adamtsl2 (adamtsl2,LOC107699701)


Basic Information

Item Value
gene id adamtsl2
gene name adamtsl2,LOC107699701
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 19744545 ~ 19759281 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240188.1
ATGAGCTTGGCACCAGCCGGGAAAGTGTTTTCATGTAGGCGTTCCCAAGCGCTGCCACTCTCTTCCTTGGGACTGAAGGAAAGAAAGCGggagggaggaggagaggaagggGGAGAGGAGGGATGCAGGAGCACACCTTACCCTCTTTACAAGGCACATCCTCAGAACACACCATTAGAAAGCACTTATTCCGTTTCTTTTCTCCAAATATTCATTCCCTGCAGGATGAGGATCTGGTCAAGGGCCCAGTATGTGGAGAGCAGTCTGGTGCTGCTTGGTCTTGTAACGCTGGCTCTGTCTCTGGGCAATCTCTCAAGCAGAGGACAGGAAGAGGGTGCTGCCTCTAACAGTCTAGAGGACGGGCTTGAGGTGATCACGTACTGGTGGGGAGAATGGACCAAATGGACCGCTTGCACTCGTACCTGTGGAGGAGGCGTCATGTCACAGGAGAGACACTGTCTACAGCAAAGaaagaaaacaacaaccgGTAAAGACAACATGACATGCACAGGCAATGCAAAGAAGTATCATCTCTGCAATGCAAAGGAATGTCCTTCTACAGGAAGGAGCTTCAGAGAAGAGCAGTGCTGGTCATTCAACTCTCAGGTTTACAATGGAAAAAATTACCACTGGAAACCTCTCTATCCTGATGACTACGTTCATATCTCCAGTAATCCATGTGACTTGCACTGCACCACCTCTGATGGTCAAAGGCAGTTGATGGTACCTGCACGTGATGGAACATCTTGCAAGTACAGCAACTACAGGGGCGTGTGTGTCAACGGGAGATGTGAACCCATTGGATGTGATGGCGTCCTCTTCTCCCCCAACACTCTGGATAAGTGTGGCGTATCAGGGGATGGCAGCAGCTGCAGTCGCATTACTGGGAACTTTCGCCGCGGGGCTTCTACTCTAGGTTATTCTTTCATAACTCAAATCcctgaaggatcatgggacaTCCAGATTATAGAGAGGAGGAAGTCTGCGGATATCCTGGCTGTGACTGACCAAGCAGGGAACTTTTTCTTCAACGGAGCATATAAAGTGGACACCCCTCAGAACTTCCATGCAGCAGGGACCATTTTCAAATACCGGCGGCCTACTGATGTTTATGAGACGGGGATCGAGTACATCGTGGCAAAAGGGCCCATCGATCAGCCCATCAATGTTCTGGTCTGGAACCAAAATGGCCAAAACCCTTATATCACCTATGAGTACACAGTGATGAGGGACTCTATGGCTGCTGTCTCCCAGCCCCCCATTTACACGGGCCCTCAAGGAGGATCCAGTCTGGTGTCTGTGGAAATTGGGAGTGTTTTACACCTTAATGAGAGCGTGCATGATAAGACAAGCACCGGCCCGCGAGCTGTGGAAGGACAAAAGCCTGGACAGGAAACTAATGAAGTGTATGAGACGGCTAACATTGACTGTAATCAGGATGCTAACACACAAGTCCAGTATACAGAGGGGAACTGCAGCTGGCCCAGTGGAGTAGGAGCCCCTGGCGTAGCACCAATCAGCAGACCTGCAGAGGACATGGTAAACTCTGAAAACCTCATCTGGAGAGTGCTGCTGGGCGAGCGGATTGGCTCAGACGGTGTTCTTGCAAACATCTCAACCAATCAGCTTCTTACTCGTAGAGATGGCTTGTCATCTGAAGGCCCACTGGAGTTAGACTACAGCAGTCTTGAACAAGCCGGTCTTAATGGCTCACTGCTTGAGTTCACCTTCGGGCAACGTCGAAATGACACAGGGGACTTCCTGTTCCTAAACAGAACTGTTACAACCATTTTGCGCAATCGCAGCAATCGCACGAGGAATAACCAAAGGCTCCTTCAGAAGAACAAACTGAGCGCTGCTGACATGTACCGCTGGAAGCTGTCCTCACAGGAGCCCTGCAGTATGACCTGCTCGATAGGTGTGTCGAAATCACTTGCCATGTGTGTGCGGTATGATGGCATCGAAGTGGATGATGTTTATTGTGATGCTTTGACTCGACCAGAGCCAGTTCATGATTTCTGCATTGGCAGAGAATGCCAGCCAAGATGGGAGGCGAGCAGCTGGAGTGAGTGTTCTCGGACTTGTGGAGAAGGATTCCAGTTTCGTCTTGTGCGTTGCTGGAAGATGCTGGCTCCCGGCCTAGACAGCTCCGTGTACAGTGACCTCTGTATAGAGGCACAGCTAGAGCGCCCTCCAGAGCGCCGGGCCTGTAAGAGCCCCACTTGTGGCCCTCAGTGGGAGGTAGCTGAGTGGTCAGAGTGTCCTGCTAAATGTGGTCGAAGGGGTCTGGTCACGCGAGAGGTCAGATGCTCAGAGGAAACCCATCCGTGTGATGAAGCAACTCACCCAGCCTCTACCAAAAACTGCACCGGGCCTCCATGTGAACGCCAGTGGACAGCGTCTGAGTGGGGACCGTGTTCTGGCAACTGCGGGCATGGAAAAACAGTGCGGCACGTGTATTGCAAAACACCGGAGGGCCGAGTGGTACCTGAGTCTCAGTGCTCACCCGAGAACAAACCTCTGGCCGTTCATCCCTGCGGAGACAATGAATGCCCTCCACACTGGCTGGCCCAAGACTGGGAGAGGTGCAACACAACATGTGGACGCGGTGTGAAGAGAAGGACCGTGCTGTGTGTCGGCATCACAGGTGGGAAGGTCCAGATCAACGACGGTGAGGAATGTGACGGCAGCAAGCAACCAGTCGATGAGGACACCTGCTTTGAGAGGCCTTGTTTCAAGTGGTACACAACGCCATGGTCTGAGTGCACCAAGACTTGTGGTGTCGGCGTGCGAATGAGAGACGTGAAGTGTTATGAAGGAAGAGAGCTTGTTCGTGGATGTGACCCTTTGACCAAACCTGTTAACAAGCAGACCTGTGCACTTCAGCCCTGCCCCACCGAACCCCCAGATGAAAACTGCCAGGATCGTCCCACCACCAACTGCTCGCTGGCTCTGAAGGTGAATCTGTGCAGTCACTGGTATTACAGCAAGGCCTGTTGCCATTCTTGCCGCAATCTTCGAGCTTCCTAGCTGGTCTCCTCCGCTCAACTTTTCATCTGTTCATGTTGTCTGCAATGTGCCCGTTCGAGGATCGCAGCAAGGGAAATCCGAATCggtttttgtttatatcttAAGCTAGCTCCGTAAAACTGCGTTACTGTCAGCATTACAAAAATGATACCTACTTCATGACAATGTCCTGTGATTGTGGGATACAGTAAGGAAATATTAAGTTATTTGATTATTGCTCAGAGGATTATATTGCATGtcttaaaagtatttattattcatcagGTTTTATTGGACATTTATTATGTGGCAGTGGCGGAGGTGGATACTGAATGTTACCTCTGGCTGAAGATGGCTGATTTAGTACTGTACATCCAAACACAGGCTGAGCCTCAAGCCACTGCTGGCTCTTACGCTCTACTGTTTACTTTATCCGGTTTAACTATTGCTGGACCTAGGCTTATGTTAATTTATTGGTCACAGCGGTAGTTTTATTGGGTTCTCTCATTCTGTATGTAtcccatttttgtttcattcatttgatttttgatGGACAGTGGATTTAGAAGAGCTTGACATACCCGAGTCATTTTATCCTTGTCATTGAGTGAGTCCTGACACTTGAACGTGCTATGGTTGAAAATGTATCTGATTCACGTATTGTTTCACTAAGACACACTTAACCAAATGTATTGTACTACCTTACCTCAAGTACAAAAGGCGATCAAATGTAAGTCGTTTGATTTTCTTGTAGAAAAACGTTTGTGTACctctcaaaatattataaataataaatatta

Function

symbol description
adamtsl2 Predicted to enable metalloendopeptidase activity. Predicted to be involved in extracellular matrix organization. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Human ortholog(s) of this gene implicated in geleophysic dysplasia 1. Orthologous to human ADAMTSL2 (ADAMTS like 2).

