vps37ba (vps37b,LOC107673398,LOC107594993,LOC107709855,LOC107656485,LOC107587312,LOC107721558)


Basic Information

Item Value
gene id vps37ba
gene name vps37b,LOC107673398,LOC107594993,LOC107709855,LOC107656485,LOC107587312,LOC107721558
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 9330333 ~ 9340363 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240257.1
CCTCCTGTCGTCTTCCGGCTGAAAATAACAGCTTTGCCCAGTCCGACCGCGATCGACGGATAGAGTTGAAAGTGTGAAAGACGCCGCTGTGCCAGATATGGCTGGCTTCGAGAATAAGTTAAGTTCTTACACCTTAACTCAGTTAAACGAACTGCTCGAGGATGACGAAAAGCTCAACAAATTTATCGACGACTCGGAAGAGattaAAGGACTACAGCAGAACAAGGAGATGACGCTGGCTAGTAACCGTCTTCTGGCAGAGCAGAACCTTACACTGCAACCCAGACTTGACCACCGAAAGAATGAACTGACCGGTCGGTACCGCAACCTTCAAGAGATGTTTGAGGCCTATCAGCTGCGCAAGTCCACTCTAGACGACAGATCTGGAAACACTCCCTTAGACACACTCCTCGCACTCCTACAGGCAGAAGGAGCCAAAATCGAGGAAGAAACTGAGAACATGGCTGATTCACTCCTCGATGGTGCTTTCCCCCTGGACACATTTATCGACGAGTATCAGAGTAAAAGGAAGCTGGCGCACATACGCAGAGTCAAGATAGAGAAGCTCCAAGAATTGGTGCTGAAGGGACACCACATGGCCCCAGCTGCTCCTCAGGCCTCTCGTGCTCAGGACCTTCCCTCCAGGCCAGCAGCTCTCCATAGAGAGGTCAATGGTTCCCCCATGCCGATGCCCCGGCGGGCTCCTCCTCTTCCCCCAATTAAAGTCCCCCATACTCCTCCTGCTCAGCCCCCCGCAGCCGTCTCTTACCCTCCTACTTCTCCGTTCGCTGCGGCCTCTCCATTCCCTCCCACTTCTCCATACCCCCCGATTCCCCCTAGAGTAGGAAACACACCACCCGTTCTTAACCAGGGATACCCCAGCATGTACATGCAGCAATACGCCCCAGCTGTGCCCCAGAGAGCCCCTCCACGCATGGCACCCCAGCCAGGCTTCATCATGCAGTGAGCAAAGAACATTACGTtctatggagaaaaaaaacgaaatgcaCACTGGACATTCATTTAAGCCTTTTGTAGGTCCTTCAAGCTGCACGTTATTAAATATTGTGCGCCGAGATGAAGTCTTGTCAAGTGTAAAATTAACAAGGCTTTACTGCAATCAAAGGGGCATCTGCAACAGGATCTTCAATTTGCACTTTAGACTACTTTTGTATTTGATCGGTCATGGCTGGTTATGGAGTCATGCTGTTTCCGTTCTGCCCTTCTCAGTAGTGTTAGTTCAAGTAAAAAAATTCACATGAGCCTCAGGGGCCTCCATGCGTAATGAAGACATCAAAGTTCAAGAACAGGCGTTCTGTTAGGCCATCTAGACAGATACGAAGAGCTatgatttgatgttttaatcTGAGTTGTCAAGTTCATGCTAATTTGTCAGGTCAACCACTTTAATATCTTCTGGCATTTCATGCCTGAAAAAGCTGCTTTAACAAAACAGTAAAGCCTATGCAAACAGACTGAGACCGAACTGTGTTTTTTGGGAGGGGGAGCAAACCATTTTTGCTCTTTAGGTCTTCTCAGACCTGCAGTCAAAGATgcgatttgttttttttccagtgaatCCTGTTAGCAAAACAGAGCTTAAATGCGGATGAAGTCATTCGGTACTGATGTGGTGGATGGGATCAGAGCTACCGCTATAACTGAGAGAGCCTTATGTCTCAGATACAAGTTCGCACTGGAAGCAGCTTATTGGCTAGAATTTGAAAGGAGTGCGAGTAAATTGTAGTATGTGTTGGGGgaaaaaagtgcaaatgagTTGTTTTAGGATTAAGCGTTAACATTTGTGAAGCATACGTGCTTGCAATGTCATTACCATGCGTACTTAAACTGACGTTGATGCATAATTTACCATCTTAATGTTTGTAACTAACACCATAATCCTCCTCGTGTTTATTTTTGCCATCTGGTGTGAAGATGTTCATTGGAGATGCGCTTCCTTTCCATAAGCCCCACatattaattgatatttaatatatataaactaatatagCCAAACTATTTAACCCATAATCTGACTTGCCTACACCATCAGGTCTGTTACATATCATATCTTGGTTACTGTCCTCAATATTGTAGTATAACCTTCTTTCATGCCTTTTGTTTTCACCCTGCAACTGTTTTCACTATGTACGTTCTGGTTTCTTCATGTGTTTGCCGCTGAAAAAGCCACTTTGTGCCTAAGCTGGGTATTAAGATGAAGACTTGTTCACTGTGtcgaggagtgtgtgtgtgtgtgtgttcgtattTCTCCTCACCTTCCCGTTCTAAAGCAGATTTCTGTGACGATTAGACATTTCTTTTACAACATATATGCTGTTTACGCAGGTACATCTTTACAAGTGCTCTTTTCCTAAATATCCATTGTATTTACTCGACCGGTTAGAGCCATCATTACTTTGCCTCAGATTCAGGAAGCTGACATGATAGAAATGTTGTTTGGATGAAGTCCTCTCTTTAATCACCGGTGCTACTACATTCATTTAATGAGCTGAACCGAGATGATGTTAGTACGCAGGCTCTGTTTGAATTAAATCACTCTGTTTGTCAGGCTCGGGTTTGGTATCTGCTTTACGTCAATGCTGATGAGCACCAGATCGAGAGGTGGAATTATTTGAGTTCCTCGTGAATCAGGCTGCATTATGTCTAGACATTGGTTAAATACCTGTGAAAACCTTTATGTACTATGACAGGATTGCCAACCATCTGGAAAAACCAGCATCCACCcttaaaaactgtttgtttgtttgtgtataaacatgttctttctttgtcttaaaaataatgaatgctaGGTTTGTAAAAGGTAACTCGGCTGTATGCTTTTGCTGGCAGTAAAATAGTGTTTTATACTTTCCTCATGTAAAATATGGAGACTTAAGTGCTAGGTAATGTCTGTTCAAAGTTGGTAGACATGGTATGAAACTGACATCTCcattttaaagataataaatgatatccCATCGCTTTTCTGTGA

