LOC122345838 (fam78aa,LOC107731022,LOC107672534,LOC107740833,LOC107552624,LOC107665027)


Basic Information

Item Value
gene id LOC122345838
gene name fam78aa,LOC107731022,LOC107672534,LOC107740833,LOC107552624,LOC107665027
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 20308522 ~ 20311450 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240325.1
atgaCTGTTGAACGCCTCCGACTCAAAACTACACTACCCAGGATGCAAAACGTCGCCAAGAAGGGAAGTCTAATTCTAAGCCGCTTGGATAAAAAAAGCCAACAGCTGAAGTATTGTATTACACCAGAGGAACCTGACTAGCCTATAATAGGACAAGGGCGACACAAAGTAACCCGACTGGTCACGCTCTGTAAATCTCTCAGATATGACGCGGAAATTAAGAGCACCGACATTTgatttgacattaaaaatgttggtCTCAAGTTATGCCAGAAGACGCAGCGTGGAGTTGGACCTGTAACGGGACTGTGGATTTAAACTTGAAGTAATGTTGCTTGTTCTTCCTGTCATCCTGAAGGACTGGAGCTAGTCTGAAGAGGCTCCGCCATGGGATGTGTACAGAGTGTGAAACTCAAGCCCAGTTTTCATGAGAACATCACGGTCCTGGAACTGCAAGCCTCCATTGATCCCAGCCCGACTGTCATCGATGAGTCCTCTAATGTGGTTCTGCGATACCGCACGCCTTACTTCAGGGCATCGGCTCAGGTGCAGGTGCCACCCATGCTCTGCAAAGAGATCTGGACCGTTGGCTGGATTCAAGCTTGCAATCAGATGGATTTCTTCAATATATATGGAAGCGAAGGAGTATCCAGCTGGGAGCTTCCAGAGCTAAAATGTGGGCGGATCCAGGCCATTAGTGATTCAGATGGTGTGAATTATCCCTGGTACGGCTGCACCACTGAGATGTACACAATAGTGGGTCCCACTAAGAAGAGCACCAAACTCACCGTCAGCATGAATGACAACTTCTGCCCAAGTGTGACGTGGAGTGTCCCAGTGGGCACCACCAGCAGTCCCCCTCTCCTGAGCTCCATCCAGAGGGACCAGCGCTTCACCACGTGGCTAGTGGCCATGAATGAAACCACAGCTGAGATGGTGCTACTCCGAAGCATCCGCTGGAGGATGCAGCTCTGCATTAAAGTGGATCCAATGAAGCCTCTGGGTCAGAGAGCCACAGTTGTGGAGCCTCTGATCCAGGAACAGCCTCAAGTCCTAGTTAGAAATGAACCCATCCCAACAAACGCCTTGCTTAAGCCTAATGCCAACGATGCCCAGGTTTTAATGTGGCGGCCTATAAATGGGGACCCCATTGTGGTCATACCCCCAAAATATTGAGCTAATGAAGGGTATTTCAGTTAAATGAAGAATGGCATGGAGTGTGTGAGAATAATAGTCAACAGGCTAACTATGGTTTTAAAGGATGGTTTTAAACGAACAAATGtactatttgtgtatttattgatGGTTGATAGGCTGTTTGAAAGGACAGTCCACTTAAAAATTAAGATTCTCTCAT

Function

symbol description
fam78aa Orthologous to human FAM78A (family with sequence similarity 78 member A).

NR:

description
PREDICTED: protein FAM78B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240325.1 True 1357 mRNA 0.48 3 20308522 20311450

