTAAATCCATCGCCGTCATCAAGAACACTCTCCATTTTGTAAAATACtagtctttattttcattttgggttttttttttcttttctttttttgtaaagaacaaaatacgtacaaataaaatgaagaacatCATATGCGCAGTAAACGAGCGAGACTTAGCGGGAAAGAAATTTCCAAGCAATTATAAGAAATGTCCTGTGTCTATGTAtctctgttttgtattttttctggTTCTAAACCAGTTTTTTCTGTGATTCtatactaatgatttttgataTAACCTTTTGCTTCTTATAATGAGTGCGATATATGTTGTTGAAGATATGTTCTCCAAGAATTAAAAATTGAAgtgagaatttaaaaataaagaaaaacgtTAGACAAATAAGACACAGTCTAATCGCAATGACAATTTCACTGATGGTTGAACCTTCCCCCACTTGATGCTATGGACATGCAACTTCGGCAAATCTGACCTCATGGACATTTTAAAGGAGAGGACACCggtgaaactttttttcttggtcgtatgtgtgtgcgagtgtgtgtgttgagtcAATCATCAGTCAGAgataaaagacatgaaaaatcaaaagcacttttaatatatcattttcaaatacattttgtttgtttcgtcTTGATATTTTcgctatttctttttttttttttttttattggatgttgcctttcatttttttgctcaaTCCATGATATGCCTGTGCAGAAGGGTCGCGTGAAGTTGTGTGATGGTGACTATACTATTAAAAAGGAAATAGGCAACACTG

Function

symbol description
nr2f1a Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Acts upstream of or within circulatory system development and endothelial cell proliferation. Predicted to be located in nucleus. Is expressed in several structures, including basal plate midbrain region; cardiovascular system; mesoderm; nervous system; and pharyngeal arch. Human ortholog(s) of this gene implicated in Bosch-Boonstra-Schaaf optic atrophy syndrome. Orthologous to human NR2F1 (nuclear receptor subfamily 2 group F member 1).
nr2f1 Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II. Located in cytosol and nucleoplasm. Implicated in Bosch-Boonstra-Schaaf optic atrophy syndrome.

NR:

description
PREDICTED: COUP transcription factor 1 isoform X1

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08547 NR2F1, TFCOUP1; COUP transcription factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240148.1 False 3521 mRNA 0.46 3 18361893 18369522
XM_043240149.1 True 3538 mRNA 0.46 3 18361873 18369522

Neighbor

gene id symbol gene type direction distance location
adgrv1 adgrv1,LOC107660972,LOC107669515 coding upstream 349079 17907408 ~ 18012794 (+)
polr3g polr3g,LOC107669519,LOC107557435,LOC107756241 coding upstream 462251 17896074 ~ 17899622 (+)
LOC122345176 LOC107720189,LOC107660966 coding upstream 768187 17591913 ~ 17593686 (+)
rasa1a rasa1,rasa1a,LOC107720192,LOC107553923,LOC107669512,LOC107753180,LOC108443998 coding upstream 775521 17554410 ~ 17586352 (+)
LOC122344741 otpb,LOC107720233,LOC107587559,LOC107699682,LOC107682870 coding upstream 984864 17374852 ~ 17377009 (+)
slf1 slf1,LOC107703243,LOC107756294 coding downstream 279243 18648765 ~ 18676675 (+)
fam81b fam81b,LOC107699714,LOC107703202,LOC107587521 coding downstream 436462 18805984 ~ 18814930 (+)
nol6 nol6,LOC107699715,LOC107587545,LOC107579382 coding downstream 463293 18832815 ~ 18842452 (+)
cert1a col4a3bpa,LOC107720288,LOC107587519,LOC107703248,LOC107555488 coding downstream 478414 18847936 ~ 18867441 (+)
ankrd31 LOC107699692,LOC107587543,LOC107720237 coding downstream 509517 18879039 ~ 18884885 (+)
G37495 NA non-coding upstream 8408 18350686 ~ 18353465 (+)
G37492 NA non-coding upstream 82080 18279536 ~ 18279793 (+)
G37491 NA non-coding upstream 83068 18278579 ~ 18278805 (+)
G37490 NA non-coding upstream 164331 18197203 ~ 18197542 (+)
LOC122345897 NA non-coding upstream 241225 18105099 ~ 18120648 (+)
G37497 NA non-coding downstream 3977 18373499 ~ 18390066 (+)
G37501 NA non-coding downstream 16488 18386010 ~ 18388002 (+)
G37540 NA non-coding downstream 309074 18678596 ~ 18750055 (+)
G37618 NA non-coding downstream 553780 18923302 ~ 18924676 (+)
G37619 NA non-coding downstream 555688 18925210 ~ 18925433 (+)
LOC122345691 NA other upstream 834429 17526024 ~ 17527444 (+)
LOC122344991 camsap1b,LOC107587696,LOC107672541,LOC107552625,LOC107720249,LOC107745551 other upstream 989014 17364849 ~ 17372859 (+)
G37228 ncor2,LOC107742750 other upstream 1800132 16486620 ~ 16561741 (+)
G37227 NA other upstream 1801141 16474708 ~ 16560732 (+)
LOC122345998 LOC107718355,LOC107676655,LOC107746825,LOC107680877,LOC107553589,LOC107552586 other upstream 1966311 16391797 ~ 16395562 (+)
arsk arsk,LOC107703223,LOC107720292,LOC107756297 other downstream 473297 18842819 ~ 18847674 (+)
G37626 LOC107720210 other downstream 569291 18938813 ~ 18940895 (+)
msh3 msh3,LOC107720281 other downstream 592800 18962322 ~ 19014100 (+)
nrarpb nrarpb,nrarpa,nrarp,LOC108255347,LOC107595556 other downstream 1337766 19707288 ~ 19710070 (+)
col27a1b col27a1b,col27a1,LOC107699687,LOC107720196,LOC107552608,LOC107731038,LOC107720245,LOC107672548,LOC107587699 other downstream 1598055 19967577 ~ 20035380 (+)

Expression


Co-expression Network