Function

symbol description
vps37b Enables calcium-dependent protein binding activity. Involved in positive regulation of viral budding via host ESCRT complex and positive regulation of viral release from host cell. Located in endosome membrane; midbody; and plasma membrane. Part of ESCRT I complex.

NR:

description
PREDICTED: vacuolar protein sorting-associated protein 37B isoform X1

GO: NA

KEGG:

id description
K12185 VPS37; ESCRT-I complex subunit VPS37

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240257.1 True 2995 mRNA 0.44 4 9330333 9340363

Neighbor

gene id symbol gene type direction distance location
abcb9 abcb9,LOC107709851,LOC107721545,LOC107656484,LOC107587418 coding upstream 489 9324220 ~ 9329844 (+)
zgc:113436 zgc:113436,LOC107656483 coding upstream 6795 9319497 ~ 9323538 (+)
slc4a5a slc4a5,LOC107709849,LOC107721547,LOC108434517,LOC107656495 coding upstream 13792 9295196 ~ 9316541 (+)
zgc:110329 zgc:110329,LOC107673367,LOC107709832,LOC107594991,LOC107587313,LOC107721550,LOC107656494,LOC108434515 coding upstream 42805 9279117 ~ 9287528 (+)
zgc:162952 zgc:162952,LOC107681237,LOC107709843,LOC107715755,LOC107690681 coding upstream 206456 9107949 ~ 9123877 (+)
ppp3cca ppp3cca,LOC107709853,LOC107673394,LOC107656499,LOC107721549 coding downstream 1102 9341465 ~ 9371922 (+)
tcima zgc:110340,LOC107587466,LOC107594995,LOC107709856,LOC107673427,LOC107656486 coding downstream 60296 9400659 ~ 9401660 (+)
drd7 drd7,LOC107709833,LOC107594998,LOC107673378,LOC107721546,LOC107659284 coding downstream 219250 9559613 ~ 9561632 (+)
htra4 htra4,LOC107750178,LOC107672779,LOC108434275 coding downstream 400788 9741151 ~ 9750443 (+)
lman2lb LOC107709866,LOC107673435,LOC107595003,LOC107672798,LOC107592340 coding downstream 427892 9768255 ~ 9772485 (+)
G34688 NA non-coding upstream 78543 9248259 ~ 9251790 (+)
G34689 NA non-coding upstream 82320 9246910 ~ 9248013 (+)
G34480 LOC107560223,LOC107711009,LOC107681213 non-coding upstream 329113 8993896 ~ 9001220 (+)
G34472 NA non-coding upstream 390963 8938265 ~ 8939370 (+)
G34470 NA non-coding upstream 455638 8874095 ~ 8874695 (+)
G34725 NA non-coding downstream 20496 9360859 ~ 9433507 (+)
G34747 LOC105896809,LOC106958509,LOC107671222,LOC107690788 non-coding downstream 138242 9478605 ~ 9565907 (+)
G34840 NA non-coding downstream 424773 9765136 ~ 9765347 (+)
G34841 NA non-coding downstream 425607 9765970 ~ 9766349 (+)
G34842 NA non-coding downstream 426931 9767294 ~ 9767821 (+)
man1b1b man1b1b,man1b1,LOC107709694,LOC107681241,LOC107560236,LOC107757969,LOC107690671,LOC107587425 other upstream 458815 8864202 ~ 8871518 (+)
snx19a snx19a,LOC107597619,LOC107681657 other upstream 1024887 8289720 ~ 8305446 (+)
spns3 spns3,LOC107597443,LOC107712368,LOC107664514,LOC107677447,LOC107722774,LOC107587440 other upstream 1319734 8001578 ~ 8010599 (+)
p2rx1 p2rx1,LOC107598068,LOC107712377,LOC107664512,LOC107587372 other upstream 1532365 7754074 ~ 7797968 (+)
dpm2 dpm2,LOC107664400,LOC107712384,LOC107681851,LOC107598396,LOC107587395 other upstream 1655697 7672827 ~ 7674636 (+)
si:ch211-102c2.4 NA other downstream 456018 9796381 ~ 9799358 (+)
fam219ab fam219ab,LOC107744421,LOC107595023,LOC107673386,LOC107752501,LOC107672754,LOC107592322,LOC107673387,LOC107595025,LOC107744422,LOC107592323 other downstream 723854 10064217 ~ 10139733 (+)
osbp2b si:ch211-106a19.1,LOC107687692,LOC107744438,LOC107726355,LOC107672777,LOC107592367 other downstream 1377168 10717531 ~ 10736059 (+)
senp3a senp3a,LOC107744451,LOC107687680,LOC107599939,LOC107672741,LOC107592295,LOC107726393 other downstream 1586460 10926823 ~ 10933753 (+)
map7d2a LOC107687666,LOC107592282,LOC107599951,LOC107754729,LOC107726367,LOC107672739 other downstream 1706116 11046479 ~ 11064446 (+)

Expression


Co-expression Network