Neighbor

gene id symbol gene type direction distance location
rxrab rxrab,LOC107660328,LOC107672569,LOC107740802,LOC107731035,LOC107552637,LOC108255946,LOC108423686,LOC103046247 coding upstream 29333 20232184 ~ 20279189 (+)
LOC122345846 LOC107587725,LOC107660331,LOC107672538,LOC103911143 coding upstream 90474 20211867 ~ 20218048 (+)
zbtb26 si:ch211-236k19.4,LOC107552622,LOC107740829,LOC107699705,LOC107672535,LOC107731026,LOC107587659 coding upstream 181135 20125104 ~ 20127387 (+)
krt1-c5 krt1-c5,LOC107740828,LOC107699777,LOC107552621,LOC107672537,LOC107731028 coding upstream 184190 20117169 ~ 20124332 (+)
lhx6b si:ch211-236k19.2,LOC107731013,LOC107672524,LOC107580313 coding upstream 192684 20112320 ~ 20115838 (+)
LOC122344786 gpsm1a,LOC107740834,LOC107595532,LOC107587727,LOC107672581 coding downstream 57595 20369045 ~ 20370240 (+)
LOC122345840 cmlc1,LOC107095684,LOC103473836,LOC105934481,LOC102226792,LOC103150158,LOC103390188 coding downstream 67439 20378889 ~ 20379665 (+)
LOC122345824 LOC107740804,LOC107665032 coding downstream 353483 20664933 ~ 20677943 (+)
LOC122345098 gpsm1a,LOC107587727,LOC107595532,LOC107672581 coding downstream 422172 20733622 ~ 20739157 (+)
LOC122345842 gpsm1a,LOC107587727,LOC107595532,LOC107672581 coding downstream 462949 20774399 ~ 20783388 (+)
G37958 LOC107745529,LOC107672542,LOC107720246,LOC107552607 non-coding upstream 434378 19873242 ~ 19874144 (+)
G37956 NA non-coding upstream 441124 19794443 ~ 19867398 (+)
G37951 NA non-coding upstream 548318 19759711 ~ 19760204 (+)
G37843 NA non-coding upstream 661447 19594070 ~ 19647075 (+)
G37734 NA non-coding upstream 1020194 19288016 ~ 19288328 (+)
LOC122345857 NA non-coding downstream 8392 20319842 ~ 20320418 (+)
G38112 LOC107552640,LOC107740808,LOC107731062,LOC107665013,LOC107672520,LOC559520,LOC107587663 non-coding downstream 11210 20322660 ~ 20324555 (+)
G38113 qsox2,LOC107740821,LOC107665046,LOC107552641,LOC107672576,LOC107731056,LOC107587664 non-coding downstream 14879 20326329 ~ 20707466 (+)
G38114 NA non-coding downstream 26780 20338230 ~ 20708607 (+)
G38093 NA non-coding downstream 220774 20532224 ~ 20560009 (+)
LOC122345823 LOC107740804,LOC107665032,LOC108255802,LOC107672563,LOC107731037 other upstream 11300 20284617 ~ 20297222 (+)
lix1 lix1,LOC107552634,LOC107699708,LOC107587723,LOC107672536 other upstream 156836 20143283 ~ 20151686 (+)
col27a1b col27a1b,col27a1,LOC107699687,LOC107720196,LOC107552608,LOC107731038,LOC107720245,LOC107672548,LOC107587699 other upstream 273142 19967577 ~ 20035380 (+)
nrarpb nrarpb,nrarpa,nrarp,LOC108255347,LOC107595556 other upstream 598452 19707288 ~ 19710070 (+)
msh3 msh3,LOC107720281 other upstream 1294422 18962322 ~ 19014100 (+)
LOC122345834 lix1,LOC107587723,LOC107672536,LOC107699708,LOC107552634 other downstream 96318 20407768 ~ 20416507 (+)
G38094 olfm1a,LOC107672574,LOC107587661,LOC107552636 other downstream 247377 20558827 ~ 20562352 (+)
pappab pappab,LOC107665047,LOC107587665,LOC107667798,LOC107595518,LOC107731007,LOC107740823 other downstream 503971 20815421 ~ 20888271 (+)
cntrl cntrl,LOC107740813,LOC107665016,LOC107688625,LOC107731033,LOC107587713 other downstream 735490 21046940 ~ 21069517 (+)
tecta tecta,LOC107665015,LOC107688634,LOC106603728 other downstream 773498 21084948 ~ 21120840 (+)

Expression


Co-expression Network