NR:

description
PREDICTED: ADAMTS-like protein 2

GO: NA

KEGG:

id description
K24430 ADAMTSL2; ADAMTS-like protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240188.1 True 3809 mRNA 0.49 21 19744545 19759281

Neighbor

gene id symbol gene type direction distance location
LOC122344990 ttc16,LOC107699760,LOC107720230 coding upstream 11073 19726820 ~ 19733472 (+)
mboat4 LOC107720232,LOC107672543,LOC107567140,LOC107756285 coding upstream 79873 19659663 ~ 19664672 (+)
coq2 coq2,LOC107587489,LOC107699757,LOC107756326,LOC107567138,LOC107672553 coding upstream 95279 19645537 ~ 19649266 (+)
prlrb LOC107720254,LOC107756284,LOC107672558,LOC107567136,LOC107587530 coding upstream 114725 19619341 ~ 19629820 (+)
cplx4b cplx4b,LOC107587492,LOC107567130,LOC107672561,LOC108423624,LOC107720257,LOC107699754 coding upstream 136488 19605980 ~ 19608057 (+)
notch1b LOC107720248,LOC107567148,LOC107699763,LOC107672539,LOC107745520 coding downstream 35515 19794796 ~ 19832854 (+)
camsap1b LOC107720249,LOC107552625,LOC107672541 coding downstream 78474 19837755 ~ 19860160 (+)
LOC122346028 LOC107672526 coding downstream 101670 19860951 ~ 19864951 (+)
LOC122345916 NA coding downstream 195174 19954455 ~ 19960667 (+)
sh2d3cb sh2d3c,LOC107731039 coding downstream 279690 20038971 ~ 20047598 (+)
G37843 NA non-coding upstream 97470 19594070 ~ 19647075 (+)
G37734 NA non-coding upstream 456217 19288016 ~ 19288328 (+)
G37620 NA non-coding upstream 817543 18925437 ~ 18927002 (+)
G37619 NA non-coding upstream 819112 18925210 ~ 18925433 (+)
G37618 NA non-coding upstream 819869 18923302 ~ 18924676 (+)
G37951 NA non-coding downstream 430 19759711 ~ 19760204 (+)
G37956 NA non-coding downstream 35162 19794443 ~ 19867398 (+)
G37958 LOC107745529,LOC107672542,LOC107720246,LOC107552607 non-coding downstream 113961 19873242 ~ 19874144 (+)
G38082 NA non-coding downstream 368120 20127401 ~ 20392624 (+)
G38091 LOC107699781,LOC107552636,LOC107587661,LOC107672574 non-coding downstream 411693 20170974 ~ 20552306 (+)
nrarpb nrarpb,nrarpa,nrarp,LOC108255347,LOC107595556 other upstream 34475 19707288 ~ 19710070 (+)
msh3 msh3,LOC107720281 other upstream 730445 18962322 ~ 19014100 (+)
G37626 LOC107720210 other upstream 803650 18938813 ~ 18940895 (+)
arsk arsk,LOC107703223,LOC107720292,LOC107756297 other upstream 896871 18842819 ~ 18847674 (+)
LOC122345691 NA other upstream 2217101 17526024 ~ 17527444 (+)
col27a1b col27a1b,col27a1,LOC107699687,LOC107720196,LOC107552608,LOC107731038,LOC107720245,LOC107672548,LOC107587699 other downstream 208296 19967577 ~ 20035380 (+)
lix1 lix1,LOC107552634,LOC107699708,LOC107587723,LOC107672536 other downstream 384002 20143283 ~ 20151686 (+)
G38092 LOC107699781,LOC107552636,LOC107587661,LOC107672574 other downstream 425754 20185035 ~ 20513916 (+)
LOC122345823 LOC107740804,LOC107665032,LOC108255802,LOC107672563,LOC107731037 other downstream 525336 20284617 ~ 20297222 (+)
LOC122345834 lix1,LOC107587723,LOC107672536,LOC107699708,LOC107552634 other downstream 648487 20407768 ~ 20416507 (+)

Expression


Co-expression Network